Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0025140 | OGI:07074680 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:28002960-28007341 | ||||||||
| Gene Symbol | qHMS7 ORF3, qHMS7 ORF1, - | ||||||||||
| DNA seq | acaccacggctattccccctccctacccccgccgcctccccgtccgccgccgcgatgcgaattctccgccccattccgcgtcttccccgacgctctaacgccgccacctctcctgccccgatgcaccggctgatctcttctccctctttcatggcatctgcagcggctagctggtggtcaccattgcttgctcgtggaggacccgtccgtcgtgtttcccggtgtgttttcttgtgctgatgctaaagtctgcacctttacttggttattactacagttttggcatgattttcgtaggcagattccttgttctaatgctaaagtttgcgtcttttgccacagtttttggatctgcgatcaactttgggttttgttttcatttgttcgaaggtagatgcggaaaataagtttctttaaactaattcgaaacaaagacaaaggagatcgagaaaaaaaatttagaaatcgttatctcaggcttaggttaaaaaaaaatagaaatcgattatcgatttcagggttagataatgtcacttcacgatttcaatcctgactgatggtaccatcttatttattttagatgttgatattgggtctctcattctctttaatgatagatttccttgggaacctcggaacatcaccaccatcagtcgagtaaaaggcgacgagtcatacaggcggcttccatcccaggaaaagaatcatactgcgatcactcaaggtatgaaaaccattgacaccaggggcacaatcttggaggttagagctggagatgagaaaagtaataaagatgcggcgtcctcagaggttttatatgtcaaatatgatatactggggcaaagtgcgaagcatgatggctgtgatgcggaggaccgaaggagtgaaacagaggaacatgtggggggaatagttgtcagtgaggaggatgaagttcttgatcctgaagaatatactgtgaacaatatacttccaaaaagtagacaccgtgatggctctatatatatggacatcatggacacaccgtggaaaaaggagtttcatattgcagaccgtaatgagagtaagctatcttttctctatctttatttgctatagtattttttattagagataatttgtttccttgaacatagcgaatctttttccatatctataaataatttattgtgatcctagagatcattgtatatgtggtgctatgcagcactgccagaattttacccgccttacactcttttcagctatgagataattgtactggaggtccttaaacgtggaggagagtaacacttccaccccaagccttgtactttacttttactggcccttcagcttagcaccatttgcatacatagcaatctgcgccacagcctgatgggagggactgaggttgcatgtagagttctgatgacatggattaggaccttattccatgccatttaattacataaatgtccaaagtactttatccctgaactttgcaacacggtgatcacacagcctttgagcatgtatttcaatggcagaatacacaagaaaatgacaactataagtgcaaataataatctaaatatgacatctacactgttgtaattgccattaggtttaaattctccatacatgcagccacaaactgtcagtaatacaacttttccaagcatgcaaggagcaacaacaagcaataacagaaagtactcaggcagttcacatactatatacccctgtttaacatgaggagtgggttgccagtttccaaaatgtagaccacttcccaaaacatgtacttagctagcaaaattgtacttggttttctgtagaggtaaaaggctggtacaggaaagaatatacctggttttctatagaggtagtctgcccttgagtttttttttttcttgtagttgatactaggacagatgttgctctcctagtaaaaagaacataggttgtttctactttgtagatgaaaaggaaaaaaattccaataaggccatataatcgtcaaatatcacatgtacttttcaaatgtcaagtgtttgttcactgtattaatttccagttacaaacttacattatgactttactttttttgaagctcagttggaggcaatgaagttttcgaatcccacaaattgtgtcattcgcagaaatggaacttgcatgtcacattatcatcgctgcatgctgcaaattttatcattggagttggctaaaattacactggatggtggttcagtagagttgtatggatacatagctgtgcgggatgatctggatccgttgcttaattatatcgtcaattgtagcagggatgatccaatcattgtggagcaggtacacatccatatttatctagaaatattccatgtataagtctatctgaaaccctttaatattgaggtttgcccacttagctccctcaagtatagaatcaccttggggctgttttggtggtggtttcacccacatggcttgttatattgactctgccatttgggcaaaccagcaccgaagccacaccaagagaatcatttaggtggtagatctaaatgttatggaaaaaaaattggtttgggggggggggggggttatgaaccttggtacttgatggggtttagtggtcttatttcttattatttcgaattaaattactcatttcataatgtaaggcatactaaaactgctattctcttttacatcattaaggttggggtagattgtgaatgttttatcaacctcttgaattatttagtatatatacaaaaaaaaataagtttgctctcttgatttctgtaataactagaaataggattagtttgttgttgttgttccatgaatatatattgttttatacctcccatgtgatattttgctgcaaaaaaatgtttcgtgtgattaatctgtccaaaagtagcagattgtacaatactttggattgtataagccactactaccttcatccaaggtgtattttgatttggaaaattcatacttcatgagttttggcaaaaattcgtcaaattattggtactcgaattacttttaagatgttaattttattgcaattggcgatatattgatagagaaattaatggtcaaaatctacttttcaagaatttctcctgccaaaacgcaccttacatagggagtgtactctatattatgaaatgatgatttactatgagaacagatttaaattatgaaactaaggaacacatgtattccaaagaaaaaaatcatgttaaatagttttggacactttgttgctgcttagtaccctacataaattgtatttttgttgtttcatacatgatgaagatcttggtagttgtaaaatattccttttaagtaaatgctgttacaagtgaaacaacataagcaagcatccacttttagatatttcttacttttatacgaagagcaactaaataaaataattttgtagggttcgctcatcaacatagaaggccctaagcgaggaatagacatgagggattatgctctaattgaatatgacatgaggatcaagacaggcaaacaagaaaaagatgacctacagctgattgatggtgcatcaatgataggccctgcaggcctatggaatcggccagaaacaatttgcattcctggcgattacggtgcagttgacataactttatcacgtttttattgttcagctgaggccaccgtacagattcttatatcagaagtgcaaagcagtttcaatttgttgctcggttgtttaaccagtaacttggataaggaaatccgtctctttgatggtgtcatcagtgagtcacgtggtttaaagaggtcggtggttgctgtaaggagggattctttcatagatttgaagttcgaagtgggcgcgtttccatccagtttcgaccagcattatgtttccttcaaggagaaaatccatggctatgatactcaagaaataaagactgattttgcgttaatctcagtaaaggtgacttggtcagctttgctttctggactagagtgatacctctgtttctgtaacagagtgggccaagagtggctaaaaacctgcggcttactaaacctaggtgcggcaaacttggatagtaaagtattgtaataaatctgtcattgtaattaagccctccgtccctgaaaaaaagtacttttagtaatgcatctgaataagtgtttgttgagatgcatagtcggtcaatctctccgtccctgaaaaactgaacaagaacttttagacatgcataattagtttcgtctctgtattattacttcagcactaggggttatattaattatatggaggaatcttcaaggcacaaccgtagagtggcttctctgtgatttctgcatttctgaatcgtatgttttgtggttatagt
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| CDS seq | atgcgaattctccgccccattccgcgtcttccccgacgctctaacgccgccacctctcctgccccgatgcaccggctgatctcttctccctctttcatggcatctgcagcggctagctggtggtcaccattgcttgctcgtggaggacccgtccgtcgtgtttcccgatttccttgggaacctcggaacatcaccaccatcagtcgagtaaaaggcgacgagtcatacaggcggcttccatcccaggaaaagaatcatactgcgatcactcaaggtatgaaaaccattgacaccaggggcacaatcttggaggttagagctggagatgagaaaagtaataaagatgcggcgtcctcagaggttttatatgtcaaatatgatatactggggcaaagtgcgaagcatgatggctgtgatgcggaggaccgaaggagtgaaacagaggaacatgtggggggaatagttgtcagtgaggaggatgaagttcttgatcctgaagaatatactgtgaacaatatacttccaaaaagtagacaccgtgatggctctatatatatggacatcatggacacaccgtggaaaaaggagtttcatattgcagaccgtaatgagactcagttggaggcaatgaagttttcgaatcccacaaattgtgtcattcgcagaaatggaacttgcatgtcacattatcatcgctgcatgctgcaaattttatcattggagttggctaaaattacactggatggtggttcagtagagttgtatggatacatagctgtgcgggatgatctggatccgttgcttaattatatcgtcaattgtagcagggatgatccaatcattgtggagcagggttcgctcatcaacatagaaggccctaagcgaggaatagacatgagggattatgctctaattgaatatgacatgaggatcaagacaggcaaacaagaaaaagatgacctacagctgattgatggtgcatcaatgataggccctgcaggcctatggaatcggccagaaacaatttgcattcctggcgattacggtgcagttgacataactttatcacgtttttattgttcagctgaggccaccgtacagattcttatatcagaagtgcaaagcagtttcaatttgttgctcggttgtttaaccagtaacttggataaggaaatccgtctctttgatggtgtcatcagtgagtcacgtggtttaaagaggtcggtggttgctgtaaggagggattctttcatagatttgaagttcgaagtgggcgcgtttccatccagtttcgaccagcattatgtttccttcaaggagaaaatccatggctatgatactcaagaaataaagactgattttgcgttaatctcagtaaaggtgacttggtcagctttgctttctggactagagtga
