Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g34380 | OGI:06055650 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:20008346-20009575 | ||||||||
| Gene Symbol | MSL26, OsMSL26 | ||||||||||
| DNA seq | TCACTGGAGGTTGATGTATCCTTCTCCATCAGTTTTAAATACATTTGGTATTTTTCTGCCCTTGCCTTCTCTTTTTTTTGCAATCGCCTTCTCTTTTTTTGCTTCTGCTCCAATCAGTGTTGCTTCTGCTGCCTTTAGCAATGCTGCTGCTTTAGTTGTAATAGCTTCGTGAAAGAGAACCATATTTTGACTTGGCTTATCCCCTAAAGGTGATGGTGCACCTTTTCCTTTTTGCCTCTGTTTTGCTGCCTTCTGCCCCTCAGGGCGCTTCTCTTTGCGCTCTGTTTCCTCCTCTGTGTCTTGGTTCGACGATGAAGTATATGCTCCTGATTCAGAAATCTTGCTCCTCTTATTATGGCTACTCTCTTCAAGGACTCTACGCCATTTAGGTTGATCTTTAAGATCTTTCCACATATACTCCAAGGTGAAAGGTTTTTGGTTGTTGTGCTTTTTGTACCATTCACGGGCTTTCTCCATTATCATATCATCAGAATACCCACTTGTGAAAGTAGTTCTAGCTTTAGAATAAAATCCACAGAACTTAGTGACATCTCTCTTGACATTGTCCCAATGTGTTCTGCATTGCTTGGGGTTCCTTTTGTTCCCATTGCTAGGCATATTGCTGTTGAACTCTCTAGCTACAGCCTTCCAATATTGTTCTGATTTCTTGTCATTGCCTTTGATGGGATCAACTGAATTGTTCAACCAAGAACTCATTAGTCGTATATTGTCATCTTCAGTCCAATTGATGCGTGTCCCTCTTCTTCCTTCTTCACTGCTATCACTTGCCTCTTCAACCTCAACTACTTCTTTCTCATTATGTCTTGTATGACATGGAGAAGCTGATCCATGAGAAGAAGTGTTGGCTGTAGCCCTAATTGAAGTACTATATTGCATACCAAACTGTGATCTATTGGCTGCAAATCCAAATGCTTGGTTAGATGAGTGCACCAGATTTTCTTGAAGTTGAAAACCTTCCAAGCTTCCTGGAGTAGGTTGCCCATAATATTCTTGTTGCTGAGCACCTTGAAAGATTGGAGGGTGTCGATATGGCTGGTAGTTGCTTGGAGGACCAAAAGGATGGAAATTTTGGAGAAAACTAGGTCTGAAGTTTTGGGGATAACTTGTGGGAAATTGGGTAGAAAGGGAGTTTTGGGCCTCACTATTTGTTGCTTGGCTTGAGGAACCTTGGTTGAGGAGGTTTGAGAAGTTTCCTTTGAAAGGCTCCAT
More
|
||||||||||
| CDS seq | ATGGAGCCTTTCAAAGGAAACTTCTCAAACCTCCTCAACCAAGGTTCCTCAAGCCAAGCAACAAATAGTGAGGCCCAAAACTCCCTTTCTACCCAATTTCCCACAAGTTATCCCCAAAACTTCAGACCTAGTTTTCTCCAAAATTTCCATCCTTTTGGTCCTCCAAGCAACTACCAGCCATATCGACACCCTCCAATCTTTCAAGGTGCTCAGCAACAAGAATATTATGGGCAACCTACTCCAGGAAGCTTGGAAGGTTTTCAACTTCAAGAAAATCTGGTGCACTCATCTAACCAAGCATTTGGATTTGCAGCCAATAGATCACAGTTTGGTATGCAATATAGTACTTCAATTAGGGCTACAGCCAACACTTCTTCTCATGGATCAGCTTCTCCATGTCATACAAGACATAATGAGAAAGAAGTAGTTGAGGTTGAAGAGGCAAGTGATAGCAGTGAAGAAGGAAGAAGAGGGACACGCATCAATTGGACTGAAGATGACAATATACGACTAATGAGTTCTTGGTTGAACAATTCAGTTGATCCCATCAAAGGCAATGACAAGAAATCAGAACAATATTGGAAGGCTGTAGCTAGAGAGTTCAACAGCAATATGCCTAGCAATGGGAACAAAAGGAACCCCAAGCAATGCAGAACACATTGGGACAATGTCAAGAGAGATGTCACTAAGTTCTGTGGATTTTATTCTAAAGCTAGAACTACTTTCACAAGTGGGTATTCTGATGATATGATAATGGAGAAAGCCCGTGAATGGTACAAAAAGCACAACAACCAAAAACCTTTCACCTTGGAGTATATGTGGAAAGATCTTAAAGATCAACCTAAATGGCGTAGAGTCCTTGAAGAGAGTAGCCATAATAAGAGGAGCAAGATTTCTGAATCAGGAGCATATACTTCATCGTCGAACCAAGACACAGAGGAGGAAACAGAGCGCAAAGAGAAGCGCCCTGAGGGGCAGAAGGCAGCAAAACAGAGGCAAAAAGGAAAAGGTGCACCATCACCTTTAGGGGATAAGCCAAGTCAAAATATGGTTCTCTTTCACGAAGCTATTACAACTAAAGCAGCAGCATTGCTAAAGGCAGCAGAAGCAACACTGATTGGAGCAGAAGCAAAAAAAGAGAAGGCGATTGCAAAAAAAAGAGAAGGCAAGGGCAGAAAAATACCAAATGTATTTAAAACTGATGGAGAAGGATACATCAACCTCCAGTGA
More
|
||||||||||
| Protein seq | MEPFKGNFSNLLNQGSSSQATNSEAQNSLSTQFPTSYPQNFRPSFLQNFHPFGPPSNYQPYRHPPIFQGAQQQEYYGQPTPGSLEGFQLQENLVHSSNQAFGFAANRSQFGMQYSTSIRATANTSSHGSASPCHTRHNEKEVVEVEEASDSSEEGRRGTRINWTEDDNIRLMSSWLNNSVDPIKGNDKKSEQYWKAVAREFNSNMPSNGNKRNPKQCRTHWDNVKRDVTKFCGFYSKARTTFTSGYSDDMIMEKAREWYKKHNNQKPFTLEYMWKDLKDQPKWRRVLEESSHNKRSKISESGAYTSSSNQDTEEETERKEKRPEGQKAAKQRQKGKGAPSPLGDKPSQNMVLFHEAITTKAAALLKAAEATLIGAEAKKEKAIAKKREGKGRKIPNVFKTDGEGYINLQ |
