Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
LOC_Os06g07440 OGI:06010590 | 2/16 Nipponbare | IRGSP 1.0 | MSU Chr06:3577350-3579641
Gene Symbol -
DNA seq

TCAAGGGTTTACATCAATTTCATCATCAAGATACATATTCTCATAAGCATTTTGAAGCTCCACATTCTCAGTAGTATGCTGACTTTTTGCATCTGCTAGCTCCCAGTCCTTGATCACTGCCAGAATTTCCACCAGCCTAGGGTTTAGACGCCGCCGACGGTCCTCGATGATCCTGCCAGTTAAGCTAAAAGTAGACTCGGACGATATAGTAGAAACAGGAACAGTCATAACATCTTTAGCTAAGATTGAAAGAACAGGATAAGTTAGTTTGTGCTGTTGCCACCAACTAAGGATATTGAAGTCATTATCATATTGGTTGACAGTGTCACTGTCAAGATATGCAGACAGTTCAGAAGGATTGAGATTAGCAGTTGAAGAAGCTGCCTGAAGCAAAGCAGTAGCAGATGTCATCCTGGATAATGAACCAGCACCAAGCCCAGCACCTGGACTGGCATCAGCATTACCAGCACCAAGCCCAGCACCTGGACTGGCACCAGCATTACCAGCACCTGGACTGGCACCTGCATTACCAGCACCAAGCCCAGCAGCAACAACAGAACCAAAAATCTTCCCCCATGCAGTCCTTTTCTTACCAGTGGAAGGGCCTGGAATAGTGGAACTATGCAATCTAACAGAACCAAACTTTCTTTCATACTTAGCAAAAGTATCAGACAATGAAGCTCTAACAGTTGTTAAATAAGCAGAGTAATCATCACTAATGAGTTGAGCCATAATCTGAAGCACTTTACTAAACCCCCTAATCTTGGCCCTAGGGTCCAAGATAAATGCAAATGAATAAAGAATTGGAATTTTAGACCAGTAGTTCATAAACTTAGTTTTCATGGGACCAACAACATTTGCAAGGTTTTGAACATTGCCATATGTGTTTAGATGTCCAGCAATCTCTAAAATGTGATGCATGATTAATGGAGATGTTGGATAATAAACACCAGACAAAACAACAGTTGAATCATAAAATTGTTCAAGGAAACACAAAACAGATTCAGCACATGCCCAATGTAAGTCTGTGAGTAATGGATGGTCATTAACAAAAGGATGTTGTGTACTAATAAATACTGTGAATGGTTCCCTATGTGGTATGAGATGCTTAAGCATTAGATAAGTTGAATTCCATCTAACATCCATGTCCAAACCAAACATACGAGGACGATAACCCGCAGCAATGCAAACATTTTTATATGTAGCAATGCGCTGATTAGATGCATTCAAGAATGAAATGGCAGCTCTAATGTCATTTAGCATGGGCTTGAACTTGTCAAGTCCAGCCTTAACAATCAAATTGATGATATGACATGCACAGCGTTGATGCAAAAATAAATCACCAATATAACCAGACAGAGCAGGAGTAAGGGTGTCCATAGCTTTAGAATTAGCAGAAGCATTGTCTAATGTAATAGAGAAAACCTTATCAGTAATACCATATTCTTCAGCAACAGCAATCACACGCTCAGCAATATTAGCACCAGTATGTGACTCATCAATAAGCCTAAGACCCAAGACCCTCTTTTCTAATTGCCAATAAGAACTAACAAAGTGAGCTACAACACTCAAATAATCTTCCTTAGCATGACCAGACCATATATCAGATGTCAAAGCAATAGAGCTAGCAGAATTGAGACGATCAATAATAACAGAACGACGATCCTTAAACAACTTATAAAAATCTCTGGTAGTAGTTTGTCTAGAGACAGGAACAAATCTAGGGTTATGAGCAGCCTTAATATAGTTCACAAAAGCAGGAGATTGACCAAAACTGATTGGAAGATCCTCTCTAGCAATCAATCTACACAATTCAAACCTAGCAACTTCAGGACTATATTCCCATGGAATAACAGAACCATCTGCACTAAATCTAAGCATGGACTGAGGCAAAGCATTAGACCCAAGCTTTCTAGGTTTGCATGACTTAATATGCCTAAGCAAATGTCCAGTGCCAGCAGAAGAACGAGCACTCAAAGTTTTATGACAGTAATTGCATTTAGCAGAGACTCGAACCCTATTACCATTGGTCGTTTCATAAAGTTCCTCAAAGTCATCCCATACCTTGGAGGTTTTGGTCTTCTTGTTGGTACAAGTCGCACTAGAGCCAGTCGGCGTCCCATTGCCACTGTCGTCGACCGGCGGGTCGTCGTCATCGACATTCACATGGATCGGGATGTCGGAGGTATTGCCGAACACCTCCACACGATCCTCCTCCACATCATCATCGTCATCACCGCGCATCCCCATAGTCCTCAACTCGTAGTTGACAGAGGTAGGATCGTCGTCCAT

