Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g38780 | OGI:01039680 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:23270244-23271535 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTATTCCTCAGCAAGTTCTCTAGCTAATTGGTCCAACACATTTTCATGTCTCTTCAGTTTTGCTTCACTAAAGGTTGATGTATCCTTCTCCATCAGTTTTAAATACATTTGGTATTTTTCTGCCCTTGCCTTCTCTTTTTTTGCAATCGCCTTCTCTTTTTTTGCTTCTGCTCCAATCAGTGTTGCTTCTGCTGCCTTTAGCAATGCTGCTGCTTTAGTTGTAATAGCTTCGTGAAAGAGAACCATATTTTGACTTGGCTTATCCCCTAAAGGTGATGGTGCACCTTTTCCTTTTTGCCTCTGTTTTGCTGCCTTCTGCCCCTCAGGGCGCTTCTCTTTGCGCTCTGTTTCCTCCTCTGTGTCTTGGTTCGACGATGAAGTATATGCTCCTGATTCAGAAATCTTGTTCCTCTTATTATGGCTACTCTCTTCAAGGACTCTACGCCATTTAGGTTGATCTTTAAGATCTTTCCACATATACTCCAAGGTGAAAGGTTTTTGGTTGTTGTGCTTTTTGTACCATTCACAGGCTTTCTCCATTATCATATCATCAGAATACCCACTTGTGAAAGTAGTTCTAGCTTTAGAATAAAATCCACAGAACTTAGTGACATCTCTCTTGACATTGTCCCAATGTGTTCTGCATTGCTTGGGGTTCCTTTTGTTCCCATTACTAGGCATATTGCTGTTGAACTCTCTAGCTACAGCCTTCCAATATTGTTCTGATTTCTTGTCATTGCCTTTGATGGGATCAACTGAATTGTTCAACCAAGAACTCATTAGTCGTATATTGTCATCTTCAGTCCAATTGATGCGTGTCCCTCTTCTTCCTTCTTCACTGCTATCACTTGCCTCTTCAACCTCAACTACTTCTTTCTCATTATGTCTTGTATGACATGGAGAAGCTGATCCATGAAAGAAGTGTTGGCTGTAGCCCCAATTGAAGTACTATATTGCATACCAAACTGTGATCTATTGGCTGCAAATCCAAATGCTTGGTTAAATGAGTGCACCAGATTTTCTTGAAGTTGAAAACCTTCCAAGCTTCCTGGAGTAGGTTGCCCATAATATTCTTGTTGCTGAGCACCTTGAAAGATTGGAGGGTGTCGATATGGTTGGTAGTTGCTTGGAGGACCAAAAGGATGGAAATTTTGGAGAAAACTAGGTCTGAAGTTTTGGGGATAACTTGTGGGAAATTGGGTAGAAAGGGAGTTTTGGGCCTCACTATTTGTTGCTTGGCTTGAGGAACCTTGGTTGAGGAGGTTTGAGAAGTTTCCTTTGAAAGGCTCCAT
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| CDS seq | ATGGAGCCTTTCAAAGGAAACTTCTCAAACCTCCTCAACCAAGGTTCCTCAAGCCAAGCAACAAATAGTGAGGCCCAAAACTCCCTTTCTACCCAATTTCCCACAAGTTATCCCCAAAACTTCAGACCTAGTTTTCTCCAAAATTTCCATCCTTTTGGTCCTCCAAGCAACTACCAACCATATCGACACCCTCCAATCTTTCAAGGTGCTCAGCAACAAGAATATTATGGGCAACCTACTCCAGGAAGCTTGGAAGGTTTTCAACTTCAAGAAAATCTGGTGCACTCATTTAACCAAGCATTTGGATTTGCAGCCAATAGATCACAGTTTGTTGATCCCATCAAAGGCAATGACAAGAAATCAGAACAATATTGGAAGGCTGTAGCTAGAGAGTTCAACAGCAATATGCCTAGTAATGGGAACAAAAGGAACCCCAAGCAATGCAGAACACATTGGGACAATGTCAAGAGAGATGTCACTAAGTTCTGTGGATTTTATTCTAAAGCTAGAACTACTTTCACAAGTGGGTATTCTGATGATATGATAATGGAGAAAGCCTGTGAATGGTACAAAAAGCACAACAACCAAAAACCTTTCACCTTGGAGTATATGTGGAAAGATCTTAAAGATCAACCTAAATGGCGTAGAGTCCTTGAAGAGAGTAGCCATAATAAGAGGAACAAGATTTCTGAATCAGGAGCATATACTTCATCGTCGAACCAAGACACAGAGGAGGAAACAGAGCGCAAAGAGAAGCGCCCTGAGGGGCAGAAGGCAGCAAAACAGAGGCAAAAAGGAAAAGGTGCACCATCACCTTTAGGGGATAAGCCAAGTCAAAATATGGTTCTCTTTCACGAAGCTATTACAACTAAAGCAGCAGCATTGCTAAAGGCAGCAGAAGCAACACTGATTGGAGCAGAAGCAAAAAAAGAGAAGGCGATTGCAAAAAAAGAGAAGGCAAGGGCAGAAAAATACCAAATGTATTTAAAACTGATGGAGAAGGATACATCAACCTTTAGTGAAGCAAAACTGAAGAGACATGAAAATGTGTTGGACCAATTAGCTAGAGAACTTGCTGAGGAATAA
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| Protein seq | MEPFKGNFSNLLNQGSSSQATNSEAQNSLSTQFPTSYPQNFRPSFLQNFHPFGPPSNYQPYRHPPIFQGAQQQEYYGQPTPGSLEGFQLQENLVHSFNQAFGFAANRSQFVDPIKGNDKKSEQYWKAVAREFNSNMPSNGNKRNPKQCRTHWDNVKRDVTKFCGFYSKARTTFTSGYSDDMIMEKACEWYKKHNNQKPFTLEYMWKDLKDQPKWRRVLEESSHNKRNKISESGAYTSSSNQDTEEETERKEKRPEGQKAAKQRQKGKGAPSPLGDKPSQNMVLFHEAITTKAAALLKAAEATLIGAEAKKEKAIAKKEKARAEKYQMYLKLMEKDTSTFSEAKLKRHENVLDQLARELAEE |
