Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g45520 | OGI:07074680 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:27154949-27155601 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAAAAAGCATGGTCGAATAAGCAAACCTGAAAAAATAGGGACAAATTGACAGTTGGACTTCAAAAGAGGGTCAAACAAGCAGTTGTCCCAATTTTTATTAACTCCTGCCCCCCACTCATTAAAACAAATTCGACCAAGTCACCTTCACTGAGATTAACGCAAAAGCAGTCTTTAATTCTCGAGTATCATGCCCATGGTATTTTGGCTTGAAGGAACAGCAATGGTCCAAACTGGATGACAGTGCGCCTACTTTGAAATTTAACTCTATCAAAGATCTCATCCTTACAGCAACCACCGACCTCTTTAACCCACGTGGCTCAGTGATGGTACCATCAAATAGCCGGATTTCCTTATCCAAGCCACTTGTTATACAACCGAGCAACAAATCGAAACTGGTTTGCACTTCTGATATGACAACCTCCACAGTTGCCTCAGCTGCCCAACGAAGACGTGATAAAGTTATGTCAACTGCACCGTAATCGCCAGGGATGCGAAATGTATATGAGTCATTCCATAGGCCTGCAGGGCCTATCAATGATGCACCATCGATCAGCTGTACGTCACATTTTTCTTGTTCGCCTATCTTGATCCTCATGTCATATTCAATTAGAGCATAGTCCATCATGTCTATCCCTCGCTTAGGGCCTGCCAT
More
|
||||||||||
| CDS seq | ATGGCAGGCCCTAAGCGAGGGATAGACATGATGGACTATGCTCTAATTGAATATGACATGAGGATCAAGATAGGCGAACAAGAAAAATGTGACGTACAGCTGATCGATGGTGCATCATTGATAGGCCCTGCAGGCCTATGGAATGACTCATATACATTTCGCATCCCTGGCGATTACGGTGCAGTTGACATAACTTTATCACGTCTTCGTTGGGCAGCTGAGGCAACTGTGGAGGTTGTCATATCAGAAGTGCAAACCAGTTTCGATTTGTTGCTCGGTTGTATAACAAGTGGCTTGGATAAGGAAATCCGGCTATTTGATGGTACCATCACTGAGCCACGTGGGTTAAAGAGGTCGGTGGTTGCTGTAAGGATGAGATCTTTGATAGAGTTAAATTTCAAAGTAGGCGCACTGTCATCCAGTTTGGACCATTGCTGTTCCTTCAAGCCAAAATACCATGGGCATGATACTCGAGAATTAAAGACTGCTTTTGCGTTAATCTCAGTGAAGGTTTGCTTATTCGACCATGCTTTTTAA
More
|
||||||||||
| Protein seq | MAGPKRGIDMMDYALIEYDMRIKIGEQEKCDVQLIDGASLIGPAGLWNDSYTFRIPGDYGAVDITLSRLRWAAEATVEVVISEVQTSFDLLLGCITSGLDKEIRLFDGTITEPRGLKRSVVAVRMRSLIELNFKVGALSSSLDHCCSFKPKYHGHDTRELKTAFALISVKVCLFDHAF |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g45520 | LOC_Os07g45520.1 | Chr07 | 27154949 | 27155601 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCAGGCCCTAAGCGAGGGATAGACATGATGGACTATGCTCTAATTGAATATGACATGAGGATCAAGATAGGCGAACAAGAAAAATGTGACGTACAGCTGATCGATGGTGCATCATTGATAGGCCCTGCAGGCCTATGGAATGACTCATATACATTTCGCATCCCTGGCGATTACGGTGCAGTTGACATAACTTTATCACGTCTTCGTTGGGCAGCTGAGGCAACTGTGGAGGTTGTCATATCAGAAGTGCAAACCAGTTTCGATTTGTTGCTCGGTTGTATAACAAGTGGCTTGGATAAGGAAATCCGGCTATTTGATGGTACCATCACTGAGCCACGTGGGTTAAAGAGGTCGGTGGTTGCTGTAAGGATGAGATCTTTGATAGAGTTAAATTTCAAAGTAGGCGCACTGTCATCCAGTTTGGACCATTGCTGTTCCTTCAAGCCAAAATACCATGGGCATGATACTCGAGAATTAAAGACTGCTTTTGCGTTAATCTCAGTGAAGGTTTGCTTATTCGACCATGCTTTTTAA
More
|
|||||||
| Protein seq | MAGPKRGIDMMDYALIEYDMRIKIGEQEKCDVQLIDGASLIGPAGLWNDSYTFRIPGDYGAVDITLSRLRWAAEATVEVVISEVQTSFDLLLGCITSGLDKEIRLFDGTITEPRGLKRSVVAVRMRSLIELNFKVGALSSSLDHCCSFKPKYHGHDTRELKTAFALISVKVCLFDHAF |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0649600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g45195 | SBH | 2.903098 | 3.401609 | 2.690468 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0649600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0025730 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0025780 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0025610 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0025310 | SBH | 1.124307 | 0.675823 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0025330 | SBH | 26.414890 | 9.363059 | 24.355761 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0447300 | RBH | 2.8681365 | 1.694624 | 7.9679675 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0026290 | RBH | 0.360202 | 0.089959 | 1.358870 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0459500 | RBH | 3.8043625 | 0.892949 | 19.743468 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0025140 | SBH | 1.286270 | 0.195170 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0025780 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0025150 | SBH | 22.263231 | 6.016223 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0025840 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0025220 | SBH | 0.882515 | 6.854999 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G025460 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0025070 | SBH | 6.176726 | 17.886311 | 9.603145 |
