Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g42410 | OGI:06072110 | 6/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:25489102-25492177 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCGACGATGAACAGCACCAACCCGACATTGGTACGGTATAGCAGTGTCAGGCTGCAGGCTGCCGGAGAGGAGCGCCCCAACGCCGGCGCCGTCGAAGCTCGCGGCAGCCATTGATGGATTTTTTTTCCTAATCTTTGAGTCTTTTTTTGATCGTATCTCTTACTAATTTGTTTTGTTTATGTTTTTGCATTTGCAGCACCTTTGCAGTCCTGCAGCAGGTGCGAATGTTTCAGGTGGTGGTGGCTCTAGTTCTGTTTTCACTAGAGCCCTTCATGCTGCTCAAGCAAGAAAGATGCATCAGCGGAAGCAGCTACCTGGTTCTGCAGTATCAAATTCCAAAAAAATAAGTGGCATCAAGGGTAAAAAGGTAGTACAAGAAAAAATTTACACCAGGTGCACTCCTACTATTCTCTCAGATCTATTCTCAGGTTTTGGTGATCAGCAAAAAGAGCTAGTGAAACAGATGGAGTTTGATGGGTTGCTTTCCATGAGGCTGACTAAACTGAACAAGCAATTCGGAGCATGGATTCTGTGCAAGCTAGACCCATCATCAGGTAATCTGTTTGCGGGATCTAGACATGAAATTTGTTTGACATGTGAGGATGTCAGCCTACTTTTGGGAATCCCTTGTGGACGGAAGGAGATTTTGCCTGCAATAAAAAATGAGGTAAAAGATGTTAAGGCTTATATGTGTGAAATCTTTGAGAAAGATTCCTTTGATGGACTTACCATTGTAACAATTCAGAGGATATTGGAGAAAAAATTTAACAGGACGATGACTGTTCACGAACAGATTGTATTCAAGACTGCTTTTATAATCTTCGTTGTAACCAAATTCTTGGCTCCTCAATCTGTTAACAATCACATATCTATAAGGTATATGAAGGCTTTGGTTGATGTAGAAAATATTCACAAGTACAACTGGGCGGAATTTGTTTTGCATGACATCAAAGATGCAGCAGCAGCATTGCAACACAAAATACGCCATCGAAAAAGCATTGGTTACATCAATGGCTGCATTATACTACCTCAGGTGAGATTATCCTATTATTCGTTCGAATTATTTGCCTTTTACTTTCTAATATACTCGCAACATCTTTTCACATGCTATAATTTATACTGCTCAGCTTTTTTATCTGGACAATCTGGATTTCGGGACGGACACTCCCGAGCAGGAAAACATTCCAAGGATTGGCGTGTACAATGACTCCATGATAGCAGAATTCATTGAGAGGGATGTAATTCTCAAGAACCGGAATCCTTTCCCCGCGTATGGAAAGATGAAGGTAAAATCAACTCTCCTGCCGGTAGAGTATTCTTGTTGAAATTTCCCTTGTGCAGAAACTTCAGACTATTGACATTTTTTTTGGGTTTCAGCTGCGAAACAAACATGATGAAAAATACAATCTTGGCCATCATACGGGTGCAATAGAGGTGCAATCTCATGTAGTTTGTCAATCTATTCAATATAAAAAGAATCCATTTTTCCATAAGAATTGTTGATATATCTGTACACAGGCTATCCATGTGGATCGTACCTACGATGCCAGGTCTGACATCGAGCCCCCAAGCTTTAATCTAGGAATAACACAAGATATCGAAGAAGCAAACATGGTGGCATGTACCCCAGGTCATGACATCTCCAATGTGGCTGAAGACTCTGACAAAGAACAAGAACTCAACTTTTTAGCACGTACCCCAGATCAGCCAATCTCAAAGTCAGTAGATGCCTCTGACAAATCCGGAGAAGGTAATGCAGTGCACAAAACTCCCTCTTCGCATGGAGGTAATGATACCCACAAGCCTGTATCAGTTTTTCATTTTCATTCATAACCAACCACATGCACATAATATGTCTCACTCTTACTGTTCTGTCTCATAATAGGTTACCAACAAACTAAACTTAGTAGTTTCTCTCCGTACTCTATGTTGAAAGAGACGAGTGGGGCGAGGATTTTCATGCGTGAGGAGTACGCATGTACAAAGCTCCCACCTAAATCCAAGAGGAGAATTATCGGCGGTCCTTCTGATATCCTATTCGATCGGCCAAAGAGGTCGATTAAACCAAGCCATTCGGTGAAATCACCATTTCTGAGCAAGCAACACTCTTTCGTCAGGCATGACCAGAAGGCACTTGATGATTTATACACATATGCAATTTCAATCACTGATGCAGAAGCTCTTAAGTAAGCCACCTATCTGAAACACTTGATGATTTATACACATATACAACTTCAATCGCTTATGCAGAAGCTCTAATGTAAGCCACCTACCTGAAATGTTCCTTTCTTTCACCACTAATTGTAAAGATATCACATTTAACAGGAAAATCTGGGTTCACATCTCCCAACCTGTCCCTATGTCATTAAGCCTACATGACATACAACAGGCTATTCGGCTAGACACTCAAATGCAAGAAGAAACATTCAATGTTGCAGTTCAAGTATTAGCAGCGGATGAGATACAGAGATTTGGAGGAACTGATTTTGTAGGCTGGAGACATTTCTTAAATCAAGATTTTGCAGTAAGTGCTTCCAATTACTCTAGACTATTTTAATTCTTAAATATGGTGTGTTTTAACACAATATGGCGCTATAGATGTTTGCAACAGCTGGTGATGACCAGTGGAACCCAGAGGATCATCTCCCCTCATTCAAAGATGACTCCCTGATACCATATGACGTACCTAGTTGCCACCTGGTTTGATAATTAACAGCATCTTGAAAAATTCAGTACATCAAGTGCAAATGTTCAGGCCACTAACTTTTGCAATGTCAATATTAATTTGCAGATATTTATTCCACTACTTCAACCACTGCACTATTCTCTATACGCATTTGATATGGAGAAAAAAAAATTATGCATTCTTGACCCACTGAGAGACGCCTCGAAAAGATCAGAGGATACAGCAGAAAGACACTTAAAAACAAAATTTCACATTTCATCTGCTCTGAAGGAGTGCATGAAGCTTGCATTTCCAGATTGGGACGAGGATATACCAAACTGGGTTTCTGAGTTCCCTTCGGCCATCCCAGCTATAAACAATAGGTTCCAGTTCATGCTCCCAATTTGA
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| CDS seq | ATGGCGACGATGAACAGCACCAACCCGACATTGCACCTTTGCAGTCCTGCAGCAGGTGCGAATGTTTCAGGTGGTGGTGGCTCTAGTTCTGTTTTCACTAGAGCCCTTCATGCTGCTCAAGCAAGAAAGATGCATCAGCGGAAGCAGCTACCTGGTTCTGCAGTATCAAATTCCAAAAAAATAAGTGGCATCAAGGGTAAAAAGGTAGTACAAGAAAAAATTTACACCAGGTGCACTCCTACTATTCTCTCAGATCTATTCTCAGGTTTTGGTGATCAGCAAAAAGAGCTAGTGAAACAGATGGAGTTTGATGGGTTGCTTTCCATGAGGCTGACTAAACTGAACAAGCAATTCGGAGCATGGATTCTGTGCAAGCTAGACCCATCATCAGGTAATCTGTTTGCGGGATCTAGACATGAAATTTGTTTGACATGTGAGGATGTCAGCCTACTTTTGGGAATCCCTTGTGGACGGAAGGAGATTTTGCCTGCAATAAAAAATGAGGTAAAAGATGTTAAGGCTTATATGTGTGAAATCTTTGAGAAAGATTCCTTTGATGGACTTACCATTGTAACAATTCAGAGGATATTGGAGAAAAAATTTAACAGGACGATGACTGTTCACGAACAGATTGTATTCAAGACTGCTTTTATAATCTTCGTTGTAACCAAATTCTTGGCTCCTCAATCTGTTAACAATCACATATCTATAAGGTATATGAAGGCTTTGGTTGATGTAGAAAATATTCACAAGTACAACTGGGCGGAATTTGTTTTGCATGACATCAAAGATGCAGCAGCAGCATTGCAACACAAAATACGCCATCGAAAAAGCATTGGTTACATCAATGGCTGCATTATACTACCTCAGCTTTTTTATCTGGACAATCTGGATTTCGGGACGGACACTCCCGAGCAGGAAAACATTCCAAGGATTGGCGTGTACAATGACTCCATGATAGCAGAATTCATTGAGAGGGATGTAATTCTCAAGAACCGGAATCCTTTCCCCGCGTATGGAAAGATGAAGCTGCGAAACAAACATGATGAAAAATACAATCTTGGCCATCATACGGGTGCAATAGAGGCTATCCATGTGGATCGTACCTACGATGCCAGGTCTGACATCGAGCCCCCAAGCTTTAATCTAGGAATAACACAAGATATCGAAGAAGCAAACATGGTGGCATGTACCCCAGGTCATGACATCTCCAATGTGGCTGAAGACTCTGACAAAGAACAAGAACTCAACTTTTTAGCACGTACCCCAGATCAGCCAATCTCAAAGTCAGTAGATGCCTCTGACAAATCCGGAGAAGGTTACCAACAAACTAAACTTAGTAGTTTCTCTCCGTACTCTATGTTGAAAGAGACGAGTGGGGCGAGGATTTTCATGCGTGAGGAGTACGCATGTACAAAGCTCCCACCTAAATCCAAGAGGAGAATTATCGGCGGTCCTTCTGATATCCTATTCGATCGGCCAAAGAGGTCGATTAAACCAAGCCATTCGGTGAAATCACCATTTCTGAGCAAGCAACACTCTTTCGTCAGGCATGACCAGAAGGCACTTGATGATTTATACACATATGCAATTTCAATCACTGATGCAGAAGCTCTTAAAAGCTCTAATGTAAGCCACCTACCTGAAATGTTCCTTTCTTTCACCACTAATTGTAAAGATATCACATTTAACAGGAAAATCTGGGTTCACATCTCCCAACCTGTCCCTATGTCATTAAGCCTACATGACATACAACAGGCTATTCGGCTAGACACTCAAATGCAAGAAGAAACATTCAATGTTGCAGTTCAAGTATTAGCAGCGGATGAGATACAGAGATTTGGAGGAACTGATTTTGTAGGCTGGAGACATTTCTTAAATCAAGATTTTGCAATGTTTGCAACAGCTGGTGATGACCAGTGGAACCCAGAGGATCATCTCCCCTCATTCAAAGATGACTCCCTGATACCATATGACGTACCTAGTTGCCACCTGATATTTATTCCACTACTTCAACCACTGCACTATTCTCTATACGCATTTGATATGGAGAAAAAAAAATTATGCATTCTTGACCCACTGAGAGACGCCTCGAAAAGATCAGAGGATACAGCAGAAAGACACTTAAAAACAAAATTTCACATTTCATCTGCTCTGAAGGAGTGCATGAAGCTTGCATTTCCAGATTGGGACGAGGATATACCAAACTGGGTTTCTGAGTTCCCTTCGGCCATCCCAGCTATAAACAATAGGTTCCAGTTCATGCTCCCAATTTGA
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| Protein seq | MATMNSTNPTLHLCSPAAGANVSGGGGSSSVFTRALHAAQARKMHQRKQLPGSAVSNSKKISGIKGKKVVQEKIYTRCTPTILSDLFSGFGDQQKELVKQMEFDGLLSMRLTKLNKQFGAWILCKLDPSSGNLFAGSRHEICLTCEDVSLLLGIPCGRKEILPAIKNEVKDVKAYMCEIFEKDSFDGLTIVTIQRILEKKFNRTMTVHEQIVFKTAFIIFVVTKFLAPQSVNNHISIRYMKALVDVENIHKYNWAEFVLHDIKDAAAALQHKIRHRKSIGYINGCIILPQLFYLDNLDFGTDTPEQENIPRIGVYNDSMIAEFIERDVILKNRNPFPAYGKMKLRNKHDEKYNLGHHTGAIEAIHVDRTYDARSDIEPPSFNLGITQDIEEANMVACTPGHDISNVAEDSDKEQELNFLARTPDQPISKSVDASDKSGEGYQQTKLSSFSPYSMLKETSGARIFMREEYACTKLPPKSKRRIIGGPSDILFDRPKRSIKPSHSVKSPFLSKQHSFVRHDQKALDDLYTYAISITDAEALKSSNVSHLPEMFLSFTTNCKDITFNRKIWVHISQPVPMSLSLHDIQQAIRLDTQMQEETFNVAVQVLAADEIQRFGGTDFVGWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQPLHYSLYAFDMEKKKLCILDPLRDASKRSEDTAERHLKTKFHISSALKECMKLAFPDWDEDIPNWVSEFPSAIPAINNRFQFMLPI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g42410 | LOC_Os06g42410.1 | Chr06 | 25489102 | 25492177 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCGACGATGAACAGCACCAACCCGACATTGCACCTTTGCAGTCCTGCAGCAGGTGCGAATGTTTCAGGTGGTGGTGGCTCTAGTTCTGTTTTCACTAGAGCCCTTCATGCTGCTCAAGCAAGAAAGATGCATCAGCGGAAGCAGCTACCTGGTTCTGCAGTATCAAATTCCAAAAAAATAAGTGGCATCAAGGGTAAAAAGGTAGTACAAGAAAAAATTTACACCAGGTGCACTCCTACTATTCTCTCAGATCTATTCTCAGGTTTTGGTGATCAGCAAAAAGAGCTAGTGAAACAGATGGAGTTTGATGGGTTGCTTTCCATGAGGCTGACTAAACTGAACAAGCAATTCGGAGCATGGATTCTGTGCAAGCTAGACCCATCATCAGGTAATCTGTTTGCGGGATCTAGACATGAAATTTGTTTGACATGTGAGGATGTCAGCCTACTTTTGGGAATCCCTTGTGGACGGAAGGAGATTTTGCCTGCAATAAAAAATGAGGTAAAAGATGTTAAGGCTTATATGTGTGAAATCTTTGAGAAAGATTCCTTTGATGGACTTACCATTGTAACAATTCAGAGGATATTGGAGAAAAAATTTAACAGGACGATGACTGTTCACGAACAGATTGTATTCAAGACTGCTTTTATAATCTTCGTTGTAACCAAATTCTTGGCTCCTCAATCTGTTAACAATCACATATCTATAAGGTATATGAAGGCTTTGGTTGATGTAGAAAATATTCACAAGTACAACTGGGCGGAATTTGTTTTGCATGACATCAAAGATGCAGCAGCAGCATTGCAACACAAAATACGCCATCGAAAAAGCATTGGTTACATCAATGGCTGCATTATACTACCTCAGCTTTTTTATCTGGACAATCTGGATTTCGGGACGGACACTCCCGAGCAGGAAAACATTCCAAGGATTGGCGTGTACAATGACTCCATGATAGCAGAATTCATTGAGAGGGATGTAATTCTCAAGAACCGGAATCCTTTCCCCGCGTATGGAAAGATGAAGCTGCGAAACAAACATGATGAAAAATACAATCTTGGCCATCATACGGGTGCAATAGAGGCTATCCATGTGGATCGTACCTACGATGCCAGGTCTGACATCGAGCCCCCAAGCTTTAATCTAGGAATAACACAAGATATCGAAGAAGCAAACATGGTGGCATGTACCCCAGGTCATGACATCTCCAATGTGGCTGAAGACTCTGACAAAGAACAAGAACTCAACTTTTTAGCACGTACCCCAGATCAGCCAATCTCAAAGTCAGTAGATGCCTCTGACAAATCCGGAGAAGGTTACCAACAAACTAAACTTAGTAGTTTCTCTCCGTACTCTATGTTGAAAGAGACGAGTGGGGCGAGGATTTTCATGCGTGAGGAGTACGCATGTACAAAGCTCCCACCTAAATCCAAGAGGAGAATTATCGGCGGTCCTTCTGATATCCTATTCGATCGGCCAAAGAGGTCGATTAAACCAAGCCATTCGGTGAAATCACCATTTCTGAGCAAGCAACACTCTTTCGTCAGGCATGACCAGAAGGCACTTGATGATTTATACACATATGCAATTTCAATCACTGATGCAGAAGCTCTTAAAAGCTCTAATGTAAGCCACCTACCTGAAATGTTCCTTTCTTTCACCACTAATTGTAAAGATATCACATTTAACAGGAAAATCTGGGTTCACATCTCCCAACCTGTCCCTATGTCATTAAGCCTACATGACATACAACAGGCTATTCGGCTAGACACTCAAATGCAAGAAGAAACATTCAATGTTGCAGTTCAAGTATTAGCAGCGGATGAGATACAGAGATTTGGAGGAACTGATTTTGTAGGCTGGAGACATTTCTTAAATCAAGATTTTGCAATGTTTGCAACAGCTGGTGATGACCAGTGGAACCCAGAGGATCATCTCCCCTCATTCAAAGATGACTCCCTGATACCATATGACGTACCTAGTTGCCACCTGATATTTATTCCACTACTTCAACCACTGCACTATTCTCTATACGCATTTGATATGGAGAAAAAAAAATTATGCATTCTTGACCCACTGAGAGACGCCTCGAAAAGATCAGAGGATACAGCAGAAAGACACTTAAAAACAAAATTTCACATTTCATCTGCTCTGAAGGAGTGCATGAAGCTTGCATTTCCAGATTGGGACGAGGATATACCAAACTGGGTTTCTGAGTTCCCTTCGGCCATCCCAGCTATAAACAATAGGTTCCAGTTCATGCTCCCAATTTGA