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| Function | Glutathione S-transferase T3 [UniProtKB/Swiss-Prot:Q9FHE1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g38780 | LOC_Os07g38780.1 | Chr07 | 23270244 | 23271535 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAGCCTTTCAAAGGAAACTTCTCAAACCTCCTCAACCAAGGTTCCTCAAGCCAAGCAACAAATAGTGAGGCCCAAAACTCCCTTTCTACCCAATTTCCCACAAGTTATCCCCAAAACTTCAGACCTAGTTTTCTCCAAAATTTCCATCCTTTTGGTCCTCCAAGCAACTACCAACCATATCGACACCCTCCAATCTTTCAAGGTGCTCAGCAACAAGAATATTATGGGCAACCTACTCCAGGAAGCTTGGAAGGTTTTCAACTTCAAGAAAATCTGGTGCACTCATTTAACCAAGCATTTGGATTTGCAGCCAATAGATCACAGTTTGTTGATCCCATCAAAGGCAATGACAAGAAATCAGAACAATATTGGAAGGCTGTAGCTAGAGAGTTCAACAGCAATATGCCTAGTAATGGGAACAAAAGGAACCCCAAGCAATGCAGAACACATTGGGACAATGTCAAGAGAGATGTCACTAAGTTCTGTGGATTTTATTCTAAAGCTAGAACTACTTTCACAAGTGGGTATTCTGATGATATGATAATGGAGAAAGCCTGTGAATGGTACAAAAAGCACAACAACCAAAAACCTTTCACCTTGGAGTATATGTGGAAAGATCTTAAAGATCAACCTAAATGGCGTAGAGTCCTTGAAGAGAGTAGCCATAATAAGAGGAACAAGATTTCTGAATCAGGAGCATATACTTCATCGTCGAACCAAGACACAGAGGAGGAAACAGAGCGCAAAGAGAAGCGCCCTGAGGGGCAGAAGGCAGCAAAACAGAGGCAAAAAGGAAAAGGTGCACCATCACCTTTAGGGGATAAGCCAAGTCAAAATATGGTTCTCTTTCACGAAGCTATTACAACTAAAGCAGCAGCATTGCTAAAGGCAGCAGAAGCAACACTGATTGGAGCAGAAGCAAAAAAAGAGAAGGCGATTGCAAAAAAAGAGAAGGCAAGGGCAGAAAAATACCAAATGTATTTAAAACTGATGGAGAAGGATACATCAACCTTTAGTGAAGCAAAACTGAAGAGACATGAAAATGTGTTGGACCAATTAGCTAGAGAACTTGCTGAGGAATAA
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| Protein seq | MEPFKGNFSNLLNQGSSSQATNSEAQNSLSTQFPTSYPQNFRPSFLQNFHPFGPPSNYQPYRHPPIFQGAQQQEYYGQPTPGSLEGFQLQENLVHSFNQAFGFAANRSQFVDPIKGNDKKSEQYWKAVAREFNSNMPSNGNKRNPKQCRTHWDNVKRDVTKFCGFYSKARTTFTSGYSDDMIMEKACEWYKKHNNQKPFTLEYMWKDLKDQPKWRRVLEESSHNKRNKISESGAYTSSSNQDTEEETERKEKRPEGQKAAKQRQKGKGAPSPLGDKPSQNMVLFHEAITTKAAALLKAAEATLIGAEAKKEKAIAKKEKARAEKYQMYLKLMEKDTSTFSEAKLKRHENVLDQLARELAEE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g34380 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0020530 | RBH | 0.0 | 0.0 | 0.390269 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0020460 | RBH | 1.153239 | 0.0 | 2.985879 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0020360 | RBH | 0.252479 | 0.294502 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0010400 | SBH | 0.0 | 0.0 | 1.305991 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0435300 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0017110 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0245900 | SBH | 0.023967 | 0 | 0.012275 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0014450 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0010720 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0020270 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0016930 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0016800 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G025790 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0023930 | SBH | 8.431509 | 30.768583 | 7.627371 |
