Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_02g0025430 | OGI:06072110 | 6/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr02:25943318-25947066 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gatatttggaaggtaaatgacaaattcattaatttgggaagagaatagcagagaacatgaagccttgaaaaatgttgaataagaacaagacaaatattattgggacctaacaaattttagataataatgatgtaactgaatgtaatctttattttggcatgcttgcataacatgctcagatcttgttagataacttcaggcagtgaacgacgaagtccggcagaatagcttcgttgcctttgaatgacaataagttggacagaaattcctttcgaagatctcgttgatcctgttgttaatatagAaaaatatttattataaaaggaagctacttcaatgaaacttaagttgaacctagtgtgtacagaaaactcacagattttggggggttcacaaggcgagttccatcccagtttcgcatgtagtagagcacgtgaaaggcacattccagcctaccaaaattgttattattgtaatgaccatAaatgagtagaatggaaaaattaatttggatcaaattgggagcatgaactggaacctgttgtttatagctgggatggccgaagggaactcagaaacccagtttggtatatcctcgtcccaatctggaaatgcaagcttcatgcactccttcagagcagatgaaatgtgaaattttgtttttaagtgtctttctgctgtatcctctgatcttttcgaggtgtctctcagtgggtcaagaatgcataatttttttttctccatatcaaatgcgtatagagaatagtgcagtggttgaagtagtggaataaatatctgcaaattaatattgacattgcaaaagttagtggcctgaacatttgcacttgatgtactgaatttttcaagatgttgttaattatcaaaccaggtggcaactaggtacgtcatatggtatcagggagtcatctttgaatgaggggagatgatcctctgggttccactggtcatcaccagctgttgcaaacatctacagcgccatattgtgttaaaacacaccatatttaagaattaaaatagtctagagtaattggaagcacttactgcaaaatcttgatttaagaaatgtctccagcctacaaaatcagttcctccaaatctctgtatctcatccgctgctaatacttgaactgcaacattgaatgtttcttcttgcatttgagtgtctagccgaatagcctgttgtatgtcatgtaggcttaatgacatagggacaggttgggagatgtgaacccagattttcctgttaaatgtgatatctttacaattagtggtgaaagaaaggaacatttcaggtaggtggcttacattagagcttctgcataagcgattgaagttgtatatgtgtataaatcatcaagtgtttcagataggtggcttacttaagagcttctgcatcagtgattgaaattgcatatgtgtataaatcatcaagtgccttctggtcatgcctgacgaaagagtgttgcttgctcagaaatggtgatttcaccaaatggcttggtttaatcgacctctttggccgatcgaataggatatcagaaggaccgccgataattctcctcttggatttaggtgggagctttgtacatgcgtactcctcacgcatgaaaatcctcgccccactcgtctctttcaacatagagtacgGAgagaaactactaagtttagtttgttggtaacctattatgagacagaacagtaagagtgagacatattatgtgcatgtggttggttatgaatgaaaatgaaaaactgatacaggcttgtgggtatcattacctccatgcgaagagggagttttgtgcactgcattaccttctccggatttgtcagaggcatctactgactttgagattggctgatctggggtacgtgctaaaaagttgagttcttgttctttgtcagagtcttcagccacattggagatgtcatgacctggggtacatgccaccatgTttgcttcttcgatatcttgtgttattcctagattaaagcttgggggctcgatgtcagacctggcatcgtaggtacgatccacatggatagcctgtgtacagatatatcaacaattcttatggaaaaatggattctttttataTtgaatagattgacaaactacatgagattgcacctctattgcacccgtatgatggccaagattgtatttttcatcatgtttgtttcgcagctgaaacccAaaaaaaatgtcaatagtctgaagtttctgcacaagggaaatttcaacaagaatactctaccggcaggagagttgattttgagaattacatccctctcaatgaattctgctatcatggagtcattgtacacgccaatccttggaatgttttcctcctcgggagtgtccgtcccgaaatccagattgtccagatAaaaaagctgagcagtatgaattatagcatgtgaaaagatgttgcgagtatattagaaagtaaaaggcaaataattcgaacgaataataggataatctcacctgaggtagtataatgcagccaatgatgtaaccaatgctttttcgatggcgtattttgtgttgcaatgctgctgctgcatctttgatgtcatgcaaaacaaattccgcccagttgtacttgtgaatattttctacatcaaccaaagccttcatataccttatagatatgtgattgttaacagattgaggagccaagaatttggttacaacgaagattataaaagcagtcttgaatacaatctgttcgtgaacagtcatcgtcctgttaaattttttctccaatatcctctgaattgttacaatggtaagtccatcaaaggaatctttctcaaagatttcacacatataagccttaacatcttttacctcgttttttattgcaggcaaaatctccttccgtccacaagggattcccaaaagtaggctgacatcctcacatgtcaaacaaatttcatgtctagatcccgcaaacagattacctgatgatgggtctagcttgcacagaatccatgctccgaattgcttgttcagtttagtcaacctcatggaaagcaacccatcaaaccccatctgtttcactagctctttttgctgatcaccaaaacctgagaatagatctgagagaatagcaggagtgcacctggtgtaaattttttcttgtactacctttttacccttgatgccacttgtttttttttggaatttgatactgcagaaccaggtagctgcttccgctgatgcatctttcttgcttgagcagcatgaagggctctagtgaaaacagaactagagccaccaccacctgaaacattcgcacctgctgcaggactgcaaaggtgttgcaaatgcaaaaacataaacaaaacaaattagtaagagatacgatcaaaaaaagactcaaagattaggAaaaaaaaatccatcaatggctgccgcgagcttcgacggcgccggcgttggggcgctcggcgtgcacgcggcacattggggcgctcctctccggcagcctgcagcctgacactgctataccgtaccaatgtcgggttggtgctgttcatcgtcgccatggccagcaccacattcactgcaaaataacagatgaatatggcaacaaaccttggaactggagttctccatgctagacctttcaacgttatctgcaacgcagccgccggcgaggctactaatctgagttcagatgggttaagaactctcaaaacgcaaagaacggttttag
More
|
||||||||||
| CDS seq | atggagaactccatgaatgtggtgctggccatggcgacgatgaacagcaccaacccgacattggtacgtcctgcagcaggtgcgaatgtttcaggtggtggtggctctagttctgttttcactagagcccttcatgctgctcaagcaagaaagatgcatcagcggaagcagctacctggttctgcagtatcaaattccaaaaaaaaacaagtggcatcaaggcaaaaagagctagtgaaacagatggggtttgatgggttgctttccatgaggttgactaaactgaacaagcaattcggagcatggattctgtgcaagctagacccatcatcaggtaatctgtttgcgggatctagacatgaaatttgtttgacatgtgaggatgtcagcctacttttgggaatcccttgtggacggaaggagattttgcctgcaataaaaaacgaggtaaaagatgttaaggcttatatgtgtgaaatctttgagaaagattcctttgatggacttaccattgtaacaattcagaggatattggagaaaaaatttaacaggacgatgactgttcacgaacagattgtattcaagactgcttttataatcttcgttgtaaccaaattcttggctcctcaatctgttaacaatcacatatctataaggtatatgaaggctttggttgatgtagaaaatattcacaagtacaactgggcggaatttgttttgcatgacatcaaagatgcagcagcagcattgcaacacaaaatacgccatcgaaaaagcattggttacatcattggctgcattatactacctcagctttttTatctggacaatctggatttcgggacggacactcccgaggaggaaaacattccaaggattggcgtgtacaatgactccatgatagcagaattcattgagagggatctgcgaaacaaacatgatgaaaaatacaatcttggccatcatacgggtgcaatagaggctatccatgtggatcgtacctacgatgccaggtctgacatcgagcccccaagctttaatctaggaataacacaagatatcgaagaagcaaAcatggtggcatgtaccccaggtcatgacatctccaatgtggctgaagactctgacaaagaacaagaactcaactttttagcacgtaccccagatcagccaatctcaaagtcagtagatgcctctgacaaatccggagaaggttaccaacaaactaaacttagtagtttctcTCcgtactctatgttgaaagagacgagtggggcgaggattttcatgcgtgaggagtacgcatgtacaaagctcccacctaaatccaagaggagaattatcggcggtccttctgatatcctattcgatcggccaaagaggtcgattaaaccaagccatttggtgaaatcaccatttctgagcaagcaacactctttcgtcaggcatgaccagaaggcacttgatgatttatacacatatgcaatttcaatcactgatgcagaagctcttaaaagctctaatgtaagccacctacctgaaatgttcctttctttcaccactaattgtaaagatatcacatttaacaggaaaatctgggttcacatctcccaacctgtccctatgtcattaagcctacatgacatacaacaggctattcggctagacactcaaatgcaagaagaaacattcaatgttgcagttcaagtattagcagcggatgagatacagagatttggaggaactgattttgtaggctggagacatttcttaaatcaagattttgcaatgtttgcaacagctggtgatgaccagtggaacccagaggatcatctcccctcattcaaagatgactccctgataccatatgacgtacctagttgccacctgatatttattccactacttcaaccactgcactattctctatacgcatttgatatggagaaaaaaaaattatgcattcttgacccactgagagacacctcgaaaagatcagaggatacagcagaaagacacttaaaaacaaaatttcacatttcatctgctctgaaggagtgcatgaagcttgcatttccagattgggacgaggatataccaaactgggtttctgagttcccttcggccatcccagctataaacaacaggctggaatgtgcctttcacgtgctctactacatgcgaaactgggatggaactcgccttgtgaaccccccaaaatctgatcaacgagatcttcgaaaggaatttctgtccaacttattgtcattcaaaggcaacgaagctattctgccggacttcgtcgttcactgcctgaagttatctaacaagatctga
