Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os06g0621800 | OGI:06070600 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr06:24974772-24978046 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTGAAAAAATGATCTAGATAATAGTTCATTGAAATAACTTCTACCAGTTTCTCTCATACTTTCATATGTGCCTATATGACCATGAACAAATTTATGGGCTATCCACATATTCACCAACAAGTCAGGCTCAAGAGAATAGCCTTTGGGGAACAGGCTGCAAAAAGTAAAACATTGCTGGAGGTGACCTGGCAAGCATTCATAGCTCAGACGCAAAATTTGCATAATGTCTTCCTTGTTTGATGAACTACTTTTCATAACTCGTGTCCACTCTTCAACGTTGAGGTTAGCATTCAAATGTGCACCAACAACCTTTATGACTAATGCTGAGCCATTCAACTTTTGGACAATACATTCACCGATAGACTCTAGTTCTGGATAATTTCCTGGATCTTCAGCGCCAAATGCGCAGATCCTGAAGAGGTTCCAACTATCTTCACCCTTCAGACCCTCCAAATGGAATGGTGCTGGGCAACCCAAAATCCTTGAAACAATATTTGTTCGAGCAGTAACAAGAATTTTGCTTCCTTTAGCTCCATAGCATAGAGGAGCAAACAATTCTCTCCATCTATCAGCATTTGTAAGCTCACCAATCTTTTCATCATACCACACATCATCTAGCACAAGTAGAAACTTCTTTGCTGTTAACTTGTTCTTAAGATCTTCCTGGAGCATGTTAAAACTGAAATTTGTTATATCACTGTTTCTATCAATTGATTTCAAAATCTCTTTGGTGATTTTGACCTTATTGAAGATATTTGAAACATATATCCATGTCCTCAGATCAAAACCACTGACTATTCTTCTGTCATTGTAAATAAGCTGAGCTAATGCAGTTTTCCCAATGCCACCACTGCCAACTATGGTAATTATAGATGGTGTTGGTGATATTGTTAGTCCTCTGCTTGGCTCTGGTCCATCAGCTTCTCTCAGAAGTCGGTGCACTAGATCATCCTGCTCATTTTGTCGGCCAATGATAATTTGGCCAGGAGAAATTGAGCTGGTGACACGCCATTGAAGTGGCTGAGGAGGCATATATGAATTAGAGTTTTCAGCCCCAATCACTTTGATGAGCATGTCAGCACATTCTTTTACTCTAATCAGGCTATTGAGGACCCTCCTTAACTTGGATCTGAACTTGTCTTGGCCAACCAAACGCTTTCCTATGGCAAGAGAACTGGAGGCCAAGCTACTTAGCTTGCTCTTCTGCTGAGCATTTGCCTTCAGAATCAGGTAATCAAATTCATCCATGACGTCGTCGGCATCATAGGCAGAATCTTTCATTTTGGCAAAGTAGAGCTTCTTGGTTGCAATCTAGCATTTGCGACCTTTCAGCAGCACCCAGCACCAATTGGATTTTTATCAAAGTGGATTCGATCTTTTTTAGATCATCCTCCAAGTCAGATTGCCACTTGTACTGGGTTGATGTATAAGATTGGACCTTCTCAAAGATAAGCTTGATGATAGGACAAACTACCCACCCAATGCCGGTGGCTATTGGTAGTGTAGCCATGTTGGTCAATGTACAAACCTATTTCCCTTTTTTTCAAAATATACTGTTTTCTTCAAATGACCATTACAGCTTGAAACTCAATAATCCATTCACCTAATAAACATTGAAAATAATTAGAACTAACCAAAATAAGAAATTATTGCTCAAAGATGCAGTCAATATGGGCTACTCTACTCTTAAACTCTATCAGGCCATGTATAAGAAGACCGAAATATGGGCCTCAAACACAAATTTGCAACTTTAACGGCAAAAATTGGATACACGAGTAAGAGTAAATATTGTCTTCATTCTTCAATGATGCAGTCAGAAAACAGAATAGGACAACTGCCAGCTAGTGATTATTGAAATATTGTTTACCTGACTAGTAGTAAGATCAGAACTGCAGCTCACTCCTAGAAGAAGAGGCCCTTGATCTTTCTTCTTGCTGATCAAATGCAAGGCTGCTTTCAGAGAGAAACTAGGAGGAGAGCCAGATTCAAACAGAGGGAAATGGGAGTAAACCACAAATGGATGTGCAAGAAAGTTGACTTCCACCTCTTCAAACAAAGAAAAAAGGAGAGGTTTTTTCAACTTTGAGTAAAGAATTACTCCGTATCTTGTATGCATCCCACGTTCTCACACAAACAACAGCTGGAGGGCTTTATTAGCCGGGTTGACCAAAGAGACGACCAACCAAATCTTATAACAGCTGGAGAGCGGAGGTAGGTACACTCCACCTAGCAGAATAGGTGGAATCACCGTGAAATTCCAGCGGTTTGGCTTCCGATGCATCAAAGCAGGCAGTGGCAGTCGGTCTGTGGAGAAAGTTTTACTAACAAATTGTTCCGTATGAGATGCCAAGAAAATAATATACAGACTGTTTTGCCACTTAGAGTCTTGAGGAAGGGGAGGAGTTTAGATGAAAGTGTTGGTGTGGGATTAAAGTCTATCTTCTATTACCAATCCTAGCTCTGTGTGTAATGCTGATTGCGTTTTACCAAGCAACTACAATATAAAATATCTGGTTGGTTATAAAAAAATTAGCTTGGATGTAGTATCATAAGGAGCTAAGATCTACTCATCTCTCTGCTTTAAAAAAAAAGGATTTCTCTCCTGTATTGAAATGATGGTGTTGATCCCTTATATTTTCCATCCCTGTTGAATTCCTACATCCATCAACAGACAAGAAAAAAAATGGTATTGAAATGATGGTGTATCAATCCCTTATATTTTCCATCCCTGTTAAATTCCTACATCCATCCACTGACAAGAAAAAAAAATGTTAATAATAACATCAAACCCGCTCAACTCCTATTAGTTTCATTCCCTCTCAATAATCCACTAATCCACTAATCATTCCCTTAGGACAACACATGATTGACTTCACCGATGTGCGACATTTAAAAACTCTACGGAGACTTTACCCTAAGATTAAGAAAAAGCGTTACCAGGGCGGGCCAGCCGGCTCTGCAAAACGAGGCGGTGGCGGCGGCACGGCGGAGCCGAGCGGCGCCAAACAAGCCATTGGTCTGGGGGACATACTTCCACCGTGTGCAGCCACAAGCGCGCTCTCACCTCGCGCCACCACCCAATCGGTGAATTGGGAGGCGCCGCCATCGCCGCCGCCGCCTTCTTCCCTTTCGGCGGTGCAGCGCTCCCGGATCTCGGTTCGCGAGGGGAGGCCATGGGCGAACCCGCCGGTGGAATTCCCCAGCCTGCGCCGGCCGCGACGGAGGCGTTCGCCGGCCGCCGGTGGCCGCGGGCGATGAAATCTGTTGACGAGACA
More
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| CDS seq | ATGGCTACACTACCAATAGCCACCGGCATTGGGTGGGTAGTTTGTCCTATCATCAAGCTTATCTTTGAGAAGGTCCAATCTTATACATCAACCCAGTACAAGTGGCAATCTGACTTGGAGGATGATCTAAAAAAGATCGAATCCACTTTGATAAAAATCCAATTGGTGCTGGGTGCTGCTGAAAGGTCGCAAATGCTAGATTGCAACCAAGAAGCTCTACTTTGCCAAAATGAAAGATTCTGCCTATGA |
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| Protein seq | MATLPIATGIGWVVCPIIKLIFEKVQSYTSTQYKWQSDLEDDLKKIESTLIKIQLVLGAAERSQMLDCNQEALLCQNERFCL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os06g0621800 | Os06t0621800-01 | Chr06 | 24974772 | 24978046 | - | irgsp1_rep | ||
| CDS seq | ATGGCTACACTACCAATAGCCACCGGCATTGGGTGGGTAGTTTGTCCTATCATCAAGCTTATCTTTGAGAAGGTCCAATCTTATACATCAACCCAGTACAAGTGGCAATCTGACTTGGAGGATGATCTAAAAAAGATCGAATCCACTTTGATAAAAATCCAATTGGTGCTGGGTGCTGCTGAAAGGTCGCAAATGCTAGATTGCAACCAAGAAGCTCTACTTTGCCAAAATGAAAGATTCTGCCTATGA
More
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| Protein seq | MATLPIATGIGWVVCPIIKLIFEKVQSYTSTQYKWQSDLEDDLKKIESTLIKIQLVLGAAERSQMLDCNQEALLCQNERFCL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0621800 | RBH | 0.268388 | 0.245533 | 0.437316 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g41670 | RBH | 0.0 | 0.0 | 0.107024 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0022670 | SBH | 0.229395 | 6.668854 | 0.322669 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0022510 | SBH | 0.000000 | 0.000000 | 0.402157 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0022600 | SBH | 0.530510 | 1.126720 | 2.169543 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0022270 | SBH | 0.068177 | 0.045811 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0022670 | SBH | 0.749143 | 0.0 | 2.654303 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0392600 | SBH | 0.0119685 | 0.059671 | 0.060281 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0022120 | SBH | 0.043419 | 0.0 | 0.180003 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0372000 | SBH | 1.2442655 | 4.2603205 | 3.8631925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0022590 | SBH | 0.042101 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0022500 | SBH | 0.098007 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0022200 | SBH | 0.000000 | 4.940397 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0022890 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0022490 | SBH | 0.042246 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G022220 | RBH | 0.315813 | 0.000000 | 0.731581 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0022450 | SBH | 0.0 | 0.0 | 1.756431 |
