Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0019030 | OGI:02054590 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:20175146-20178742 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aatttgtaaaaagaatagctgggtgcatatagccttgaatacagttataccagacataaattattctgaactaagaaattttcgaaagaaaaatgctgcaactattctggcttgcttgcataacatgctcatatcttcttagataactttaggccgtgagtgacgaagtccggcagaatagcctcgtttttcttgaatgacagcaagttggacagaaactcctttcgaagatttccttgatcctgttgttatgataaacaattatttattgaaaaggaagatatgttgaccctagtaggggcagaaaactcacagttaatgaggggttgacaagacgagttccatcccagtttctcatgtagtatagcacatgaaaggcacaatccagcctagcataatgtaagtatagtaatgcccaaatttgagtagaatgaaaatattaatttagatcaaatcgggattatcaactcgaacctgttatttaaagctggtatggtcgaagggaactcagaaacccagtttggtatatcctcgtcccaatccggaaatgcaagattcatgcactccttcagagcatttgaaatgtgaatctttgttttggagtgtctttctgcagtatcctccgatcttttcgaggcgtctctcagtgggtcgaggatgcataattttttttctccatatcaaatgtgtaaagagaatagtgcagaggttgaaggagtggaataaatatctacagaataatgttgagaatgcaaaagttagtggcctgcacatttgcacttgacgtaattaatttttcaagacgctgaaaaatgacataccaggtggcaacttggtaggtcatatggtatcagggagtcatctttgaatgatggtagatgatcctctgggttccataggtcatcactagcagttgcaaacatctacagggccatattaaaatatttagacctttaaaatatgaattaaaatagttgagtgtaactacaagcacttactgcaaaatcctggtttaagaaatgtctccagcctacgaaatatgtccctccaaatctgtgtatctcatatgatgccaaaacttgaactgcaacattgaatgtttcttcttgcatttgagtgtctagccgaatagcctgctgtatgtcatgtaggcttaatgacatagggacaggttgagagatgtgaacccaaattttcctggtaaatgtgatatatgtattataaatgatggttgtaccaaagaatgaaacatttcggataggtggcttacttaacagcttcttcatcagtgattgaagttacataggtgtataaatcatcaagtgccttcaagtcatgtctgacgaaagagtgttgcttgctcagaaatggtgatttcaccgaacggcttggtttaatagacctctttggccgatcgaataggatatcagaaggacctccgataattctcctcttggatttaggtgggaactttgtacatgcgtactcctcacgcatgtaaatcctcgcaccactcgtctctttcagcaaagagtgcggagagaaactactaagttttgtttggcggtaacctgttatgattcagaacagtcaaactaagtagtatcatgtggttggttatgaatgaaaataaaaattagaaacaggccggtggggataattaccgctctgagaaaagggagttttctgcaccgcattatcctctccagcttcgtcagaggcttgtactaacttcgagattgcctgatctggggtatgtgctttgagttcttgtgctttctcagagtcttcaaccaccttggagatgtcatgtcctggggtacatgccaccatgtttgcatcttcgatatcttgtgtaatacctagatcaaagcttgggggctcgatgtccgttcaggtgtcgaagcttcgattcacatgggcagcctatgcacatgtatattaacaattattatcgcaaatggattttttaatatggaatagattaacaaacttcatgagattgcacctctgttgcacccgtaggatggccaagattgcatttttcaacatgtcggttacgcagctgaaacaaaaaaaaatccaaaagtctgaactttctgcattcgggaattgtcaatatgaatatactacttgtaggagacttgattttaccttcatctttccatacgcagggaaaggtttccggttcttgagaattacatccctgtcaatgaattctgctatcatggagtcattgtacacgccaattcttggaatgtttttatgcccgggagtgtccgtcccaaaatccagattgtgcagataaaaaagctgagcagtataaattatagcatgtgaaaagatgatgcgagtatagcagaaagtaaaaggcaaagaattccaacgaatactaggataatctcacctcaggtagtataatgcagccattgatgtaaccaatgctttttcgatggcgtattttgtcttgcagtgctgctgctgcatctttaatctcatgcaaaacaaattctgcccagttgtacttgtgaatattttctacatcaaccaaagccttcatataccttatagatatgtgattgttaacagattgaggagccaagaatttggttacaacgaagattataaaagcagtcttgaatacaatctgttcgtaaacagtcattgtcctggtaaattttttctccaaaatcctctgaatcgttgcaattgttattccatcaaatgaatctttctcaaagatttcacacatataagccttaacatcttttacctcgtttttaattgcaggtaaaatctgcttccgtccacaagggattcccaaaagtaagctgacatcctcacaggtcaaacaaatttcatgtttagatccagcaaacagattacctgatgatgggtctagcttgcacagaatccatgctccaaattgcttgttcagtttagtcagtctcatggaaagcaacccgtcaaaccccatttgcctcactagctctttctgctggtcaccaatatctgagaacagatctgagagaatagcaggagtgcacctggtgtaaattttttcttgtactacctttttacccttgatgccacttgtttttttggaatttgagactgcaataccagctagctgcttccgctgatacatctttcttgctcgagcagcatggagagctctagtgagaacagaactagagccactaccacctgaaacattcgcacctgctgcaggactgcaaaggtgctgcaaatgcaaaccattaacaaaatgaattagtaacagatgggatcaagaaaagactcaatagtaggaaaaaaatccatccatggccgccacgagcttcgacggcgctgtcgtcggggcgctcggcacgcacactgtgtcgcgcaagattggggcgctcagcgtgttgttcatcgtcgccatggcctccactgtactcaccggaaaaaaacagatgaatacgccaacaaaccttgaaacgggagttctccatgctagagctttcagcacagccgccggcgaggctaccaatctgagtttagttgtgttaagaactaacaaaacgcagagaacgatattagatcgataatgtt
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| CDS seq | atggagaactcccgtttcaaggccatggcgacgatgaacaacacgctgagcgccccaatcttgcgcgacacagtgtgcgtgccgagcgccccgacgacagcgccgtcgaagctccacctttgcagtcctgcagcaggtgcgaatgtttcaggtggtagtggctctagttctgttctcactagagctctccatgctgctcgagcaagaaagatgtatcagcggaagcagctagctggtattgcagtctcaaattccaaaaaaacaagtggcatcaagggtaaaaaggtagtacaagaaaaaatttacaccaggtgcactcctgctattctctcagatctgttctcagatattggtgaccagcagaaagagctagtgaggcaaatggggtttgacgggttgctttccatgagactgactaaactgaacaagcaatttggagcatggattctgtgcaagctagacccatcatcaggtaatctgtttgctggatctaaacatgaaatttgtttgacctgtgaggatgtcagcttacttttgggaatcccttgtggacggaagcagattttacctgcaattaaaaacgaggtaaaagatgttaaggcttatatgtgtgaaatctttgagaaagattcatttgatggaataacaattgcaacgattcagaggattttggagaaaaaatttaccaggacaatgactgtttacgaacagattgtattcaagactgcttttataatcttcgttgtaaccaaattcttggctcctcaatctgttaacaatcacatatctataaggtatatgaaggctttggttgatgtagaaaatattcacaagtacaactgggcagaatttgttttgcatgagattaaagatgcagcagcagcactgcaagacaaaatacgccatcgaaaaagcattggttacatcaatggctgcattatactacctgagcttttttatctgcacaatctggattttgggacggacactcccgggcataaaaacattccaagaattggcgtgtacaatgactccatgatagcagaattcattgacagggatgtaattctcaagaaccggaaacctttccctgcgtatggaaagatgaagctgcgtaaccgacatgttgaaaaatgcaatcttggccatcctacgggtgcaacagaggctgcccatgtgaatcgaagcttcgacacctga
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| Protein seq | MENSRFKAMATMNNTLSAPILRDTVCVPSAPTTAPSKLHLCSPAAGANVSGGSGSSSVLTRALHAARARKMYQRKQLAGIAVSNSKKTSGIKGKKVVQEKIYTRCTPAILSDLFSDIGDQQKELVRQMGFDGLLSMRLTKLNKQFGAWILCKLDPSSGNLFAGSKHEICLTCEDVSLLLGIPCGRKQILPAIKNEVKDVKAYMCEIFEKDSFDGITIATIQRILEKKFTRTMTVYEQIVFKTAFIIFVVTKFLAPQSVNNHISIRYMKALVDVENIHKYNWAEFVLHEIKDAAAALQDKIRHRKSIGYINGCIILPELFYLHNLDFGTDTPGHKNIPRIGVYNDSMIAEFIDRDVILKNRKPFPAYGKMKLRNRHVEKCNLGHPTGATEAAHVNRSFDT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0019030 | OsLima_02g0019030.02 | Chr02 | 20175146 | 20178742 | - | NAM | ||