More
|
||||||||||
| Protein seq | MENSMNVVLAMATMNSTNPTLVRPAAGANVSGGGGSSSVFTRALHAAQARKMHQRKQLPGSAVSNSKKKQVASRQKELVKQMGFDGLLSMRLTKLNKQFGAWILCKLDPSSGNLFAGSRHEICLTCEDVSLLLGIPCGRKEILPAIKNEVKDVKAYMCEIFEKDSFDGLTIVTIQRILEKKFNRTMTVHEQIVFKTAFIIFVVTKFLAPQSVNNHISIRYMKALVDVENIHKYNWAEFVLHDIKDAAAALQHKIRHRKSIGYIIGCIILPQLFYLDNLDFGTDTPEEENIPRIGVYNDSMIAEFIERDLRNKHDEKYNLGHHTGAIEAIHVDRTYDARSDIEPPSFNLGITQDIEEANMVACTPGHDISNVAEDSDKEQELNFLARTPDQPISKSVDASDKSGEGYQQTKLSSFSPYSMLKETSGARIFMREEYACTKLPPKSKRRIIGGPSDILFDRPKRSIKPSHLVKSPFLSKQHSFVRHDQKALDDLYTYAISITDAEALKSSNVSHLPEMFLSFTTNCKDITFNRKIWVHISQPVPMSLSLHDIQQAIRLDTQMQEETFNVAVQVLAADEIQRFGGTDFVGWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQPLHYSLYAFDMEKKKLCILDPLRDTSKRSEDTAERHLKTKFHISSALKECMKLAFPDWDEDIPNWVSEFPSAIPAINNRLECAFHVLYYMRNWDGTRLVNPPKSDQRDLRKEFLSNLLSFKGNEAILPDFVVHCLKLSNKI |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_02g0025430 | OsGoSa_02g0025430.01 | Chr02 | 25943493 | 25947066 | - | NAM | ||
| CDS seq | atggagaactccatgaatgtggtgctggccatggcgacgatgaacagcaccaacccgacattggtacgtcctgcagcaggtgcgaatgtttcaggtggtggtggctctagttctgttttcactagagcccttcatgctgctcaagcaagaaagatgcatcagcggaagcagctacctggttctgcagtatcaaattccaaaaaaaaacaagtggcatcaaggcaaaaagagctagtgaaacagatggggtttgatgggttgctttccatgaggttgactaaactgaacaagcaattcggagcatggattctgtgcaagctagacccatcatcaggtaatctgtttgcgggatctagacatgaaatttgtttgacatgtgaggatgtcagcctacttttgggaatcccttgtggacggaaggagattttgcctgcaataaaaaacgaggtaaaagatgttaaggcttatatgtgtgaaatctttgagaaagattcctttgatggacttaccattgtaacaattcagaggatattggagaaaaaatttaacaggacgatgactgttcacgaacagattgtattcaagactgcttttataatcttcgttgtaaccaaattcttggctcctcaatctgttaacaatcacatatctataaggtatatgaaggctttggttgatgtagaaaatattcacaagtacaactgggcggaatttgttttgcatgacatcaaagatgcagcagcagcattgcaacacaaaatacgccatcgaaaaagcattggttacatcattggctgcattatactacctcagctttttTatctggacaatctggatttcgggacggacactcccgaggaggaaaacattccaaggattggcgtgtacaatgactccatgatagcagaattcattgagagggatctgcgaaacaaacatgatgaaaaatacaatcttggccatcatacgggtgcaatagaggctatccatgtggatcgtacctacgatgccaggtctgacatcgagcccccaagctttaatctaggaataacacaagatatcgaagaagcaaAcatggtggcatgtaccccaggtcatgacatctccaatgtggctgaagactctgacaaagaacaagaactcaactttttagcacgtaccccagatcagccaatctcaaagtcagtagatgcctctgacaaatccggagaaggttaccaacaaactaaacttagtagtttctcTCcgtactctatgttgaaagagacgagtggggcgaggattttcatgcgtgaggagtacgcatgtacaaagctcccacctaaatccaagaggagaattatcggcggtccttctgatatcctattcgatcggccaaagaggtcgattaaaccaagccatttggtgaaatcaccatttctgagcaagcaacactctttcgtcaggcatgaccagaaggcacttgatgatttatacacatatgcaatttcaatcactgatgcagaagctcttaaaagctctaatgtaagccacctacctgaaatgttcctttctttcaccactaattgtaaagatatcacatttaacaggaaaatctgggttcacatctcccaacctgtccctatgtcattaagcctacatgacatacaacaggctattcggctagacactcaaatgcaagaagaaacattcaatgttgcagttcaagtattagcagcggatgagatacagagatttggaggaactgattttgtaggctggagacatttcttaaatcaagattttgcaatgtttgcaacagctggtgatgaccagtggaacccagaggatcatctcccctcattcaaagatgactccctgataccatatgacgtacctagttgccacctgatatttattccactacttcaaccactgcactattctctatacgcatttgatatggagaaaaaaaaattatgcattcttgacccactgagagacacctcgaaaagatcagaggatacagcagaaagacacttaaaaacaaaatttcacatttcatctgctctgaaggagtgcatgaagcttgcatttccagattgggacgaggatataccaaactgggtttctgagttcccttcggccatcccagctataaacaacaggctggaatgtgcctttcacgtgctctactacatgcgaaactgggatggaactcgccttgtgaaccccccaaaatctgatcaacgagatcttcgaaaggaatttctgtccaacttattgtcattcaaaggcaacgaagctattctgccggacttcgtcgttcactgcctgaagttatctaacaagatctga