||||||||||
| Function | Glutathione S-transferase T3 [UniProtKB/Swiss-Prot:Q9FHE1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g34380 | LOC_Os06g34380.1 | Chr06 | 20008346 | 20009575 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAGCCTTTCAAAGGAAACTTCTCAAACCTCCTCAACCAAGGTTCCTCAAGCCAAGCAACAAATAGTGAGGCCCAAAACTCCCTTTCTACCCAATTTCCCACAAGTTATCCCCAAAACTTCAGACCTAGTTTTCTCCAAAATTTCCATCCTTTTGGTCCTCCAAGCAACTACCAGCCATATCGACACCCTCCAATCTTTCAAGGTGCTCAGCAACAAGAATATTATGGGCAACCTACTCCAGGAAGCTTGGAAGGTTTTCAACTTCAAGAAAATCTGGTGCACTCATCTAACCAAGCATTTGGATTTGCAGCCAATAGATCACAGTTTGGTATGCAATATAGTACTTCAATTAGGGCTACAGCCAACACTTCTTCTCATGGATCAGCTTCTCCATGTCATACAAGACATAATGAGAAAGAAGTAGTTGAGGTTGAAGAGGCAAGTGATAGCAGTGAAGAAGGAAGAAGAGGGACACGCATCAATTGGACTGAAGATGACAATATACGACTAATGAGTTCTTGGTTGAACAATTCAGTTGATCCCATCAAAGGCAATGACAAGAAATCAGAACAATATTGGAAGGCTGTAGCTAGAGAGTTCAACAGCAATATGCCTAGCAATGGGAACAAAAGGAACCCCAAGCAATGCAGAACACATTGGGACAATGTCAAGAGAGATGTCACTAAGTTCTGTGGATTTTATTCTAAAGCTAGAACTACTTTCACAAGTGGGTATTCTGATGATATGATAATGGAGAAAGCCCGTGAATGGTACAAAAAGCACAACAACCAAAAACCTTTCACCTTGGAGTATATGTGGAAAGATCTTAAAGATCAACCTAAATGGCGTAGAGTCCTTGAAGAGAGTAGCCATAATAAGAGGAGCAAGATTTCTGAATCAGGAGCATATACTTCATCGTCGAACCAAGACACAGAGGAGGAAACAGAGCGCAAAGAGAAGCGCCCTGAGGGGCAGAAGGCAGCAAAACAGAGGCAAAAAGGAAAAGGTGCACCATCACCTTTAGGGGATAAGCCAAGTCAAAATATGGTTCTCTTTCACGAAGCTATTACAACTAAAGCAGCAGCATTGCTAAAGGCAGCAGAAGCAACACTGATTGGAGCAGAAGCAAAAAAAGAGAAGGCGATTGCAAAAAAAAGAGAAGGCAAGGGCAGAAAAATACCAAATGTATTTAAAACTGATGGAGAAGGATACATCAACCTCCAGTGA
More
|
|||||||
| Protein seq | MEPFKGNFSNLLNQGSSSQATNSEAQNSLSTQFPTSYPQNFRPSFLQNFHPFGPPSNYQPYRHPPIFQGAQQQEYYGQPTPGSLEGFQLQENLVHSSNQAFGFAANRSQFGMQYSTSIRATANTSSHGSASPCHTRHNEKEVVEVEEASDSSEEGRRGTRINWTEDDNIRLMSSWLNNSVDPIKGNDKKSEQYWKAVAREFNSNMPSNGNKRNPKQCRTHWDNVKRDVTKFCGFYSKARTTFTSGYSDDMIMEKAREWYKKHNNQKPFTLEYMWKDLKDQPKWRRVLEESSHNKRSKISESGAYTSSSNQDTEEETERKEKRPEGQKAAKQRQKGKGAPSPLGDKPSQNMVLFHEAITTKAAALLKAAEATLIGAEAKKEKAIAKKREGKGRKIPNVFKTDGEGYINLQ
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0521000 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g31510 | RBH | 0.0 | 0.0 | 0.026879 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0521000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0018410 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0018240 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0025110 | SBH | 0.000000 | 0.000000 | 0.437605 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0024700 | SBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0010400 | SBH | 0.0 | 0.0 | 1.305991 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0122200 | SBH | 0 | 0.0078415 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0587000 | SBH | 3.706924 | 3.5073945 | 18.353083 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0025080 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0010640 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0018490 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0009950 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G010550 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0010480 | SBH | 0.000000 | 0.000000 | 0.000000 |