| CDS seq | atggagaactcccgtttcaaggccatggcgacgatgaacaacacgctgagcgccccaatcttgcgcgacacagtgtgcgtgccgagcgccccgacgacagcgccgtcgaagctccacctttgcagtcctgcagcaggtgcgaatgtttcaggtggtagtggctctagttctgttctcactagagctctccatgctgctcgagcaagaaagatgtatcagcggaagcagctagctggtattgcagtctcaaattccaaaaaaacaagtggcatcaagggtaaaaaggtagtacaagaaaaaatttacaccaggtgcactcctgctattctctcagatctgttctcagatattggtgaccagcagaaagagctagtgaggcaaatggggtttgacgggttgctttccatgagactgactaaactgaacaagcaatttggagcatggattctgtgcaagctagacccatcatcaggtaatctgtttgctggatctaaacatgaaatttgtttgacctgtgaggatgtcagcttacttttgggaatcccttgtggacggaagcagattttacctgcaattaaaaacgaggtaaaagatgttaaggcttatatgtgtgaaatctttgagaaagattcatttgatggaataacaattgcaacgattcagaggattttggagaaaaaatttaccaggacaatgactgtttacgaacagattgtattcaagactgcttttataatcttcgttgtaaccaaattcttggctcctcaatctgttaacaatcacatatctataaggtatatgaaggctttggttgatgtagaaaatattcacaagtacaactgggcagaatttgttttgcatgagattaaagatgcagcagcagcactgcaagacaaaatacgccatcgaaaaagcattggttacatcaatggctgcattatactacctgagcttttttatctgcacaatctggattttgggacggacactcccgggcataaaaacattccaagaattggcgtgtacaatgactccatgatagcagaattcattgacagggatgtaattctcaagaaccggaaacctttccctgcgtatggaaagatgaagctgcgtaaccgacatgttgaaaaatgcaatcttggccatcctacgggtgcaacagaggctgcccatgtgaatcgaagcttcgacacctga
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| Protein seq | MENSRFKAMATMNNTLSAPILRDTVCVPSAPTTAPSKLHLCSPAAGANVSGGSGSSSVLTRALHAARARKMYQRKQLAGIAVSNSKKTSGIKGKKVVQEKIYTRCTPAILSDLFSDIGDQQKELVRQMGFDGLLSMRLTKLNKQFGAWILCKLDPSSGNLFAGSKHEICLTCEDVSLLLGIPCGRKQILPAIKNEVKDVKAYMCEIFEKDSFDGITIATIQRILEKKFTRTMTVYEQIVFKTAFIIFVVTKFLAPQSVNNHISIRYMKALVDVENIHKYNWAEFVLHEIKDAAAALQDKIRHRKSIGYINGCIILPELFYLHNLDFGTDTPGHKNIPRIGVYNDSMIAEFIDRDVILKNRKPFPAYGKMKLRNRHVEKCNLGHPTGATEAAHVNRSFDT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0019030 | OsLima_02g0019030.04 | Chr02 | 20175146 | 20178598 | - | NAM | ||
| CDS seq | atggtggcatgtaccccaggacatgacatctccaaggtggttgaagactctgagaaagcacaagaactcaaagcacataccccagatcaggcaatctcgaagttagtacaagcctctgacgaagctggagaggataatgcggtgcagaaaactcccttttctcagagcggttaccgccaaacaaaacttagtagtttctctccgcactctttgctgaaagagacgagtggtgcgaggatttacatgcgtgaggagtacgcatgtacaaagttcccacctaaatccaagaggagaattatcggaggtccttctgatatcctattcgatcggccaaagaggtctattaaaccaagccgttcggtgaaatcaccatttctgagcaagcaacactctttcgtcagacatgacttgaaggcacttgatgatttatacacctatgtaacttcaatcactgatgaagaagctgttaagaaaatttgggttcacatctctcaacctgtccctatgtcattaagcctacatgacatacagcaggctattcggctagacactcaaatgcaagaagaaacattcaatgttgcagttcaagttttggcatcatatgagatacacagatttggagggacatatttcgtaggctggagacatttcttaaaccaggattttgcaatgtttgcaactgctagtgatgacctatggaacccagaggatcatctaccatcattcaaagatgactccctgataccatatgacctaccaaaaaaaaaattatgcatcctcgacccactgagagacgcctcgaaaagatcggaggatactgcagaaagacactccaaaacaaagattcacatttcaaatgctctgaaggagtgcatgaatcttgcatttccggattgggacgaggatataccaaactgggatcaaggaaatcttcgaaaggagtttctgtccaacttgctgtcattcaagaaaaacgaggctattctgccggacttcgtcactcacggcctaaagttatctaagaagatatga