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| Protein seq | MRILRPIPRLPRRSNAATSPAPMHRLISSPSFMASAAASWWSPLLARGGPVRRVSRFPWEPRNITTISRVKGDESYRRLPSQEKNHTAITQGMKTIDTRGTILEVRAGDEKSNKDAASSEVLYVKYDILGQSAKHDGCDAEDRRSETEEHVGGIVVSEEDEVLDPEEYTVNNILPKSRHRDGSIYMDIMDTPWKKEFHIADRNETQLEAMKFSNPTNCVIRRNGTCMSHYHRCMLQILSLELAKITLDGGSVELYGYIAVRDDLDPLLNYIVNCSRDDPIIVEQGSLINIEGPKRGIDMRDYALIEYDMRIKTGKQEKDDLQLIDGASMIGPAGLWNRPETICIPGDYGAVDITLSRFYCSAEATVQILISEVQSSFNLLLGCLTSNLDKEIRLFDGVISESRGLKRSVVAVRRDSFIDLKFEVGAFPSSFDQHYVSFKEKIHGYDTQEIKTDFALISVKVTWSALLSGLE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0025140 | OsLima_07g0025140.01 | Chr07 | 28002960 | 28007341 | + | NAM | ||
| CDS seq | atggctctatatatatggacatcatggacacaccgtggaaaaaggagtttcatattgcagaccgtaatgagattggaggcaatgaagttttcgaatcccacaaattgtgtcattcgcagaaatggaacttgcatgtcacattatcatcgctgcatgctgcaaattttatcattggagttggctaaaattacactggatggtggttcagtagagttgtatggatacatagctgtgcgggatgatctggatccgttgcttaattatatcgtcaattgtagcagggatgatccaatcattgtggagcagggttcgctcatcaacatagaaggccctaagcgaggaatagacatgagggattatgctctaattgaatatgacatgaggatcaagacaggcaaacaagaaaaagatgacctacagctgattgatggtgcatcaatgataggccctgcaggcctatggaatcggccagaaacaatttgcattcctggcgattacggtgcagttgacataactttatcacgtttttattgttcagctgaggccaccgtacagattcttatatcagaagtgcaaagcagtttcaatttgttgctcggttgtttaaccagtaacttggataaggaaatccgtctctttgatggtgtcatcagtgagtcacgtggtttaaagaggtcggtggttgctgtaaggagggattctttcatagatttgaagttcgaagtgggcgcgtttccatccagtttcgaccagcattatgtttccttcaaggagaaaatccatggctatgatactcaagaaataaagactgattttgcgttaatctcagtaaaggtgacttggtcagctttgctttctggactagagtga
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| Protein seq | MALYIWTSWTHRGKRSFILQTVMRLEAMKFSNPTNCVIRRNGTCMSHYHRCMLQILSLELAKITLDGGSVELYGYIAVRDDLDPLLNYIVNCSRDDPIIVEQGSLINIEGPKRGIDMRDYALIEYDMRIKTGKQEKDDLQLIDGASMIGPAGLWNRPETICIPGDYGAVDITLSRFYCSAEATVQILISEVQSSFNLLLGCLTSNLDKEIRLFDGVISESRGLKRSVVAVRRDSFIDLKFEVGAFPSSFDQHYVSFKEKIHGYDTQEIKTDFALISVKVTWSALLSGLE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0025140 | OsLima_07g0025140.02 | Chr07 | 28002960 | 28007341 | + | NAM | ||
| CDS seq | atgcgaattctccgccccattccgcgtcttccccgacgctctaacgccgccacctctcctgccccgatgcaccggctgatctcttctccctctttcatggcatctgcagcggctagctggtggtcaccattgcttgctcgtggaggacccgtccgtcgtgtttcccgatttccttgggaacctcggaacatcaccaccatcagtcgagtaaaaggcgacgagtcatacaggcggcttccatcccaggaaaagaatcatactgcgatcactcaaggtatgaaaaccattgacaccaggggcacaatcttggaggttagagctggagatgagaaaagtaataaagatgcggcgtcctcagaggttttatatgtcaaatatgatatactggggcaaagtgcgaagcatgatggctgtgatgcggaggaccgaaggagtgaaacagaggaacatgtggggggaatagttgtcagtgaggaggatgaagttcttgatcctgaagaatatactgtgaacaatatacttccaaaaagtagacaccgtgatggctctatatatatggacatcatggacacaccgtggaaaaaggagtttcatattgcagaccgtaatgagactcagttggaggcaatgaagttttcgaatcccacaaattgtgtcattcgcagaaatggaacttgcatgtcacattatcatcgctgcatgctgcaaattttatcattggagttggctaaaattacactggatggtggttcagtagagttgtatggatacatagctgtgcgggatgatctggatccgttgcttaattatatcgtcaattgtagcagggatgatccaatcattgtggagcagggttcgctcatcaacatagaaggccctaagcgaggaatagacatgagggattatgctctaattgaatatgacatgaggatcaagacaggcaaacaagaaaaagatgacctacagctgattgatggtgcatcaatgataggccctgcaggcctatggaatcggccagaaacaatttgcattcctggcgattacggtgcagttgacataactttatcacgtttttattgttcagctgaggccaccgtacagattcttatatcagaagtgcaaagcagtttcaatttgttgctcggttgtttaaccagtaacttggataaggaaatccgtctctttgatggtgtcatcagtgagtcacgtggtttaaagaggtcggtggttgctgtaaggagggattctttcatagatttgaagttcgaagtgggcgcgtttccatccagtttcgaccagcattatgtttccttcaaggagaaaatccatggctatgatactcaagaaataaagactgattttgcgttaatctcagtaaaggtgacttggtcagctttgctttctggactagagtga
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| Protein seq | MRILRPIPRLPRRSNAATSPAPMHRLISSPSFMASAAASWWSPLLARGGPVRRVSRFPWEPRNITTISRVKGDESYRRLPSQEKNHTAITQGMKTIDTRGTILEVRAGDEKSNKDAASSEVLYVKYDILGQSAKHDGCDAEDRRSETEEHVGGIVVSEEDEVLDPEEYTVNNILPKSRHRDGSIYMDIMDTPWKKEFHIADRNETQLEAMKFSNPTNCVIRRNGTCMSHYHRCMLQILSLELAKITLDGGSVELYGYIAVRDDLDPLLNYIVNCSRDDPIIVEQGSLINIEGPKRGIDMRDYALIEYDMRIKTGKQEKDDLQLIDGASMIGPAGLWNRPETICIPGDYGAVDITLSRFYCSAEATVQILISEVQSSFNLLLGCLTSNLDKEIRLFDGVISESRGLKRSVVAVRRDSFIDLKFEVGAFPSSFDQHYVSFKEKIHGYDTQEIKTDFALISVKVTWSALLSGLE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr07 | 28004022 | 28005060 | + | OsLima_07g0025140.02 | OsLima_07g0025140.01,OsLima_07g0025140.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.286270 | 0.195170 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0646600 | SBH | 5.391610 | 7.144322 | 8.804140 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g45194 | SBH | 2.855486 | 3.775033 | 1.780208 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0646600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0025390 | SBH | 4.494284 | 19.975655 | 17.351009 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0025310 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0025290 | SBH | 5.052930 | 5.726491 | 22.455086 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0025310 | SBH | 1.124307 | 0.675823 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0025330 | RBH | 26.414890 | 9.363059 | 24.355761 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0442700 | RBH | 4.5853915 | 3.4709785 | 3.309221 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0025820 | RBH | 1.081846 | 0.600679 | 1.727962 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0454400 | RBH | 0 | 7.5595935 | 5.5632465 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0025290 | SBH | 1.043172 | 0.276753 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0025510 | SBH | 0.000000 | 5.455245 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0025340 | SBH | 21.470709 | 53.500263 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0025350 | RBH | 2.708338 | 0.958452 | 1.230944 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0025220 | SBH | 0.882515 | 6.854999 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G025210 | SBH | 1.325499 | 6.854395 | 5.749860 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0025070 | RBH | 6.176726 | 17.886311 | 9.603145 |
