Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
LOC_Os06g41670 OGI:06070600 | 16/16 Nipponbare | IRGSP 1.0 | MSU Chr06:24954262-24959578
Gene Symbol -
DNA seq

CTCAACTTAATGTGATATGCTCAAATCTCAAAATGTCATTTCAATCTCCGGTATTTATCTCAAAAGCCAGCATACATATTGTGTGATACATATCTGATTATTCCAAAGAAAAGGGAAAAAATAACTCCACAAGAAAGATACTCCTGGTGAGCAGATGGCAACATTGCATCTTGTAGAAAAAGTATAAAACGCAAGCAATGAATGGTGAATGTTCTGTAATGCATAAATAATAGGTTTAGATGTGAAAATGCACAAGCCTCATAATAAGTTGGCTTGATTAAAATAGAACCCACAGGTGGAATTTTTTTTTTTTTGGCCAGGTCAGCACAGCCACACAGGTAGATGTGATGAAGCTGTAGGTGATCACCGGCAGGCCTACAGCTTCGGAGGACAGCCCAGATAGTTTACTGAAGAAAACTGGAAGAACTTGCTGAAGAATCAGTTGGATGCAGTAGACTGGATTGAATTGACCGCTGGATTATATCATTCTCGCGAAGTATTTCCTCAGCTATATCTGCAATAGGTTGGCACTAACACAAATCAGTGGATTGTGGTAATATTTTTGCAACAAATAATTGCTAGACCTATCCTTTTCAAAATTCAAGCTGCTGTGAATTACCTTGACCATATCCTATCGATTCACCAGCAAACAAACATGACGGCAACATGGCATACTTCTCCCACTCAACACCATGTTGCCATTCAAACTGCTCCTCTAGCAATGGATGGCATCCATTCAAATACAAAAATTTAAGGGTCAGAGGAAGACCATCTTCCGGTAAAGAAACAATTTCAGGGCATTTGTGTATGATCATGACTCTGAGGGAGAAGAAGTCAAACATCTCAGGCAAAGCCACTAACTTCAGGCAATTTCTGATCTCCAGTTTGGAAAGGAAAGAAAGGTTTCTCAAGCTCCTCAGTGATACCAGTTTGTTGCAGTGCTCTATAAGAACCTCTGTCAAGGTTGTTAGGTGTCCATCCTCTTGTAGTTCATTCAATTCGGGGCAATCTTGTATGATCAAGTTCTTGAGGACAGGAAAATATCTGAAGTCCAACAACGATGTTATGTTGGGGCAACCAACAATTTTCATTTCTGTTAAACTCGCAAACGCACGGTGTAAATCAGCATACCAGCAGATAAATGGTCCTTGGTGGGATGGAAGATTGGGGCCTAGATCTCTAAGCCCATCATTCACCATGTCTGCTCCGTCAAAGCTAATTTCTGCAATTTCCACAGATTCCTGGTGACATACGTGAAAAATACCCGAAAGGCTAGTTAAGCTAACCTCCTTTTGAGTAATACATGTGTCCAGGCGATGATCAGTATGCTGTGTGTAAACGATGGTGGATGGGAGCACTTCCATTTTTACAGGTGGAGGAAAGACTGGTGGCAGTTCTTTCAGCTTTGGACACCTACTGATGAGTACATCGTGAAGAACAGGAAAAGCATAATCGATTGAAGACCAATCTGCCAATTCTGGCAATTCTGTCAATTCTAGTGTTTTCAGGGAGGGAAAGCCAGCATCTCCATAGAAAGATGTGCCGATGCACTCTAATGATTTCATTCCATCAATATGAAGTTCCCTGAGAGATGGTAACTGACCTAAAGGTGGAAGCAACTTCCAACATGTGCAATCATGAATGCTGATGTGTTGCAATCTAGATAGCCACTTGGACTCCAGCCAACATGGAGATGTACAGCCTGAGTATCCTTCAACATTCAATTCCTCAAGGCAAGGATGAGGTGTTAAAGCATTGAGCACATCATATTCTTTGTCAGATTGGCTATCTGCATTAGAAAAACTCCATTGTAGGTCCAACCTAGATATTTGACTCTTGTTGACTAACTGAGCATCAATTGCTTCATCCTTGTTTTTCACATTCTCGAGAGATGTAAATATAAGAAACCCTCGGAGTTCATTCATGTCATGCAGGAGAAATGCCCAGGGGTCTTCCGGCTAGCTCCACAAGGTGGTGGGCTAGACGACCTGGGTTCAAAGCCTCACCCCTCCTAATTATTTGATATTAGGTCCTTCCCTAATATTCTAGTTTTTTTTTTCATTCATGTCATGCAGCACCTCTAGCCCCTGCGCTTTCCTCTTCTCAACACAGAATTCCCCTGCAGCCCGGAGGTATGGCATATGCCCCACAGAAGCCAAATCAACAGTAAGATCCCTATGAACATCAATAGTCAAAATATTGCTCAGGTTATCCAGGTTTTTGGGGAAGATGACATGTTTTGCACATATAAAACATGAATGCCGGTGTAGAAACAACATTTGTAAATGGTAAAGACTGCAGAGTGAATCAGGTAGAGGACGGTTAGTATTTGGGAGAATTAAGCACCTAAGGTGTATCATGTGATTTAAGTCCGGCAAATATCTTAAGCAGCAACCAGTCAAATCCAATAATCTCAAGCTCTTGAACTCTTTGAAAAAATCTACTCCCACACAAACTCGTTAGCAATAACATCTTTCTTTATTCCAAATTATTAGGGTGCGCAGCCTTTGCAACTTACAGGCACGAAGAAGGTCAACTCTTTCAGCCAGTATAGACAGATGTTGAACTTCTGGAAAAATCTCTTGAGGTTCATTGGCTTCTACTCTGTAACACTTACCATTGGACACGTGGACAGCAAGATCATTCATGAGGTCATGCATAACATAATGCACTGTACCTCCATATCGAAGTGCCTGGAAAAATGATCTTGATAACAACTCATCAAAATAACTTTTCCCAGTGCTTGTCAAGCTTCCATAGGTGCGTCCACGATCCTGAATAAATTCATGAGCTATCCACATGTTAACCAACATGTCAGGCTCGAAATAATAACCTTTTGGGAACAAACCACAGAACGAAAAGCATTGCTGAAGGTGCTCTGGCAAGCATTCATAGCTTAGGCGTAAAATTGTCATAATATCTTTCTCATTCGATAGACCACTTTTTAGAACTCGATTCCATTCTTCATAGTTGAAGTTTGAACTAAGATGCCCACCAACAGCCTTTATAGCTAATGCCGATCCATTCAATTTTTGCACAATGTGTTCACCTATAGACTTCAATTCGAGATGTTCATTTGGATCTCTAGTGCTAAATGCACATCTTCTGAAAAGTTCCCAGCTATCTTTACTCTCTAGACCACTCAAACAGAATGGAGTGGCACATCCTAATGTATTTGCAACAATACCCATTCGAGTTGTAACTAAAATCTTGATTACTTTCGCCCCATGCCATAAAGGAGCAAACAATTCTCTCCATCTATCAGCATTTATGGGTACCCCAACCTTTTCATCATACCAAACATCATCCAATACAAGTAGAAACTTCTTCATGGTTATTTTGTTCTTGAGTTCTTCTTGCAGCATGCTAAAATTAAAATTCGTTAGGTCAATGCTTTTATCAATAGTTGTTAGGATTTCTTTGGTGATTCTGACCTTATCAAAGACATGTGATACACATACCCATGCCCTCATATCAAAATTATCCTCGATTCTTTTATCATTGTAAATAAGTTGAGCTAAAGTAGTTTTTCCAATTCCGCCATTGCCGACTATAGTAATTACCTCTAATGATGTTGACCTTGCTCCTTTGCTTCTAGATTCAGGTTTGTCAGATTGTTCCAGCAATTGGTGCACTAGTTCTTCCCGTTCCTTCTGACGACCAACTACAAACTCACCAATTGAAATCGAGCTGGAGATACGCCATTGAAGGGGCTCAGGTAACATGTGTGAACTAAAGTTTTCTACTCCCATCACCCTGACGAGCATATGGGCACATTCCTTTACTGTACTCAAGCTTTTGAGCATCTTTCCCAATTTGGACCGAAACTTGTCATGGCCAACCAAACGCTTGGCAATAGAGATAGAACTGGAGCCTAAGCTTCTTAGCTTTCTCTTTTGAGCATTCGCTTTCAGAAACATGTAATCAAATTCATCCATGATGTCCTCGGCATCGTAGACAGCATCTTTCAGCTGGCGGAGTAAAGCTTGCTGATTGCAATCAAGTGTTCTCCGCCTTTCTGCAGTGCCTACTACCAAGAGAATTTCAGTTAAAATAGTCTCCAGCTTTTTAAGGTCATCCACCAAATTGGACTGCCACTTGTACTGAGTTGATATATATGATTGGACCTTCTCAAACATAAGCTTGATGACAGGAGATACTACCCATCCAACTCCAGTGGCTAGTGGTAAAGTGGCCATGTTGCTCAATATACTGTCTCTTGGCTCTTCAGTTTCTCCTTACAGCTTTCAACTGATGTACCTAGCATTGATAAGATAATTAATTAAATATAAGAACATAAAGAAAACATGTCGAAGTGAGGCATACTGGTGTCCATTAGTCAGTACATTTAATAGAACAATTCAGAAATAAAATCCGCATTATTCAAATGCATGTAAGATTACTATCAGAGATGGAACTATATAAAATTTCCCATTATTCCTTGATTCCATTAATTAGTTAAACCAGTAGACCCCTAGACACCAAAAAAATTAGTACTAATGTTGCAGCTATCTCGGACTCTCTGTGTCTCAGCTGCAGTTGTCTTTTGTTAAGTAGACTTCAGTTCCTAAAATTTCCTAGGAGGGAAATTATGAAATATTTAATTTTGTTAAAATACTTTTAAGAATAATCTATATCATGTTCTAGCTTCTTCAAACTAAATATTTTAAAAGTTATAGATAGCCCTCAATTTTGTCCAAACGTCAAGAATTATGGAACTCCATATGCTAAATACTCCCTATGTCCCATATAAGCGATTTTGGAGGGATGTGACACATCCTAGTTCTAGTTCTAGAATCTGGATAGAGAGGCTGTCCGGATTCGTGGTAATACTATGTTCTAGATTTGTAATACTATGATGCGTCACATCCCTCCAAAAATCCATTATATTTTAGAATGGAGGGAGTACGTGGTTTTGCAATACAGCGGCATAAATCTATAGTTTTGACAAAAATATCTATGGTTTTGCAAAATTAACTCCATATGTATTTCAGCAAAAGGGAAACATAGATAACTCATATGCCTGGGAAGCAAAGAGGAGCTACATACGGATCAAGATCCACCAAGTAAATTCAATATAATCGTTTTACTATGGTGAGAAATCCTTAAAAATTTGACAGCCTACAAATGCTGAACTCATGCTATCAAGTGAAAGAAACCAAGAATAATACCTTATCAATATATAAAATCCCTTTTTCCTCTCAGAACAAAAACAAAAAAAACCATGGAGAAGCTGGAGCAAACAAAAAGAAAACCATGGAGAAGCTGAAGGCTGAAGCAGGCCAAAGAGCAGCAGCCAGCAGGAGAAAGGCAGAGC