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| Protein seq | MVACTPGHDISKVVEDSEKAQELKAHTPDQAISKLVQASDEAGEDNAVQKTPFSQSGYRQTKLSSFSPHSLLKETSGARIYMREEYACTKFPPKSKRRIIGGPSDILFDRPKRSIKPSRSVKSPFLSKQHSFVRHDLKALDDLYTYVTSITDEEAVKKIWVHISQPVPMSLSLHDIQQAIRLDTQMQEETFNVAVQVLASYEIHRFGGTYFVGWRHFLNQDFAMFATASDDLWNPEDHLPSFKDDSLIPYDLPKKKLCILDPLRDASKRSEDTAERHSKTKIHISNALKECMNLAFPDWDEDIPNWDQGNLRKEFLSNLLSFKKNEAILPDFVTHGLKLSKKI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0019030 | OsLima_02g0019030.01 | Chr02 | 20175146 | 20178742 | - | NAM | ||
| CDS seq | atggagaactcccgtttcaaggccatggcgacgatgaacaacacgctgagcgccccaatcttgcgcgacacagtgtgcgtgccgagcgccccgacgacagcgccgtcgaagctccacctttgcagtcctgcagcaggtgcgaatgtttcaggtggtagtggctctagttctgttctcactagagctctccatgctgctcgagcaagaaagatgtatcagcggaagcagctagctgatctgttctcagatattggtgaccagcagaaagagctagtgaggcaaatggggtttgacgggttgctttccatgagactgactaaactgaacaagcaatttggagcatggattctgtgcaagctagacccatcatcaggtaatctgtttgctggatctaaacatgaaatttgtttgacctgtgaggatgtcagcttacttttgggaatcccttgtggacggaagcagattttacctgcaattaaaaacgaggtaaaagatgttaaggcttatatgtgtgaaatctttgagaaagattcatttgatggaataacaattgcaacgattcagaggattttggagaaaaaatttaccaggacaatgactgtttacgaacagattgtattcaagactgcttttataatcttcgttgtaaccaaattcttggctcctcaatctgttaacaatcacatatctataaggtatatgaaggctttggttgatgtagaaaatattcacaagtacaactgggcagaatttgttttgcatgagattaaagatgcagcagcagcactgcaagacaaaatacgccatcgaaaaagcattggttacatcaatggctgcattatactacctgagcttttttatctgcacaatctggattttgggacggacactcccgggcataaaaacattccaagaattggcgtgtacaatgactccatgatagcagaattcattgacagggatgtaattctcaagaaccggaaacctttccctgcgtatggaaagatgaagctgcgtaaccgacatgttgaaaaatgcaatcttggccatcctacgggtgcaacagaggctgcccatgtgaatcgaagcttcgacacctga
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| Protein seq | MENSRFKAMATMNNTLSAPILRDTVCVPSAPTTAPSKLHLCSPAAGANVSGGSGSSSVLTRALHAARARKMYQRKQLADLFSDIGDQQKELVRQMGFDGLLSMRLTKLNKQFGAWILCKLDPSSGNLFAGSKHEICLTCEDVSLLLGIPCGRKQILPAIKNEVKDVKAYMCEIFEKDSFDGITIATIQRILEKKFTRTMTVYEQIVFKTAFIIFVVTKFLAPQSVNNHISIRYMKALVDVENIHKYNWAEFVLHEIKDAAAALQDKIRHRKSIGYINGCIILPELFYLHNLDFGTDTPGHKNIPRIGVYNDSMIAEFIDRDVILKNRKPFPAYGKMKLRNRHVEKCNLGHPTGATEAAHVNRSFDT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0019030 | OsLima_02g0019030.03 | Chr02 | 20175146 | 20178598 | - | NAM | ||