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CDS seq

ATGGACGACGATCCTACCTCTGTCAACTACGAGTTGAGGACTATGGGGATGCGCGGTGATGACGATGATGATGTGGAGGAGGATCGTGTGGAGGTGTTCGGCAATACCTCCGACATCCCGATCCATGTGAATGTCGATGACGACGACCCGCCGGTCGACGACAGTGGCAATGGGACGCCGACTGGCTCTAGTGCGACTTGTACCAACAAGAAGACCAAAACCTCCAAGGTATGGGATGACTTTGAGGAACTTTATGAAACGACCAATGGTAATAGGGTTCGAGTCTCTGCTAAATGCAATTACTGTCATAAAACTTTGAGTGCTCGTTCTTCTGCTGGCACTGGACATTTGCTTAGGCATATTAAGTCATGCAAACCTAGAAAGCTTGGGTCTAATGCTTTGCCTCAGTCCATGCTTAGATTTAGTGCAGATGGTTCTGTTATTCCATGGGAATATAGTCCTGAAGTTGCTAGGTTTGAATTGTGTAGATTGATTGCTAGAGAGGATCTTCCAATCAGTTTTGGTCAATCTCCTGCTTTTGTGAACTATATTAAGGCTGCTCATAACCCTAGATTTGTTCCTGTCTCTAGACAAACTACTACCAGAGATTTTTATAAGTTGTTTAAGGATCGTCGTTCTGTTATTATTGATCGTCTCAATTCTGCTAGCTCTATTGCTTTGACATCTGATATATGGTCTGGTCATGCTAAGGAAGATTATTTGAGTGTTGTAGCTCACTTTGTTAGTTCTTATTGGCAATTAGAAAAGAGGGTCTTGGGTCTTAGGCTTATTGATGAGTCACATACTGGTGCTAATATTGCTGAGCGTGTGATTGCTGTTGCTGAAGAATATGGTATTACTGATAAGGTTTTCTCTATTACATTAGACAATGCTTCTGCTAATTCTAAAGCTATGGACACCCTTACTCCTGCTCTGTCTGGTTATATTGGTGATTTATTTTTGCATCAACGCTGTGCATGTCATATCATCAATTTGATTGTTAAGGCTGGACTTGACAAGTTCAAGCCCATGCTAAATGACATTAGAGCTGCCATTTCATTCTTGAATGCATCTAATCAGCGCATTGCTACATATAAAAATGTTTGCATTGCTGCGGGTTATCGTCCTCGTATGTTTGGTTTGGACATGGATGTTAGATGGAATTCAACTTATCTAATGCTTAAGCATCTCATACCACATAGGGAACCATTCACAGTATTTATTAGTACACAACATCCTTTTGTTAATGACCATCCATTACTCACAGACTTACATTGGGCATGTGCTGAATCTGTTTTGTGTTTCCTTGAACAATTTTATGATTCAACTGTTGTTTTGTCTGGTGTTTATTATCCAACATCTCCATTAATCATGCATCACATTTTAGAGATTGCTGGACATCTAAACACATATGGCAATGTTCAAAACCTTGCAAATGTTGTTGGTCCCATGAAAACTAAGTTTATGAACTACTGGTCTAAAATTCCAATTCTTTATTCATTTGCATTTATCTTGGACCCTAGGGCCAAGATTAGGGGGTTTAGTAAAGTGCTTCAGATTATGGCTCAACTCATTAGTGATGATTACTCTGCTTATTTAACAACTGTTAGAGCTTCATTGTCTGATACTTTTGCTAAGTATGAAAGAAAGTTTGGTTCTGTTAGATTGCATAGTTCCACTATTCCAGGCCCTTCCACTGGTAAGAAAAGGACTGCATGGGGGAAGATTTTTGGTTCTGTTGTTGCTGCTGGGCTTGGTGCTGGTAATGCAGGTGCCAGTCCAGGTGCTGGTAATGCTGGTGCCAGTCCAGGTGCTGGGCTTGGTGCTGGTAATGCTGATGCCAGTCCAGGTGCTGGGCTTGGTGCTGGTTCATTATCCAGGATGACATCTGCTACTGCTTTGCTTCAGGCAGCTTCTTCAACTGCTAATCTCAATCCTTCTGAACTGTCTGCATATCTTGACAGTGACACTGTCAACCAATATGATAATGACTTCAATATCCTTAGTTGGTGGCAACAGCACAAACTAACTTATCCTGTTCTTTCAATCTTAGCTAAAGATGTTATGACTGTTCCTGTTTCTACTATATCGTCCGAGTCTACTTTTAGCTTAACTGGCAGGATCATCGAGGACCGTCGGCGGCGTCTAAACCCTAGGCTGGTGGAAATTCTGGCAGTGATCAAGGACTGGGAGCTAGCAGATGCAAAAAGTCAGCATACTACTGAGAATGTGGAGCTTCAAAATGCTTATGAGAATATGTATCTTGATGATGAAATTGATGTAAACCCTTGA

