Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g49180 | OGI:06083530 | 9/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:29798150-29801547 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGGACAAGCGAACTCCAATTTCAGCATTCACTTGACTTAATAAAAATATCAATTTTAGTACATGCCAGAGAAGAATATGTAACCCATAGACTGCGGATTCAGCACCACCGCTACTAATGGTTATCTTACAAAACCGCATCATTGTAAGGCACACCTACAATACCATCAGCAAGCATATGGGAAGACAGATCCCCTTACATGCTCTGGAGATACAACTCATCCAAACTTGTCGAATTAGAATACTGGAACTAACGAAGAAAAGGCTAATAAATTTCCCTGCCCAAACATGTATGTACAGATGACCGATGGCTGCTCAACCTGCAAACACAAGGTGAATGCCATTGCAAAGATCAGCCATACAAGAAAACATCATATTCTTTGATTGATAAAGTACTACCACACAAGCATAAGGTGGTGGTATGCACTATTGTTATGGCTAACTGTGAACAGGAAAAAGAGGGTTGGGAAGAATGATTACCTGTGTGTTCACCACCTGTAGAATCTGAAAAGTTATTTTGCTCAGAAGGGAGGAACGGTGACTTGCCATAATTGTCTAATATTTCTGCAAGATAAGTAAATGTGGAGAGCAAACAAAAGTATGAGGAATGAAAAATGGTACTCAAATCAGAAAGCAAAATAAATCAATATTGTCATTAGAATGTACCTGTGCTTTGACTGAAATCCTCTGGTAGGTCTGAAAAAAAATTTCGGGGAAGCTGACTCAAGAAGCCAAACGATGATGATTCAATATCCAAAATTGAATCATCCAGAGGTTGCCCATTCAACTCTGAACTGCTAAAGGATCCACCAGATGCATCACCTATTGACTGGCATGATTCCAGGAAAGCATTCCCGCAGAAACCAAAATTACCATTGCTCGAATAGCCTGATTCCGTCTTAATAGTCGTCCCATTTTCCACACCAAACAGCACAGAATTAGCATTCTGCACTGGAAGCAAATTGGAAGCATCCATGCTACTATGAAGGCCCTGAATGTCTTTACCAGCATAAATTAATTGATCGCTGGATTGTGTGCGATCTACTATGCCACTGGAATTTCCATTGCACATTACATCATCTGGCATTGCAGGCATCGGAGTAGACTCTGATAAAAAGCATGGATTTTGCTTCACTGAAACAAGGAAAACAGAAGGCCATATTAAAATGAAACAACCCCGTAAGAGGACAGTCTGTACTCAACTAAATGCCTAGCCCTGCAAACAAAGAAAATAAAGAATGGAAAGTAAAGGCAAGCAAATATCTTTCTCTTGAGCAACCGTGTTGTGCTCACCTAATAAACACAAACTTCCTGAGCTTACACTTGGAAAAGATCATTTTCAGAAACATTAAATTCTTCAGGCTCCCAAAGAACTAATTATTTGTTCACCATTATACACTCACTTAAACAATGGGGTATTGCATTACTACTCCAGTTATGCTCATATCAGTCATTGCTAGAAGCTTAAGTCTGAAAAAAATGCCTTACATAGGTTTGAGTTGGAACCATTGGGAAGAGGCATAGAAGAAGGCCCTGGATGATATTCTTTATTTATAATCCTTAACTGGTCCTCAAGAAGTTTGTTGAAGGCTGTTATTTGGTTCTTAAGCATCAACCTCAAATAGTATGCTTTGAAAAACTCACGATTATTCTCCTCGAGTTTCTGCCAAACTGGAAAGAGCAAAAAGAAAATCAACCAGATGTTAACAACAGCCTACAAAAAGAAAATCAACCAGATGTTAACAACAAAAATGATCTAACAATAATAAAAGGGCGCAAATCAAGATAAACATAAACAGTTTCCTAGTTATGTTCCCTTTCTGTTTGACAGAGCCCTCCTGAAACATAAAGTAGGTTCGTAGAGGGGACGGAAAAAAGAATATTTAGGCAGCATATAACAGTGTTTATTGCAAAATTGATGACATGGTTTTTTACCTAAACCATATTTGTGTTGAGTGAACCAGCATATGTCACAATTCCACAATCATAATTGTAACAAGATAGCAACCCATCCAACTATGCATGACCTGCGCTGTTACTAGCCAGTTCTGAAACCTAAGACCAACTTGCAAGTAAGCTAAATGAAACTTTTGGCATACAAGGTAAGAGCACTACCATGCTGTGTAACACTAGGTTCTATTTTTGCCTCACGGGAAAGGGCATCAACAACTTCTTTCTTGTCCATGTATAGCTGAAGGCAGCAATGGATAAGATTCTGGACCTGGAACAAAAGTTAGCAACAAGAGTTATCCATCAGCTCAATTGAATATGTATTAATTGTTCAAGCATGCTACACATAAAATAAACTGTGTGTTATCCAAAGGTAGTTTCTAAGCATGATTCAGCATAAACGAATGCAAAGAATATCCATAACACGGACCTTGTGTGCTTGCATGCATTGCAGGCTGAACAAGTAATTAGAACCCTACTAGGTATCACAATCCGAGATTATCCCTACCCTACTAACTAATTGGCAGGTGATCACAAACCCTAGAATGGCACTGTCACTATAAGCACGCAAATCAAACTTGAGTGGCACTGTATCCTCTGCGAAGAGGCCAAGAACCAACGAATTCAGTAGCAAAACCCAACAAGAATCAACAAGCGTTCTACATGAACCAAACAAGGCACTGAACTACTACTGACGATCAGCTGTATGTCCTAACGACAGACCTTGTCGACGTCCGCTCCTGACATGTCGCCGGCGCTTTCTCCACTCCTCCTGCCCTAATCCCCTCCTGAACCTTTCCCCTGAAAAATCCGCAAGAAGCAGTGCTAGCATCAGCCAACAACAACACAAGATTCAGGCCCAGTTCACGGATCATACCTGCCCTGGTCTTCCCCGCGAGATAATTTCAGCTCTCCCTTGCAGCGAGGCGGAGAAGAGAGAAAACTCCGGCAGTGAGGAGATCACGAAGGGGAGGAGCGGGGAGAGGAGCGGAGTAGCCAGCCACCAGCTCGAGATGCAAGGGAGAAGAGTAGGGAAAAGGAAGGGGAAGGGGAAGTGGAAGTGGTGGTGGGCTGAAGTGGGAGTGGGGAAGAGGAGAGGATTCCTAATCCACGGCTCTGTCCGTTCTGGAATCTGGGGCACCAGAAACACTTCTGCACCAGTTCTATGGGAACCCTTTTTTTATACTGCCTGCAAGTGATGGAGAAGCTTTCTGCACAGAATTAATAAATTGCAGTCGATTCAGTCCAATTAGGCCATAAAAAGTGCCTTAACTGAAAGTGTGCTCAATGATTGGATGCAATTAGCAATAGGAGAAAAAGATATACAAATATACACATATGAACTTACTGACTGATGCATAAGAAATTGCAAGGGGGCACAAGAAAAGGGAAAGAAAGTGAGAAGTGGAGGCACTTTCCAGCTAGGTTGCTAACCGGCCATCCTGTCACC
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| CDS seq | ATGTCAGGAGCGGACGTCGACAAGGTCCAGAATCTTATCCATTGCTGCCTTCAGCTATACATGGACAAGAAAGAAGTTGTTGATGCCCTTTCCCGTGAGGCAAAAATAGAACCTAGTGTTACACAGCATGTTTGGCAGAAACTCGAGGAGAATAATCGTGAGTTTTTCAAAGCATACTATTTGAGGTTGATGCTTAAGAACCAAATAACAGCCTTCAACAAACTTCTTGAGGACCAGTTAAGGATTATAAATAAAGAATATCATCCAGGGCCTTCTTCTATGCCTCTTCCCAATGGTTCCAACTCAAACCTATTGAAGCAAAATCCATGCTTTTTATCAGAGTCTACTCCGATGCCTGCAATGCCAGATGATGTAATGTGCAATGGAAATTCCAGTGGCATAGTAGATCGCACACAATCCAGCGATCAATTAATTTATGCTGGTAAAGACATTCAGGGCCTTCATAGTAGCATGGATGCTTCCAATTTGCTTCCAGTGCAGAATGCTAATTCTGTGCTGTTTGGTGTGGAAAATGGGACGACTATTAAGACGGAATCAGGCTATTCGAGCAATGGTAATTTTGGTTTCTGCGGGAATGCTTTCCTGGAATCATGCCAGTCAATAGGTGATGCATCTGGTGGATCCTTTAGCAGTTCAGAGTTGAATGGGCAACCTCTGGATGATTCAATTTTGGATATTGAATCATCATCGTTTGGCTTCTTGAGTCAGCTTCCCCGAAATTTTTTTTCAGACCTACCAGAGGATTTCAGTCAAAGCACAGAAATATTAGACAATTATGGCAAGTCACCGTTCCTCCCTTCTGAGCAAAATAACTTTTCAGATTCTACAGGTGGTGAACACACAGGTTGA
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| Protein seq | MSGADVDKVQNLIHCCLQLYMDKKEVVDALSREAKIEPSVTQHVWQKLEENNREFFKAYYLRLMLKNQITAFNKLLEDQLRIINKEYHPGPSSMPLPNGSNSNLLKQNPCFLSESTPMPAMPDDVMCNGNSSGIVDRTQSSDQLIYAGKDIQGLHSSMDASNLLPVQNANSVLFGVENGTTIKTESGYSSNGNFGFCGNAFLESCQSIGDASGGSFSSSELNGQPLDDSILDIESSSFGFLSQLPRNFFSDLPEDFSQSTEILDNYGKSPFLPSEQNNFSDSTGGEHTG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g49180 | LOC_Os06g49180.1 | Chr06 | 29798150 | 29801547 | - | MSU_osa1r7 | ||