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| Protein seq | MATMNSTNPTLHLCSPAAGANVSGGGGSSSVFTRALHAAQARKMHQRKQLPGSAVSNSKKISGIKGKKVVQEKIYTRCTPTILSDLFSGFGDQQKELVKQMEFDGLLSMRLTKLNKQFGAWILCKLDPSSGNLFAGSRHEICLTCEDVSLLLGIPCGRKEILPAIKNEVKDVKAYMCEIFEKDSFDGLTIVTIQRILEKKFNRTMTVHEQIVFKTAFIIFVVTKFLAPQSVNNHISIRYMKALVDVENIHKYNWAEFVLHDIKDAAAALQHKIRHRKSIGYINGCIILPQLFYLDNLDFGTDTPEQENIPRIGVYNDSMIAEFIERDVILKNRNPFPAYGKMKLRNKHDEKYNLGHHTGAIEAIHVDRTYDARSDIEPPSFNLGITQDIEEANMVACTPGHDISNVAEDSDKEQELNFLARTPDQPISKSVDASDKSGEGYQQTKLSSFSPYSMLKETSGARIFMREEYACTKLPPKSKRRIIGGPSDILFDRPKRSIKPSHSVKSPFLSKQHSFVRHDQKALDDLYTYAISITDAEALKSSNVSHLPEMFLSFTTNCKDITFNRKIWVHISQPVPMSLSLHDIQQAIRLDTQMQEETFNVAVQVLAADEIQRFGGTDFVGWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQPLHYSLYAFDMEKKKLCILDPLRDASKRSEDTAERHLKTKFHISSALKECMKLAFPDWDEDIPNWVSEFPSAIPAINNRFQFMLPI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0517900 | SBH | 1.345377 | 0.845570 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g12480 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0517900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0020490 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0026390 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0020320 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0020320 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0020950 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0365700 | SBH | 0 | 0.0056075 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0020390 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0018890 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0019890 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0025430 | SBH | 0.453954 | 2.551353 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0021170 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0018680 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G018580 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