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Protein seq

MDDDPTSVNYELRTMGMRGDDDDDVEEDRVEVFGNTSDIPIHVNVDDDDPPVDDSGNGTPTGSSATCTNKKTKTSKVWDDFEELYETTNGNRVRVSAKCNYCHKTLSARSSAGTGHLLRHIKSCKPRKLGSNALPQSMLRFSADGSVIPWEYSPEVARFELCRLIAREDLPISFGQSPAFVNYIKAAHNPRFVPVSRQTTTRDFYKLFKDRRSVIIDRLNSASSIALTSDIWSGHAKEDYLSVVAHFVSSYWQLEKRVLGLRLIDESHTGANIAERVIAVAEEYGITDKVFSITLDNASANSKAMDTLTPALSGYIGDLFLHQRCACHIINLIVKAGLDKFKPMLNDIRAAISFLNASNQRIATYKNVCIAAGYRPRMFGLDMDVRWNSTYLMLKHLIPHREPFTVFISTQHPFVNDHPLLTDLHWACAESVLCFLEQFYDSTVVLSGVYYPTSPLIMHHILEIAGHLNTYGNVQNLANVVGPMKTKFMNYWSKIPILYSFAFILDPRAKIRGFSKVLQIMAQLISDDYSAYLTTVRASLSDTFAKYERKFGSVRLHSSTIPGPSTGKKRTAWGKIFGSVVAAGLGAGNAGASPGAGNAGASPGAGLGAGNADASPGAGLGAGSLSRMTSATALLQAASSTANLNPSELSAYLDSDTVNQYDNDFNILSWWQQHKLTYPVLSILAKDVMTVPVSTISSESTFSLTGRIIEDRRRRLNPRLVEILAVIKDWELADAKSQHTTENVELQNAYENMYLDDEIDVNP