| CDS seq | ATGTCAGGAGCGGACGTCGACAAGGTCCAGAATCTTATCCATTGCTGCCTTCAGCTATACATGGACAAGAAAGAAGTTGTTGATGCCCTTTCCCGTGAGGCAAAAATAGAACCTAGTGTTACACAGCATGTTTGGCAGAAACTCGAGGAGAATAATCGTGAGTTTTTCAAAGCATACTATTTGAGGTTGATGCTTAAGAACCAAATAACAGCCTTCAACAAACTTCTTGAGGACCAGTTAAGGATTATAAATAAAGAATATCATCCAGGGCCTTCTTCTATGCCTCTTCCCAATGGTTCCAACTCAAACCTATTGAAGCAAAATCCATGCTTTTTATCAGAGTCTACTCCGATGCCTGCAATGCCAGATGATGTAATGTGCAATGGAAATTCCAGTGGCATAGTAGATCGCACACAATCCAGCGATCAATTAATTTATGCTGGTAAAGACATTCAGGGCCTTCATAGTAGCATGGATGCTTCCAATTTGCTTCCAGTGCAGAATGCTAATTCTGTGCTGTTTGGTGTGGAAAATGGGACGACTATTAAGACGGAATCAGGCTATTCGAGCAATGGTAATTTTGGTTTCTGCGGGAATGCTTTCCTGGAATCATGCCAGTCAATAGGTGATGCATCTGGTGGATCCTTTAGCAGTTCAGAGTTGAATGGGCAACCTCTGGATGATTCAATTTTGGATATTGAATCATCATCGTTTGGCTTCTTGAGTCAGCTTCCCCGAAATTTTTTTTCAGACCTACCAGAGGATTTCAGTCAAAGCACAGAAATATTAGACAATTATGGCAAGTCACCGTTCCTCCCTTCTGAGCAAAATAACTTTTCAGATTCTACAGGTGGTGAACACACAGGTTGA
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| Protein seq | MSGADVDKVQNLIHCCLQLYMDKKEVVDALSREAKIEPSVTQHVWQKLEENNREFFKAYYLRLMLKNQITAFNKLLEDQLRIINKEYHPGPSSMPLPNGSNSNLLKQNPCFLSESTPMPAMPDDVMCNGNSSGIVDRTQSSDQLIYAGKDIQGLHSSMDASNLLPVQNANSVLFGVENGTTIKTESGYSSNGNFGFCGNAFLESCQSIGDASGGSFSSSELNGQPLDDSILDIESSSFGFLSQLPRNFFSDLPEDFSQSTEILDNYGKSPFLPSEQNNFSDSTGGEHTG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.335634 | 1.132619 | 1.080208 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g04450 | RBH | 1.127206 | 1.589719 | 1.467687 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0028440 | RBH | 0.359876 | 2.383157 | 2.051016 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0028260 | SBH | 0.239439 | 0.231900 | 0.901249 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0028400 | SBH | 1.196730 | 3.488731 | 9.460806 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0027990 | SBH | 0.061658 | 0.289238 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0028480 | RBH | 4.237380 | 1.809937 | 11.559981 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0468400 | RBH | 11.879209 | 26.7710655 | 27.359151 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0027850 | RBH | 0.340661 | 0.234173 | 0.692426 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0451900 | RBH | 13.3077195 | 18.624172 | 28.8941365 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0028390 | SBH | 0.153788 | 0.185298 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0028440 | SBH | 0.972853 | 0.791662 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0028030 | RBH | 2.723677 | 6.419896 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0028690 | SBH | 0.203374 | 0.657310 | 2.168358 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0028310 | RBH | 0.121252 | 2.489928 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G028190 | SBH | 1.030676 | 1.154695 | 2.941664 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0028270 | SBH | 1.240951 | 17.683214 | 2.880507 |