| CDS seq | atggtggcatgtaccccaggacatgacatctccaaggtggttgaagactctgagaaagcacaagaactcaaagcacataccccagatcaggcaatctcgaagttagtacaagcctctgacgaagctggagaggataatgcggtgcagaaaactcccttttctcagagcggttaccgccaaacaaaacttagtagtttctctccgcactctttgctgaaagagacgagtggtgcgaggatttacatgcgtgaggagtacgcatgtacaaagttcccacctaaatccaagaggagaattatcggaggtccttctgatatcctattcgatcggccaaagaggtctattaaaccaagccgttcggtgaaatcaccatttctgagcaagcaacactctttcgtcagacatgacttgaaggcacttgatgatttatacacctatgtaacttcaatcactgatgaagaagctgttaagaaaatttgggttcacatctctcaacctgtccctatgtcattaagcctacatgacatacagcaggctattcggctagacactcaaatgcaagaagaaacattcaatgttgcagttcaagttttggcatcatatgagatacacagatttggagggacatatttcgtaggctggagacatttcttaaaccaggattttgcaatgtttgcaactgctagtgatgacctatggaacccagaggatcatctaccatcattcaaagatgactccctgataccatatgacctaccaagttgccacctggatcaaggaaatcttcgaaaggagtttctgtccaacttgctgtcattcaagaaaaacgaggctattctgccggacttcgtcactcacggcctaaagttatctaagaagatatga
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| Protein seq | MVACTPGHDISKVVEDSEKAQELKAHTPDQAISKLVQASDEAGEDNAVQKTPFSQSGYRQTKLSSFSPHSLLKETSGARIYMREEYACTKFPPKSKRRIIGGPSDILFDRPKRSIKPSRSVKSPFLSKQHSFVRHDLKALDDLYTYVTSITDEEAVKKIWVHISQPVPMSLSLHDIQQAIRLDTQMQEETFNVAVQVLASYEIHRFGGTYFVGWRHFLNQDFAMFATASDDLWNPEDHLPSFKDDSLIPYDLPSCHLDQGNLRKEFLSNLLSFKKNEAILPDFVTHGLKLSKKI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr02 | 20177553 | 20178389 | - | OsLima_02g0019030.02 | OsLima_02g0019030.01,OsLima_02g0019030.02 | All |
| SE | Chr02 | 20175387 | 20175967 | - | OsLima_02g0019030.01,OsLima_02g0019030.02 | OsLima_02g0019030.01,OsLima_02g0019030.02,OsLima_02g0019030.03 | All |
| A5 | Chr02 | 20175387 | 20175661 | - | OsLima_02g0019030.01,OsLima_02g0019030.02 | OsLima_02g0019030.01,OsLima_02g0019030.02,OsLima_02g0019030.04 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.031512 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0517900 | RBH | 1.345377 | 0.845570 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g31860 | RBH | 0.764204 | 0.279114 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0517900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0018980 | RBH | 0.361815 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0019100 | RBH | 0.194164 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0019060 | RBH | 0.679885 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0018810 | RBH | 0.056133 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0018790 | RBH | 0.398189 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0312300 | RBH | 0.7616705 | 0.4634385 | 0.0556815 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0018500 | RBH | 0.000000 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0331200 | RBH | 0.2204525 | 0.062258 | 0.2171405 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0018750 | RBH | 0.412376 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0019170 | RBH | 0.691711 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0018900 | RBH | 0.264230 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0018680 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G019100 | RBH | 0.493623 | 0.0 | 0.568950 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0018800 | RBH | 2.168619 | 0.0 | 0.0 |