Function Zinc finger BED domain-containing protein RICESLEEPER 2 [UniProtKB/Swiss-Prot:Q6AVI0]

Transcripts

Gene Transcript Chromosome Start End Strand Source
LOC_Os06g07440 LOC_Os06g07440.1 Chr06 3577350 3579641 - MSU_osa1r7
CDS seq

ATGGACGACGATCCTACCTCTGTCAACTACGAGTTGAGGACTATGGGGATGCGCGGTGATGACGATGATGATGTGGAGGAGGATCGTGTGGAGGTGTTCGGCAATACCTCCGACATCCCGATCCATGTGAATGTCGATGACGACGACCCGCCGGTCGACGACAGTGGCAATGGGACGCCGACTGGCTCTAGTGCGACTTGTACCAACAAGAAGACCAAAACCTCCAAGGTATGGGATGACTTTGAGGAACTTTATGAAACGACCAATGGTAATAGGGTTCGAGTCTCTGCTAAATGCAATTACTGTCATAAAACTTTGAGTGCTCGTTCTTCTGCTGGCACTGGACATTTGCTTAGGCATATTAAGTCATGCAAACCTAGAAAGCTTGGGTCTAATGCTTTGCCTCAGTCCATGCTTAGATTTAGTGCAGATGGTTCTGTTATTCCATGGGAATATAGTCCTGAAGTTGCTAGGTTTGAATTGTGTAGATTGATTGCTAGAGAGGATCTTCCAATCAGTTTTGGTCAATCTCCTGCTTTTGTGAACTATATTAAGGCTGCTCATAACCCTAGATTTGTTCCTGTCTCTAGACAAACTACTACCAGAGATTTTTATAAGTTGTTTAAGGATCGTCGTTCTGTTATTATTGATCGTCTCAATTCTGCTAGCTCTATTGCTTTGACATCTGATATATGGTCTGGTCATGCTAAGGAAGATTATTTGAGTGTTGTAGCTCACTTTGTTAGTTCTTATTGGCAATTAGAAAAGAGGGTCTTGGGTCTTAGGCTTATTGATGAGTCACATACTGGTGCTAATATTGCTGAGCGTGTGATTGCTGTTGCTGAAGAATATGGTATTACTGATAAGGTTTTCTCTATTACATTAGACAATGCTTCTGCTAATTCTAAAGCTATGGACACCCTTACTCCTGCTCTGTCTGGTTATATTGGTGATTTATTTTTGCATCAACGCTGTGCATGTCATATCATCAATTTGATTGTTAAGGCTGGACTTGACAAGTTCAAGCCCATGCTAAATGACATTAGAGCTGCCATTTCATTCTTGAATGCATCTAATCAGCGCATTGCTACATATAAAAATGTTTGCATTGCTGCGGGTTATCGTCCTCGTATGTTTGGTTTGGACATGGATGTTAGATGGAATTCAACTTATCTAATGCTTAAGCATCTCATACCACATAGGGAACCATTCACAGTATTTATTAGTACACAACATCCTTTTGTTAATGACCATCCATTACTCACAGACTTACATTGGGCATGTGCTGAATCTGTTTTGTGTTTCCTTGAACAATTTTATGATTCAACTGTTGTTTTGTCTGGTGTTTATTATCCAACATCTCCATTAATCATGCATCACATTTTAGAGATTGCTGGACATCTAAACACATATGGCAATGTTCAAAACCTTGCAAATGTTGTTGGTCCCATGAAAACTAAGTTTATGAACTACTGGTCTAAAATTCCAATTCTTTATTCATTTGCATTTATCTTGGACCCTAGGGCCAAGATTAGGGGGTTTAGTAAAGTGCTTCAGATTATGGCTCAACTCATTAGTGATGATTACTCTGCTTATTTAACAACTGTTAGAGCTTCATTGTCTGATACTTTTGCTAAGTATGAAAGAAAGTTTGGTTCTGTTAGATTGCATAGTTCCACTATTCCAGGCCCTTCCACTGGTAAGAAAAGGACTGCATGGGGGAAGATTTTTGGTTCTGTTGTTGCTGCTGGGCTTGGTGCTGGTAATGCAGGTGCCAGTCCAGGTGCTGGTAATGCTGGTGCCAGTCCAGGTGCTGGGCTTGGTGCTGGTAATGCTGATGCCAGTCCAGGTGCTGGGCTTGGTGCTGGTTCATTATCCAGGATGACATCTGCTACTGCTTTGCTTCAGGCAGCTTCTTCAACTGCTAATCTCAATCCTTCTGAACTGTCTGCATATCTTGACAGTGACACTGTCAACCAATATGATAATGACTTCAATATCCTTAGTTGGTGGCAACAGCACAAACTAACTTATCCTGTTCTTTCAATCTTAGCTAAAGATGTTATGACTGTTCCTGTTTCTACTATATCGTCCGAGTCTACTTTTAGCTTAACTGGCAGGATCATCGAGGACCGTCGGCGGCGTCTAAACCCTAGGCTGGTGGAAATTCTGGCAGTGATCAAGGACTGGGAGCTAGCAGATGCAAAAAGTCAGCATACTACTGAGAATGTGGAGCTTCAAAATGCTTATGAGAATATGTATCTTGATGATGAAATTGATGTAAACCCTTGA

