Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0012080 | OGI:05039880 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:15759142-15765549 | ||||||||
| Gene Symbol | Prol-10, pro13b.16, PROLM12, Prol-12, pro13b.18, OsEnS-76, pro13b.19, pro13b.20, Prol-22, pro13b.3, PROLM22 | ||||||||||
| DNA seq | atgaagatcattttcgtctttgctctccttgctattgctgcatgcagcgcctctgcgcagtttgatgttttaggtcaaagttataggcaatatcagctgcagtcgcctgtcctgctacagcaacacagcttagcccatataatgagttcgtaaggcagcagtatggcatagcggcaagccccttcttgcaatcagctgcgtttcaactgaGaaacaaccaagtctggcaacatctcgcgctggtggcgcaacaatctcgctatcaggacattaacattgttcaggccatagcgcagcagctacaactccagcagtttggtgatctctactttgatcggaatctggctcaagctcaagctctattggcttttaacgtgccatctagatatggtatctaccctaggtactatggtgcacccagtaccattaccacccttggcggtgtcttgtaatgagttttaacagtatagtggttcggaagttaaaaataagctcagatatcatcatatgtgacatgtgaaactttgggtgatataaatagaaataaagttgtctttcatatttaaataccatgcctctataaggatatcctagcatgttgtcgtgactaattccatcatcggtactctacaattttactgtgtgcttacattcgatccgaagctactttgtttttaagatataaatggagcgtataaagcatttccgtccttttattccaataagaacaaacacaaagcacatatggaaaatactaaatccactacaacaaaatcatagaccatacaaagcaggtaaagatgtagcaatccacattgattcttcgtccactactacaacaagcgcatatgaaaggccgcatatgcatgatcattgtgaatatgacatgcccttgtcgagcaaacgtgtcacttcatgcaaatatgttgtttcaagcgacatcaatatatggttacaaaattttaaacattggtatattaatgactttcatatatgcatattaatttcaattgaaagacaTCttgttgtccatcattcctaacaagaggtagtgtacaaggcattatttagttgagctctcgctcactttgcatcacagaagcataacctagacattgctaattcattatagaatcaaaaactgcggcagcaacaatgagggtaaaaactagaaagaaggatttattatgttccttagtttattcagccacgaaagactgacttaaaaaaatgtacacttcttccaaagtgaaaattatgagacgtcttacttatggaatgctcctacacactgatggttcttgctgacccctcgtttctatgagaagtttattctaacataccaagtcgatagtttactgcaaacaaaatggataataaacctgatgtttcaacaaaactacaggaactcacgcatgatgtacccaaaggtaactggttcttgacacactacaaatctgtggtagtccttttccatctcgaagacgaatcaacgctgtgtttagaatcagctgttcccaacatgcgaattgcgcacagaaaacggagcgctccattagagcgtgattaattaagtattagctttttttttcaaaaatgggtccatatgattttttgaagcaacttttgtatagaaaccttttgcaaaaaacacaccgtatagaagtttgagaagctttcgcgcggaatacgatggagatgggttgggaaccctagattccaaaCacagcccaagtctatccaaaatgtttagacaagaaaatacgtaactagttggtttacagaaatacaaattagatcagtcctgcactacaagtagagtaaagtggtgatttctcttaaatctctcaaatggtgatttaagaattcagtgcaaacctaatccttgctataatcaaatgttcggtaccgcatcaacggaacaataaaaagcgcctggcgtaccataattttgtcattcttgttgaaatttgtaatttaagatgtatgaggccacacgaccttaatgttcaacgtgtcatgcattagtgaaataatagctcacaaaacgcaacaaatatagctagataacggttgcaatccttaccaaactaacgtataaagtgagcgatgagtcatatcattatctcccgcctgctaaccatcgtgtacaccatccgatcccaaaaatgacaacttctagggatgaacctggacaaggtttggggtttagggatgaatctggacaaatgattgttcaggttcatccgtagatgttggtttctccttacgggacggaggaagtatatgtgatggacacaaaagttactttcatgatgaaaccaaaggggatttgttggggcacctaatagaacatctgtccaaatggcatgactcacttatatcctaataggacatccaagaaaaactaacactctaaagcaaccgatgaggaattgaaagaaaatacgtgctaccgcgtctataaattgacaagcgcaatggaaaccctcctcatcgttcacacagttcaagcattatacagaaaaatagaaagatctagtgtcccgcagcaatgaagatcattttcgtctttgctctccttgctattgctgcatgcagcgcctctgcgcagtttgatgttttaggtcaaagttataggcaatatcagctgcagtcgcctgtcctgtgtcacgcccagaaattcactagtaatttccgaacttatttgtgcataaaatcctcgtccaggaatcagccgaggtacacaaactgacaatttaatatacagattcatcaaattaactaaaacgataaatacttactcaagaggcacttagtcctcatcaagaagaaaactgcagcggaaaaataaaaatctagcgaagctccggctccactcccacaggcagctcaactggggtataagccaaacgtcttctccttctggatcctttttcttcaactgaggttgattgattattgcaagaatgagcatatgacatactcaacaagccacacaacaattatgcaagtgcacaaggataccaaaggatggcataatataggctcaattgcgaaagcagcatttagcaaaacatttaagacaaataaaacagtaaagtaattattcctcaattttaatcaacactgaacagcacacccatgctgcacaggcccaaccatcctgaacaaccatacccagctgaacagatctaactccaaaccaggagctaagcaaattattaccagttaaacatcaataattattgtgagaggtgtgagactaatcacgaaaaacattgctcaactCGcccataaccgcgggcacggctattcgaatagttttactctggccaaagatgtaccactgtacccacaagacacacctcaacatcatgtcaaccatgcgtcgcgatactggaaagtacccgaatagaggctgacattatcccctgcataacacaactcaccacagtgcaccattcctggatcataatcaccccctctacaaccagaggcatggactccccagcgacccccatggacttctcgccacttcacagtctggcactataatgaatcatgctatacaagataaagccgttgcccacgctggcttgtggttggtacggttaatgtttcacaacagtagctcgcgaaccggtccttaattgtcatgagcacaaccatcaaaaccatatgctcacaacccaccttaaccaggttttaattatcaattaattaacatcacacgattaaccatcgtgagctaccattaaaaataaccataataataatgtagtatatataattcatcccattagtgagctaatgtttctaagcatggctaagcaattatatatataacatttagctgaaccaaaccaatacataaggttcaagctaatcaattttattacccaaggtatcaaggaatagggcattcaaatgcaaattggccataacaaaggaataggttcacaccacccggtgacattcgaaaataaatgcacagttgaaataaatagagaatttaaatataggatcaacatgctcaaaggattgtgtgtttaggatctgtgtgacttgccttgcaataatcggtcttcaattaatcttcttgatcacttccgacgcactcacgaaccttcgcaacgacggaaacgacaagctaatacgcaaaacaaagaaaaagactaataaaaaccaaataaacagtacataaaaagtaaacaaacatgtagatcataattttagatgaattatgagacttgaacggcctcattctgacttcaaatgaatttattatgaattttacaagatcaaatctaattaaagcccaattaaaaagaattaaataaatttaattcaattcatggacaattttaatatgtagatctttattttagaagaatttagaaacttgaaccacctaaaacggatctacggttatttagatatgattttccaaagatttaaactattagagaaaaggaaaaaggaaaagaaaagggaacgatgacgtcagccctggtagagatgacgtcagccctagggttgacgtcatgctgacgtcggcacggcggccggctcgggcacgcgagctcgccggcgattgggacctcggccgggactttggagcacaccaacgcaaagaggacgacgaggcgaacccgatggtacccaccccgacacgaggcgatgcacgacggcggccggcgacgaagaagaaggcgacggcggctcgggttagcggcgacggcggcgctccggtgatcgacggcgcaaaaggaggggcggccgagcttctccttgctcccgtgcacctcacggtggtggcggcgaccgacggcgatgacggaggcggcgcgacacggccgaagatcgccggcgacggctagcggctagggcaacggcggcggcgctacaagcgacgagagggctcgggacttggggcaaacgaaagaggagatcaaggggaagctatatatgggctcaaatcgaagagaccaagccgcaaacggaaggaattgaatcgggaagaacacggactcggttttggagagataaaacaaaacgaactcgattcgaatccaaatcgcaacgaattcctttgtttcttgaggggaaagaaagaggagattgagaggaataaaatccctcaatcaatcggagaagaccgagtcggatttggccgaattgagagaagaaagggcggctagggtttcggctcggcggcggcggcgtccggaggaagaagacgatCccgacaggtgggccccacctgtcggtgactgagagagaggaggggcgcgggctggcgtcggcttgggccggcgtgggccgagcgcgggagaagagagagaaagagagagaagttgggccggaatcggcccaacggcctaggagaggattttaaaaactttttcaattaaaataattcgtgaaatgtttcatttattaaaaatactttctttgctcaaataattcccagaaaattctagaaaatagaggagcaagcatagtatttaataaaattttatctagctcatttttatattgagatttagcaaattaaaagaaagatcttctcttttaaacttttaaaattatttctattaattccttttaaacaacaatttataatttgatgattttaaacaagaaaaactcttaaaaaattataattaggtcatttatatgattattttaatatttaaataattgctgaacttctctttgtatgcttaaaattaataattgagctccgaaaaatccgagaaaattccagagagtataattaaccacggagaatttaataaaaattaaatccatccatgctttatatttagaaaattttatttcccacatttaacttcacttgtaaattaatgaacatttaatataaattctattaataatttattaaataatttataaatcctgaaacgaaaatcaggatgtgacatcctgctacagcaacaggtgcttagcccatataatgagttCGTAAGGCAGCAGTATGGCATAGCGGCAAGCCCCTTCTTGCAATCAGCTGCGTTTCAACTGAGAAACAACCAAGTCTGGCAACATCTCGCGCTGGTGGCGCAACAATCTCGCTATCAGGACATTAACATTGTTCAGGCCATAGCGCAGCAGCTACAACTCCAGCAGTTTGGTGATCTCTACTTTGATCGGAATCTGGCTCAAGCTCAAGCTCTATTGGCTTTTAACGTGCCATCTAGATATGGTATCTACCCTAGGTACTATGGTGCACCCAGTACCATTACCACAcccttggcggtgtcttgtaatgagttttaacagtatagtggttcggaagttaaaaataagctcagatatcatcatatgtgacatgtgaaactttgggtgatataaatagaaataaagttgtctttcatattt