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CDS seq

ATGGCCACTTTACCACTAGCCACTGGAGTTGGATGGGTAGTATCTCCTGTCATCAAGCTTATGTTTGAGAAGGTCCAATCATATATATCAACTCAGTACAAGTGGCAGTCCAATTTGGTGGATGACCTTAAAAAGCTGGAGACTATTTTAACTGAAATTCTCTTGGTAGTAGGCACTGCAGAAAGGCGGAGAACACTTGATTGCAATCAGCAAGCTTTACTCCGCCAGCTGAAAGATGCTGTCTACGATGCCGAGGACATCATGGATGAATTTGATTACATGTTTCTGAAAGCGAATGCTCAAAAGAGAAAGCTAAGAAGCTTAGGCTCCAGTTCTATCTCTATTGCCAAGCGTTTGGTTGGCCATGACAAGTTTCGGTCCAAATTGGGAAAGATGCTCAAAAGCTTGAGTACAGTAAAGGAATGTGCCCATATGCTCGTCAGGGTGATGGGAGTAGAAAACTTTAGTTCACACATGTTACCTGAGCCCCTTCAATGGCGTATCTCCAGCTCGATTTCAATTGGTGAGTTTGTAGTTGGTCGTCAGAAGGAACGGGAAGAACTAGTGCACCAATTGCTGGAACAATCTGACAAACCTGAATCTAGAAGCAAAGGAGCAAGGTCAACATCATTAGAGGTAATTACTATAGTCGGCAATGGCGGAATTGGAAAAACTACTTTAGCTCAACTTATTTACAATGATAAAAGAATCGAGGATAATTTTGATATGAGGGCATGGGTATGTGTATCACATGTCTTTGATAAGGTCAGAATCACCAAAGAAATCCTAACAACTATTGATAAAAGCATTGACCTAACGAATTTTAATTTTAGCATGCTGCAAGAAGAACTCAAGAACAAAATAACCATGAAGAAGTTTCTACTTGTATTGGATGATGTTTGGTATGATGAAAAGGTTGGGGTACCCATAAATGCTGATAGATGGAGAGAATTGTTTGCTCCTTTATGGCATGGGGCGAAAGTAATCAAGATTTTAGTTACAACTCGAATGGGTATTGTTGCAAATACATTAGGATGTGCCACTCCATTCTGTTTGAGTGGTCTAGAGAGTAAAGATAGCTGGGAACTTTTCAGAAGATGTGCATTTAGCACTAGAGATCCAAATGAACATCTCGAATTGAAGTCTATAGGTGAACACATTGTGCAAAAATTGAATGGATCGGCATTAGCTATAAAGGCTGTTGGTGGGCATCTTAGTTCAAACTTCAACTATGAAGAATGGAATCGAGTTCTAAAAAGTGGTCTATCGAATGAGAAAGATATTATGACAATTTTACGCCTAAGCTATGAATGCTTGCCAGAGCACCTTCAGCAATGCTTTTCGTTCTGTGGTTTGTTCCCAAAAGGTTATTATTTCGAGCCTGACATGTTGGTTAACATGTGGATAGCTCATGAATTTATTCAGGATCGTGGACGCACCTATGGAAGCTTGACAAGCACTGGGAAAAGTTATTTTGATGAGTTGTTATCAAGATCATTTTTCCAGGCACTTCGATATGGAGGTACAGTGCATTATGTTATGCATGACCTCATGAATGATCTTGCTGTCCACGTGTCCAATGGTAAGTGTTACAGAGTAGAAGCCAATGAACCTCAAGAGATTTTTCCAGAAGTTCAACATCTGTCTATACTGGCTGAAAGAGTTGACCTTCTTCGTGCCTGTAAGTTGCAAAGGCTGCGCACCCTAATAATTTGGAATAAAGAAAGATGTTATTGCTAA