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Protein seq

MDDDPTSVNYELRTMGMRGDDDDDVEEDRVEVFGNTSDIPIHVNVDDDDPPVDDSGNGTPTGSSATCTNKKTKTSKVWDDFEELYETTNGNRVRVSAKCNYCHKTLSARSSAGTGHLLRHIKSCKPRKLGSNALPQSMLRFSADGSVIPWEYSPEVARFELCRLIAREDLPISFGQSPAFVNYIKAAHNPRFVPVSRQTTTRDFYKLFKDRRSVIIDRLNSASSIALTSDIWSGHAKEDYLSVVAHFVSSYWQLEKRVLGLRLIDESHTGANIAERVIAVAEEYGITDKVFSITLDNASANSKAMDTLTPALSGYIGDLFLHQRCACHIINLIVKAGLDKFKPMLNDIRAAISFLNASNQRIATYKNVCIAAGYRPRMFGLDMDVRWNSTYLMLKHLIPHREPFTVFISTQHPFVNDHPLLTDLHWACAESVLCFLEQFYDSTVVLSGVYYPTSPLIMHHILEIAGHLNTYGNVQNLANVVGPMKTKFMNYWSKIPILYSFAFILDPRAKIRGFSKVLQIMAQLISDDYSAYLTTVRASLSDTFAKYERKFGSVRLHSSTIPGPSTGKKRTAWGKIFGSVVAAGLGAGNAGASPGAGNAGASPGAGLGAGNADASPGAGLGAGSLSRMTSATALLQAASSTANLNPSELSAYLDSDTVNQYDNDFNILSWWQQHKLTYPVLSILAKDVMTVPVSTISSESTFSLTGRIIEDRRRRLNPRLVEILAVIKDWELADAKSQHTTENVELQNAYENMYLDDEIDVNP

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.000000

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) NA NA NA NA NA
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g15380 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db NA NA NA NA NA
Azucena | AzucenaRS1 | Gramene(+IsoSeq) NA NA NA NA NA
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_06g0010400 SBH 1.028011 1.880187 4.008380
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) NA NA NA NA NA
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_06g0010400 SBH 0.460528 0.406389 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Minghui 63 | MH63RS3 | HZAU OsMH63_06G0062900 RBH 0 0 0.0125365
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_06G0140900 SBH 0 0 0
LIMA | Os127564RS1 | Gramene(+IsoSeq) NA NA NA NA NA
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) NA NA NA NA NA
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LIU XU | Os125827RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) NA NA NA NA NA
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) NA NA NA NA NA
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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