Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g11900 | OGI:07018710 | 8/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:6609124-6609689 | ||||||||
| Gene Symbol | Prol-20, pro13b.1, PROLM19 | ||||||||||
| DNA seq | AAATATGAAAGATAATTTTATTTCTATTTATATCACCTCAAGTTTCACATGTCACATACGATGATACCTGAGCTTATATTTTCACTTCCGAACTACAATATTGTGAAAATTCAGTACAAGACACCGCCAAGGGTGGTAATGCTACCAGGTGCACTATAGGACCAAGGGTAGATACCATATGTAGATGGCAAGTTAAAAGCCAACAGTGCTTGAGCTTGAGCCAGATTCCGGTCAATGTAGAGATTGCCAAACTGCTGGAGGTGTAGCTGGTGCGCTATGGCCTGGACAACGTTAATGTCCTGGTAGTGAGATTGTTGCGCCACCAGCCTGAGCTGTTGCAAGACTTGGTTGTTTCTCAGTTGAAACGCAGCTGATTGCAAGAAGGTGCTTGCCGCAATGCTATACTGCTGCCTTACGAACTCATTATATGGGCTAAGCACCTGTTGCTGTAGCAGGAGAGGCGACTGCACCTGATATTGCCTAATATTTTGACCTAAAACATCAAACTGCGCAGTGGCGCTGCATGCAGCAATAGCAAGGAGAGCAAAGACGAAAATGATCTTCAT
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| CDS seq | ATGAAGATCATTTTCGTCTTTGCTCTCCTTGCTATTGCTGCATGCAGCGCCACTGCGCAGTTTGATGTTTTAGGTCAAAATATTAGGCAATATCAGGTGCAGTCGCCTCTCCTGCTACAGCAACAGGTGCTTAGCCCATATAATGAGTTCGTAAGGCAGCAGTATAGCATTGCGGCAAGCACCTTCTTGCAATCAGCTGCGTTTCAACTGAGAAACAACCAAGTCTTGCAACAGCTCAGGCTGGTGGCGCAACAATCTCACTACCAGGACATTAACGTTGTCCAGGCCATAGCGCACCAGCTACACCTCCAGCAGTTTGGCAATCTCTACATTGACCGGAATCTGGCTCAAGCTCAAGCACTGTTGGCTTTTAACTTGCCATCTACATATGGTATCTACCCTTGGTCCTATAGTGCACCTGGTAGCATTACCACCCTTGGCGGTGTCTTGTACTGA
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| Protein seq | MKIIFVFALLAIAACSATAQFDVLGQNIRQYQVQSPLLLQQQVLSPYNEFVRQQYSIAASTFLQSAAFQLRNNQVLQQLRLVAQQSHYQDINVVQAIAHQLHLQQFGNLYIDRNLAQAQALLAFNLPSTYGIYPWSYSAPGSITTLGGVLY |
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| Function | Prolamin PPROL 14P [UniProtKB/Swiss-Prot:Q42465] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g11900 | LOC_Os07g11900.1 | Chr07 | 6609124 | 6609689 | - | MSU_osa1r7 | ||
| CDS seq | ATGAAGATCATTTTCGTCTTTGCTCTCCTTGCTATTGCTGCATGCAGCGCCACTGCGCAGTTTGATGTTTTAGGTCAAAATATTAGGCAATATCAGGTGCAGTCGCCTCTCCTGCTACAGCAACAGGTGCTTAGCCCATATAATGAGTTCGTAAGGCAGCAGTATAGCATTGCGGCAAGCACCTTCTTGCAATCAGCTGCGTTTCAACTGAGAAACAACCAAGTCTTGCAACAGCTCAGGCTGGTGGCGCAACAATCTCACTACCAGGACATTAACGTTGTCCAGGCCATAGCGCACCAGCTACACCTCCAGCAGTTTGGCAATCTCTACATTGACCGGAATCTGGCTCAAGCTCAAGCACTGTTGGCTTTTAACTTGCCATCTACATATGGTATCTACCCTTGGTCCTATAGTGCACCTGGTAGCATTACCACCCTTGGCGGTGTCTTGTACTGA
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| Protein seq | MKIIFVFALLAIAACSATAQFDVLGQNIRQYQVQSPLLLQQQVLSPYNEFVRQQYSIAASTFLQSAAFQLRNNQVLQQLRLVAQQSHYQDINVVQAIAHQLHLQQFGNLYIDRNLAQAQALLAFNLPSTYGIYPWSYSAPGSITTLGGVLY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.271090 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0219250 | RBH | 0.0 | 0.0 | 0.950651 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g11910 | RBH | 0.0 | 0.0 | 0.484028 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0219250 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0007460 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0007430 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0007330 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0007260 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0012160 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0097500 | SBH | 0 | 0.1517725 | 1.2523095 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0011900 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0237600 | SBH | 0.024763 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0006750 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0012000 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0012110 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0007570 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0007380 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G011820 | SBH | 0.0 | 0.0 | 0.369628 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0007300 | RBH | 0.0 | 0.0 | 0.0 |