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Protein seq

MATLPLATGVGWVVSPVIKLMFEKVQSYISTQYKWQSNLVDDLKKLETILTEILLVVGTAERRRTLDCNQQALLRQLKDAVYDAEDIMDEFDYMFLKANAQKRKLRSLGSSSISIAKRLVGHDKFRSKLGKMLKSLSTVKECAHMLVRVMGVENFSSHMLPEPLQWRISSSISIGEFVVGRQKEREELVHQLLEQSDKPESRSKGARSTSLEVITIVGNGGIGKTTLAQLIYNDKRIEDNFDMRAWVCVSHVFDKVRITKEILTTIDKSIDLTNFNFSMLQEELKNKITMKKFLLVLDDVWYDEKVGVPINADRWRELFAPLWHGAKVIKILVTTRMGIVANTLGCATPFCLSGLESKDSWELFRRCAFSTRDPNEHLELKSIGEHIVQKLNGSALAIKAVGGHLSSNFNYEEWNRVLKSGLSNEKDIMTILRLSYECLPEHLQQCFSFCGLFPKGYYFEPDMLVNMWIAHEFIQDRGRTYGSLTSTGKSYFDELLSRSFFQALRYGGTVHYVMHDLMNDLAVHVSNGKCYRVEANEPQEIFPEVQHLSILAERVDLLRACKLQRLRTLIIWNKERCYC

Function Disease resistance protein RGA2 [UniProtKB/Swiss-Prot:Q7XBQ9]

Transcripts

Gene Transcript Chromosome Start End Strand Source
LOC_Os06g41670 LOC_Os06g41670.1 Chr06 24954262 24959578 - MSU_osa1r7
CDS seq

ATGGCCACTTTACCACTAGCCACTGGAGTTGGATGGGTAGTATCTCCTGTCATCAAGCTTATGTTTGAGAAGGTCCAATCATATATATCAACTCAGTACAAGTGGCAGTCCAATTTGGTGGATGACCTTAAAAAGCTGGAGACTATTTTAACTGAAATTCTCTTGGTAGTAGGCACTGCAGAAAGGCGGAGAACACTTGATTGCAATCAGCAAGCTTTACTCCGCCAGCTGAAAGATGCTGTCTACGATGCCGAGGACATCATGGATGAATTTGATTACATGTTTCTGAAAGCGAATGCTCAAAAGAGAAAGCTAAGAAGCTTAGGCTCCAGTTCTATCTCTATTGCCAAGCGTTTGGTTGGCCATGACAAGTTTCGGTCCAAATTGGGAAAGATGCTCAAAAGCTTGAGTACAGTAAAGGAATGTGCCCATATGCTCGTCAGGGTGATGGGAGTAGAAAACTTTAGTTCACACATGTTACCTGAGCCCCTTCAATGGCGTATCTCCAGCTCGATTTCAATTGGTGAGTTTGTAGTTGGTCGTCAGAAGGAACGGGAAGAACTAGTGCACCAATTGCTGGAACAATCTGACAAACCTGAATCTAGAAGCAAAGGAGCAAGGTCAACATCATTAGAGGTAATTACTATAGTCGGCAATGGCGGAATTGGAAAAACTACTTTAGCTCAACTTATTTACAATGATAAAAGAATCGAGGATAATTTTGATATGAGGGCATGGGTATGTGTATCACATGTCTTTGATAAGGTCAGAATCACCAAAGAAATCCTAACAACTATTGATAAAAGCATTGACCTAACGAATTTTAATTTTAGCATGCTGCAAGAAGAACTCAAGAACAAAATAACCATGAAGAAGTTTCTACTTGTATTGGATGATGTTTGGTATGATGAAAAGGTTGGGGTACCCATAAATGCTGATAGATGGAGAGAATTGTTTGCTCCTTTATGGCATGGGGCGAAAGTAATCAAGATTTTAGTTACAACTCGAATGGGTATTGTTGCAAATACATTAGGATGTGCCACTCCATTCTGTTTGAGTGGTCTAGAGAGTAAAGATAGCTGGGAACTTTTCAGAAGATGTGCATTTAGCACTAGAGATCCAAATGAACATCTCGAATTGAAGTCTATAGGTGAACACATTGTGCAAAAATTGAATGGATCGGCATTAGCTATAAAGGCTGTTGGTGGGCATCTTAGTTCAAACTTCAACTATGAAGAATGGAATCGAGTTCTAAAAAGTGGTCTATCGAATGAGAAAGATATTATGACAATTTTACGCCTAAGCTATGAATGCTTGCCAGAGCACCTTCAGCAATGCTTTTCGTTCTGTGGTTTGTTCCCAAAAGGTTATTATTTCGAGCCTGACATGTTGGTTAACATGTGGATAGCTCATGAATTTATTCAGGATCGTGGACGCACCTATGGAAGCTTGACAAGCACTGGGAAAAGTTATTTTGATGAGTTGTTATCAAGATCATTTTTCCAGGCACTTCGATATGGAGGTACAGTGCATTATGTTATGCATGACCTCATGAATGATCTTGCTGTCCACGTGTCCAATGGTAAGTGTTACAGAGTAGAAGCCAATGAACCTCAAGAGATTTTTCCAGAAGTTCAACATCTGTCTATACTGGCTGAAAGAGTTGACCTTCTTCGTGCCTGTAAGTTGCAAAGGCTGCGCACCCTAATAATTTGGAATAAAGAAAGATGTTATTGCTAA