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| CDS seq | atgaagatcattttcgtctttgctctccttgctattgctgcatgcagcgcctctgcgcagtttgatgttttaggtcaaatcgcctgtcctgctacagcaacacagcttagcccatataatgagttcgtaaggcagcagtatggcatagcggcaagccccttcttgcaatcagctgcgtttcaactgaGaaacaaccaagtctggcaacatctcgcgctggtggcgcaacaatctcgctatcaggacattaacattgttcaggccatagcgcagcagctacaactccagcagtttggtgatctctactttgatcggaatctggctcaagctcaagctctattggcttttaacgtgccatctagatatggtatctaccctaggtactatggtgcacccagtaccattaccacccttggcgTCTGGCAACATCTCGCGCTGGTGGCGCAACAATCTCGCTATCAGGACATTAACATTGTTCAGGCCATAGCGCAGCAGCTACAACTCCAGCAGTTTGGTGATCTCTACTTTGATCGGAATCTGGCTCAAGCTCAAGCTCTATTGGCTTTTAACGTGCCATCTAGATATGGTATCTACCCTAGGTACTATGGTGCACCCAGTACCATTACCACAcccttggcggtgtcttgtaatgagttttaa
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| Protein seq | MKIIFVFALLAIAACSASAQFDVLGQIACPATATQLSPYNEFVRQQYGIAASPFLQSAAFQLRNNQVWQHLALVAQQSRYQDINIVQAIAQQLQLQQFGDLYFDRNLAQAQALLAFNVPSRYGIYPRYYGAPSTITTLGVWQHLALVAQQSRYQDINIVQAIAQQLQLQQFGDLYFDRNLAQAQALLAFNVPSRYGIYPRYYGAPSTITTPLAVSCNEF |
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| Function | Prolamin PPROL 14E [UniProtKB/Swiss-Prot:Q0DJ45] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0012080 | OsLima_05g0012080.01 | Chr05 | 15759142 | 15765549 | + | NAM | ||
| CDS seq | atgaagatcattttcgtctttgctctccttgctattgctgcatgcagcgcctctgcgcagtttgatgttttaggtcaaatcgcctgtcctgctacagcaacacagcttagcccatataatgagttcgtaaggcagcagtatggcatagcggcaagccccttcttgcaatcagctgcgtttcaactgaGaaacaaccaagtctggcaacatctcgcgctggtggcgcaacaatctcgctatcaggacattaacattgttcaggccatagcgcagcagctacaactccagcagtttggtgatctctactttgatcggaatctggctcaagctcaagctctattggcttttaacgtgccatctagatatggtatctaccctaggtactatggtgcacccagtaccattaccacccttggcgTCTGGCAACATCTCGCGCTGGTGGCGCAACAATCTCGCTATCAGGACATTAACATTGTTCAGGCCATAGCGCAGCAGCTACAACTCCAGCAGTTTGGTGATCTCTACTTTGATCGGAATCTGGCTCAAGCTCAAGCTCTATTGGCTTTTAACGTGCCATCTAGATATGGTATCTACCCTAGGTACTATGGTGCACCCAGTACCATTACCACAcccttggcggtgtcttgtaatgagttttaa
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| Protein seq | MKIIFVFALLAIAACSASAQFDVLGQIACPATATQLSPYNEFVRQQYGIAASPFLQSAAFQLRNNQVWQHLALVAQQSRYQDINIVQAIAQQLQLQQFGDLYFDRNLAQAQALLAFNVPSRYGIYPRYYGAPSTITTLGVWQHLALVAQQSRYQDINIVQAIAQQLQLQQFGDLYFDRNLAQAQALLAFNVPSRYGIYPRYYGAPSTITTPLAVSCNEF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0328800 | SBH | 0.0 | 0.0 | 6.605329 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g26620 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0329200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0012140 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0012180 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0012140 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0012170 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0012170 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0229800 | SBH | 0.0064945 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0011910 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0237600 | SBH | 0.024763 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0012090 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0012000 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0012120 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0012140 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0012180 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G011820 | RBH | 0.0 | 0.0 | 0.369628 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0012150 | SBH | 0.0 | 0.0 | 0.0 |
