Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g15380 | OGI:01027030 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:8618914-8621205 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAAGGGTTTACATCAATTTCATCATCAAGATACATATTCTCATAAGCATTTTGAAGCTCCACATTCTCAGTAGTATGCTGACTTTTTGCATCTGCTAGCTCCCAGTCCTTGATCATTGCCAGAATTTCCACCAGCCTAGGGTTTAGACGCCGCCGACGGTCCTCGATGATCCTGCCAGTTAAGCTAAAAGTAGACTCGGACGATATAGTAGAAACAGGAACAGTCATAACATCTTTAGCTAAGATTGAAAGAACAGGATAAGTTAGTTTGTGCTGTTGCCACCAACTAAGGATATTGAAGTCATCATCATATTGGTTGACAGTGTCACTGTCAAGATATGCAGACAGTTCAGAAGAATTGAGATTAGCAGTTGAAGAAGCTGCCTGAAGCAAAGCAGTAGCAGATGTCATCCTGGATAATGAACCAGCACCAAGCCCAGCACCTGGACTGGCACCAGCATTACCAGCACCAAGCCCAGCACCTGGACTGGCACCAGCATTACCAGCACCTGGACTGGCACCTGCATTACCAGCACCAAGCCCAACAGCAACAACAGAACCAAAAATCTTCCCCCATGCAGTCCTTTTCTTACCAGTGGAAGGGCCTGGAATAGTGGAACTATGCAATCTAACAGAACCAAACTTTCTTTCATACTTAGCAAAAGTATCAAACAATGAAGCTCTAACAGTTGTTAAATAAGCAGAATAATCATCACCAATGAGTTGAGCCATAATCTGAAGCACTTTACTAAACCCCCTAATCTTGGCCCTAGGGTCCAAGATAAATGCAAATGAATAAAGAATTGGAATTTTAGACCAATAGTTCATAAACTTAGTTTTCATGGGACCAACAACATTTGCAATGTTTTGAACATTGCCATATGTGTTTAGATGTCCAGCAATCTCTAAAATGTGATGCATGATTAATGGAGATGTTGGATAATAAACACCAGACAAAACAACAGTTGAATCATAAAATTGTTCAAGGAAACACAAAACAGATTCAGCACATGCCCAATGTAAGTCTGTGAGTAATGGATGGTCATTAACAAAAGGATGTTGTGTACTAATAAATACTGTGAATGGTTCCCTATGTGGTATGAGATGCTTAAGCATTAGATAAGTTGAATTCCATCTAACATCCATGTCCAAACCAAACATACGAGGACGATAACCCGCAGCAATGCAAACATTTTTATATGTAGCAATGCGCTGATTAGATGCATTCAAGAATGAAATGGCAGCTCTAATGTCATTTAGCATGGGCTTGAACTTGTCAAGTCCAGCCTTAACAATCAAATTGATGATATGACATGCACAGCGTTGATGCAAAAATAAATCACCAATATAACCAAACAGAGCAGGAGTAAGGGTGATCATAGCTTTAGAATTAGCAGAAGCATTGTCTAATGTAATAGAGAAAACCTTATCAGTAATACCATATTCTTCAGCAACAGCAATCACACGCTCAGCAATATTAGCACCAGTATGTGACTCATCAATAAGCCTAAGACCCAAGACCCTCTTTTCTAATTGCCAATCAGAATTAACAAAGTGAGCTACAACACTCAAATAATCTTCCTTAGCATGACCAGACCATATATCAGATGTCAAAGCAATAGAGCTAGCAGAATTGAGACGATCAATAATAACAGAACGACGATCCTTAAACAACTTATAAAAATCTCTGGTAGTAGTTTGTCTAGAGACAGGAACAAATCTAGGGTTATGAGCAGCCTTAATATAGTTCACAAAAGCAGGAGATTGACCAAAACTGATTGGAAGATCCTCTCTAGCAATCAATCTACACAATTCAAACCTAGCATCTTCAGGACTATATTCCCATGGAATAACAGAACCATCTGCACTAAATCTAAGCATGGACTGAGGCAAAGCATTAGACCCAAGCTTTCTAGGTTTGCATGACTTAATATGCCTAAGCAAATGTCCAGTGCCAGCAGAAGAACGAGCACTCAAAGTTTTATGACAGTAATTGCATTTAGCAGAGACTCGAACCCTATTACCATTGGTCGTTTCATAAAGTTCCTCAAAGTCATCCCATACCTTGGAGGTTTTGGTCTTCTTGTTGGTACAAGTCGCACTAGAGCCAGTCGGCGTCCCATTGCCACTGTCGTCGACCGGCGGGTCGTCGTCATCGACATTCACATGGATCGGGATGTCGGAGGTATTGCCGAACACCTCCACACGATCCTCCTCCACATCATCATCGTCATCACCGCGCATCCCCATAGTCCTCAACTCGTAGTTGACAGAGGTAGGATCGTCGTCCAT