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Protein seq

MATLPLATGVGWVVSPVIKLMFEKVQSYISTQYKWQSNLVDDLKKLETILTEILLVVGTAERRRTLDCNQQALLRQLKDAVYDAEDIMDEFDYMFLKANAQKRKLRSLGSSSISIAKRLVGHDKFRSKLGKMLKSLSTVKECAHMLVRVMGVENFSSHMLPEPLQWRISSSISIGEFVVGRQKEREELVHQLLEQSDKPESRSKGARSTSLEVITIVGNGGIGKTTLAQLIYNDKRIEDNFDMRAWVCVSHVFDKVRITKEILTTIDKSIDLTNFNFSMLQEELKNKITMKKFLLVLDDVWYDEKVGVPINADRWRELFAPLWHGAKVIKILVTTRMGIVANTLGCATPFCLSGLESKDSWELFRRCAFSTRDPNEHLELKSIGEHIVQKLNGSALAIKAVGGHLSSNFNYEEWNRVLKSGLSNEKDIMTILRLSYECLPEHLQQCFSFCGLFPKGYYFEPDMLVNMWIAHEFIQDRGRTYGSLTSTGKSYFDELLSRSFFQALRYGGTVHYVMHDLMNDLAVHVSNGKCYRVEANEPQEIFPEVQHLSILAERVDLLRACKLQRLRTLIIWNKERCYC

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.107024

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_06g0621800 RBH 0.268388 0.245533 0.437316
Nipponbare | IRGSP 1.0 | MSU LOC_Os06g41660 RBH 0.465101 0.728113 0.534902
Nipponbare | IRGSP 1.0 | RAP-db Os06g0621800 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_06g0022710 RBH 0.000000 0.000000 0.000000
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_06g0022540 RBH 0.236801 3.483112 1.967490
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_06g0022620 SBH 1.030157 5.872668 6.460638
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_06g0022290 SBH 0.038255 0.053408 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_06g0022740 RBH 0.163133 0.000000 0.679083
Minghui 63 | MH63RS3 | HZAU OsMH63_06G0391800 SBH 0.7653995 0.9383945 2.9634885
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_06g0022190 RBH 0.0 0.024995 0.283764
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_06G0372000 SBH 1.2442655 4.2603205 3.8631925
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_06g0022660 RBH 0.037759 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_06g0022570 RBH 0.0 0.470782 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_06g0022220 RBH 1.559182 5.764866 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_06g0022960 RBH 0.0 0.026449 0.104927
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_06g0022560 RBH 0.0 0.000000 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_06G022240 SBH 0.244803 0.498085 0.810879
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_06g0022520 RBH 0.074060 0.0 0.611186
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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