Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g11920 | OGI:05040150 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:6613131-6613762 | ||||||||
| Gene Symbol | Prol-22, pro13b.3, PROLM22 | ||||||||||
| DNA seq | TATTTAAATATGAAAGATAATTTTATTTCTATTTATATCACCTTAAGTTTCACATGTCACATACGATGATACCTGAGCTTATATTTTCACTTCCGAACTACAATATTGTGAAAATTCAGTACAAGACACCGCCAAGGGTGGTAATACTACCCGGTGCACTATAGTACCTAGGGTAGATACCATATGTAGATGGCAAGTTAAAAGCCAACAGTGCTTGCGCTTGAGCCAGATTCCGGTCAATGTAGAGATCGCCAAACTGCTGGAGGTGTAGCTGCTGCGCTATGGCCTGGACAACGTTAATGTCCTGGTAGTGAGATTGTTGCGCCACCAGCCTGAGCTGTTGCAAGACTTGGTTGTTTCTCAGTTGAAACACAGCTGATTGCAAGAAGGGGCTTGCCGCAATGCTATACTGCTGCCTTACGAACTCATTATATAGGCTAAGCACCTGTTGCTGTAGCAGGAGAGGCGACTGCACCTGATATTGCCTAATATTTTGACCTAAAACATCAAACTGCGCTGTGGCGCTGCATGCAGCAATAGCAAGGAGAGCAAAGACGAAAATGATCTTCATTGTTGCAGGACACTAGTTCTTTTAAATTTTTGTTGTATAATGCTTGAATTGTGCGAGCGAT
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| CDS seq | ATGAAGATCATTTTCGTCTTTGCTCTCCTTGCTATTGCTGCATGCAGCGCCACAGCGCAGTTTGATGTTTTAGGTCAAAATATTAGGCAATATCAGGTGCAGTCGCCTCTCCTGCTACAGCAACAGGTGCTTAGCCTATATAATGAGTTCGTAAGGCAGCAGTATAGCATTGCGGCAAGCCCCTTCTTGCAATCAGCTGTGTTTCAACTGAGAAACAACCAAGTCTTGCAACAGCTCAGGCTGGTGGCGCAACAATCTCACTACCAGGACATTAACGTTGTCCAGGCCATAGCGCAGCAGCTACACCTCCAGCAGTTTGGCGATCTCTACATTGACCGGAATCTGGCTCAAGCGCAAGCACTGTTGGCTTTTAACTTGCCATCTACATATGGTATCTACCCTAGGTACTATAGTGCACCGGGTAGTATTACCACCCTTGGCGGTGTCTTGTACTGA
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| Protein seq | MKIIFVFALLAIAACSATAQFDVLGQNIRQYQVQSPLLLQQQVLSLYNEFVRQQYSIAASPFLQSAVFQLRNNQVLQQLRLVAQQSHYQDINVVQAIAQQLHLQQFGDLYIDRNLAQAQALLAFNLPSTYGIYPRYYSAPGSITTLGGVLY |
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| Function | Prolamin PPROL 14P [UniProtKB/Swiss-Prot:Q42465] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g11920 | LOC_Os07g11920.1 | Chr07 | 6613131 | 6613762 | - | MSU_osa1r7 | ||
| CDS seq | ATGAAGATCATTTTCGTCTTTGCTCTCCTTGCTATTGCTGCATGCAGCGCCACAGCGCAGTTTGATGTTTTAGGTCAAAATATTAGGCAATATCAGGTGCAGTCGCCTCTCCTGCTACAGCAACAGGTGCTTAGCCTATATAATGAGTTCGTAAGGCAGCAGTATAGCATTGCGGCAAGCCCCTTCTTGCAATCAGCTGTGTTTCAACTGAGAAACAACCAAGTCTTGCAACAGCTCAGGCTGGTGGCGCAACAATCTCACTACCAGGACATTAACGTTGTCCAGGCCATAGCGCAGCAGCTACACCTCCAGCAGTTTGGCGATCTCTACATTGACCGGAATCTGGCTCAAGCGCAAGCACTGTTGGCTTTTAACTTGCCATCTACATATGGTATCTACCCTAGGTACTATAGTGCACCGGGTAGTATTACCACCCTTGGCGGTGTCTTGTACTGA
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| Protein seq | MKIIFVFALLAIAACSATAQFDVLGQNIRQYQVQSPLLLQQQVLSLYNEFVRQQYSIAASPFLQSAVFQLRNNQVLQQLRLVAQQSHYQDINVVQAIAQQLHLQQFGDLYIDRNLAQAQALLAFNLPSTYGIYPRYYSAPGSITTLGGVLY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.729145 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0219400 | RBH | 0.0 | 0.0 | 2.855104 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g11900 | SBH | 0.0 | 0.0 | 0.271090 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0219400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0007470 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0007440 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0007330 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0007270 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0012160 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0228300 | SBH | 0.0010895 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0011870 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0237600 | SBH | 0.024763 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0012080 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0011980 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0012110 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0007550 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0007380 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G011820 | SBH | 0.0 | 0.0 | 0.369628 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0007300 | SBH | 0.0 | 0.0 | 0.0 |