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| CDS seq | ATGGACGACGATCCTACCTCTGTCAACTACGAGTTGAGGACTATGGGGATGCGCGGTGATGACGATGATGATGTGGAGGAGGATCGTGTGGAGGTGTTCGGCAATACCTCCGACATCCCGATCCATGTGAATGTCGATGACGACGACCCGCCGGTCGACGACAGTGGCAATGGGACGCCGACTGGCTCTAGTGCGACTTGTACCAACAAGAAGACCAAAACCTCCAAGGTATGGGATGACTTTGAGGAACTTTATGAAACGACCAATGGTAATAGGGTTCGAGTCTCTGCTAAATGCAATTACTGTCATAAAACTTTGAGTGCTCGTTCTTCTGCTGGCACTGGACATTTGCTTAGGCATATTAAGTCATGCAAACCTAGAAAGCTTGGGTCTAATGCTTTGCCTCAGTCCATGCTTAGATTTAGTGCAGATGGTTCTGTTATTCCATGGGAATATAGTCCTGAAGATGCTAGGTTTGAATTGTGTAGATTGATTGCTAGAGAGGATCTTCCAATCAGTTTTGGTCAATCTCCTGCTTTTGTGAACTATATTAAGGCTGCTCATAACCCTAGATTTGTTCCTGTCTCTAGACAAACTACTACCAGAGATTTTTATAAGTTGTTTAAGGATCGTCGTTCTGTTATTATTGATCGTCTCAATTCTGCTAGCTCTATTGCTTTGACATCTGATATATGGTCTGGTCATGCTAAGGAAGATTATTTGAGTGTTGTAGCTCACTTTGTTAATTCTGATTGGCAATTAGAAAAGAGGGTCTTGGGTCTTAGGCTTATTGATGAGTCACATACTGGTGCTAATATTGCTGAGCGTGTGATTGCTGTTGCTGAAGAATATGGTATTACTGATAAGGTTTTCTCTATTACATTAGACAATGCTTCTGCTAATTCTAAAGCTATGATCACCCTTACTCCTGCTCTGTTTGGTTATATTGGTGATTTATTTTTGCATCAACGCTGTGCATGTCATATCATCAATTTGATTGTTAAGGCTGGACTTGACAAGTTCAAGCCCATGCTAAATGACATTAGAGCTGCCATTTCATTCTTGAATGCATCTAATCAGCGCATTGCTACATATAAAAATGTTTGCATTGCTGCGGGTTATCGTCCTCGTATGTTTGGTTTGGACATGGATGTTAGATGGAATTCAACTTATCTAATGCTTAAGCATCTCATACCACATAGGGAACCATTCACAGTATTTATTAGTACACAACATCCTTTTGTTAATGACCATCCATTACTCACAGACTTACATTGGGCATGTGCTGAATCTGTTTTGTGTTTCCTTGAACAATTTTATGATTCAACTGTTGTTTTGTCTGGTGTTTATTATCCAACATCTCCATTAATCATGCATCACATTTTAGAGATTGCTGGACATCTAAACACATATGGCAATGTTCAAAACATTGCAAATGTTGTTGGTCCCATGAAAACTAAGTTTATGAACTATTGGTCTAAAATTCCAATTCTTTATTCATTTGCATTTATCTTGGACCCTAGGGCCAAGATTAGGGGGTTTAGTAAAGTGCTTCAGATTATGGCTCAACTCATTGGTGATGATTATTCTGCTTATTTAACAACTGTTAGAGCTTCATTGTTTGATACTTTTGCTAAGTATGAAAGAAAGTTTGGTTCTGTTAGATTGCATAGTTCCACTATTCCAGGCCCTTCCACTGGTAAGAAAAGGACTGCATGGGGGAAGATTTTTGGTTCTGTTGTTGCTGTTGGGCTTGGTGCTGGTAATGCAGGTGCCAGTCCAGGTGCTGGTAATGCTGGTGCCAGTCCAGGTGCTGGGCTTGGTGCTGGTAATGCTGGTGCCAGTCCAGGTGCTGGGCTTGGTGCTGGTTCATTATCCAGGATGACATCTGCTACTGCTTTGCTTCAGGCAGCTTCTTCAACTGCTAATCTCAATTCTTCTGAACTGTCTGCATATCTTGACAGTGACACTGTCAACCAATATGATGATGACTTCAATATCCTTAGTTGGTGGCAACAGCACAAACTAACTTATCCTGTTCTTTCAATCTTAGCTAAAGATGTTATGACTGTTCCTGTTTCTACTATATCGTCCGAGTCTACTTTTAGCTTAACTGGCAGGATCATCGAGGACCGTCGGCGGCGTCTAAACCCTAGGCTGGTGGAAATTCTGGCAATGATCAAGGACTGGGAGCTAGCAGATGCAAAAAGTCAGCATACTACTGAGAATGTGGAGCTTCAAAATGCTTATGAGAATATGTATCTTGATGATGAAATTGATGTAAACCCTTGA