More
|
|||||||
| Protein seq | MENSMNVVLAMATMNSTNPTLVRPAAGANVSGGGGSSSVFTRALHAAQARKMHQRKQLPGSAVSNSKKKQVASRQKELVKQMGFDGLLSMRLTKLNKQFGAWILCKLDPSSGNLFAGSRHEICLTCEDVSLLLGIPCGRKEILPAIKNEVKDVKAYMCEIFEKDSFDGLTIVTIQRILEKKFNRTMTVHEQIVFKTAFIIFVVTKFLAPQSVNNHISIRYMKALVDVENIHKYNWAEFVLHDIKDAAAALQHKIRHRKSIGYIIGCIILPQLFYLDNLDFGTDTPEEENIPRIGVYNDSMIAEFIERDLRNKHDEKYNLGHHTGAIEAIHVDRTYDARSDIEPPSFNLGITQDIEEANMVACTPGHDISNVAEDSDKEQELNFLARTPDQPISKSVDASDKSGEGYQQTKLSSFSPYSMLKETSGARIFMREEYACTKLPPKSKRRIIGGPSDILFDRPKRSIKPSHLVKSPFLSKQHSFVRHDQKALDDLYTYAISITDAEALKSSNVSHLPEMFLSFTTNCKDITFNRKIWVHISQPVPMSLSLHDIQQAIRLDTQMQEETFNVAVQVLAADEIQRFGGTDFVGWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQPLHYSLYAFDMEKKKLCILDPLRDTSKRSEDTAERHLKTKFHISSALKECMKLAFPDWDEDIPNWVSEFPSAIPAINNRLECAFHVLYYMRNWDGTRLVNPPKSDQRDLRKEFLSNLLSFKGNEAILPDFVVHCLKLSNKI
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_02g0025430 | OsGoSa_02g0025430.02 | Chr02 | 25943318 | 25944849 | - | IsoSeq | ||
| CDS seq | atgaccagaaggcacttgatgatttatacacatatgcaatttcaatcactgatgcagaagctcttaagaaaatctgggttcacatctcccaacctgtccctatgt |
|||||||
| Protein seq | MTRRHLMIYTHMQFQSLMQKLLRKSGFTSPNLSLC |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr02 | 25944578 | 25944718 | - | OsGoSa_02g0025430.01 | OsGoSa_02g0025430.02,OsGoSa_02g0025430.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.453954 | 2.551353 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0517900 | SBH | 1.345377 | 0.845570 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g31860 | SBH | 0.764204 | 0.279114 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0517900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0018980 | SBH | 0.361815 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0026390 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0019060 | SBH | 0.679885 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0018810 | SBH | 0.056133 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0018790 | SBH | 0.398189 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0312300 | SBH | 0.7616705 | 0.4634385 | 0.0556815 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0025080 | RBH | 0.0 | 0.0 | 0.049902 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0019030 | SBH | 0.031512 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0018750 | SBH | 0.412376 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0020320 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0025330 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0018680 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G025500 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0018800 | SBH | 2.168619 | 0.0 | 0.0 |