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| Protein seq | MDDDPTSVNYELRTMGMRGDDDDDVEEDRVEVFGNTSDIPIHVNVDDDDPPVDDSGNGTPTGSSATCTNKKTKTSKVWDDFEELYETTNGNRVRVSAKCNYCHKTLSARSSAGTGHLLRHIKSCKPRKLGSNALPQSMLRFSADGSVIPWEYSPEDARFELCRLIAREDLPISFGQSPAFVNYIKAAHNPRFVPVSRQTTTRDFYKLFKDRRSVIIDRLNSASSIALTSDIWSGHAKEDYLSVVAHFVNSDWQLEKRVLGLRLIDESHTGANIAERVIAVAEEYGITDKVFSITLDNASANSKAMITLTPALFGYIGDLFLHQRCACHIINLIVKAGLDKFKPMLNDIRAAISFLNASNQRIATYKNVCIAAGYRPRMFGLDMDVRWNSTYLMLKHLIPHREPFTVFISTQHPFVNDHPLLTDLHWACAESVLCFLEQFYDSTVVLSGVYYPTSPLIMHHILEIAGHLNTYGNVQNIANVVGPMKTKFMNYWSKIPILYSFAFILDPRAKIRGFSKVLQIMAQLIGDDYSAYLTTVRASLFDTFAKYERKFGSVRLHSSTIPGPSTGKKRTAWGKIFGSVVAVGLGAGNAGASPGAGNAGASPGAGLGAGNAGASPGAGLGAGSLSRMTSATALLQAASSTANLNSSELSAYLDSDTVNQYDDDFNILSWWQQHKLTYPVLSILAKDVMTVPVSTISSESTFSLTGRIIEDRRRRLNPRLVEILAMIKDWELADAKSQHTTENVELQNAYENMYLDDEIDVNP |
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| Function | Zinc finger BED domain-containing protein RICESLEEPER 2 [UniProtKB/Swiss-Prot:Q6AVI0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g15380 | LOC_Os01g15380.1 | Chr01 | 8618914 | 8621205 | - | MSU_osa1r7 | ||
| CDS seq | ATGGACGACGATCCTACCTCTGTCAACTACGAGTTGAGGACTATGGGGATGCGCGGTGATGACGATGATGATGTGGAGGAGGATCGTGTGGAGGTGTTCGGCAATACCTCCGACATCCCGATCCATGTGAATGTCGATGACGACGACCCGCCGGTCGACGACAGTGGCAATGGGACGCCGACTGGCTCTAGTGCGACTTGTACCAACAAGAAGACCAAAACCTCCAAGGTATGGGATGACTTTGAGGAACTTTATGAAACGACCAATGGTAATAGGGTTCGAGTCTCTGCTAAATGCAATTACTGTCATAAAACTTTGAGTGCTCGTTCTTCTGCTGGCACTGGACATTTGCTTAGGCATATTAAGTCATGCAAACCTAGAAAGCTTGGGTCTAATGCTTTGCCTCAGTCCATGCTTAGATTTAGTGCAGATGGTTCTGTTATTCCATGGGAATATAGTCCTGAAGATGCTAGGTTTGAATTGTGTAGATTGATTGCTAGAGAGGATCTTCCAATCAGTTTTGGTCAATCTCCTGCTTTTGTGAACTATATTAAGGCTGCTCATAACCCTAGATTTGTTCCTGTCTCTAGACAAACTACTACCAGAGATTTTTATAAGTTGTTTAAGGATCGTCGTTCTGTTATTATTGATCGTCTCAATTCTGCTAGCTCTATTGCTTTGACATCTGATATATGGTCTGGTCATGCTAAGGAAGATTATTTGAGTGTTGTAGCTCACTTTGTTAATTCTGATTGGCAATTAGAAAAGAGGGTCTTGGGTCTTAGGCTTATTGATGAGTCACATACTGGTGCTAATATTGCTGAGCGTGTGATTGCTGTTGCTGAAGAATATGGTATTACTGATAAGGTTTTCTCTATTACATTAGACAATGCTTCTGCTAATTCTAAAGCTATGATCACCCTTACTCCTGCTCTGTTTGGTTATATTGGTGATTTATTTTTGCATCAACGCTGTGCATGTCATATCATCAATTTGATTGTTAAGGCTGGACTTGACAAGTTCAAGCCCATGCTAAATGACATTAGAGCTGCCATTTCATTCTTGAATGCATCTAATCAGCGCATTGCTACATATAAAAATGTTTGCATTGCTGCGGGTTATCGTCCTCGTATGTTTGGTTTGGACATGGATGTTAGATGGAATTCAACTTATCTAATGCTTAAGCATCTCATACCACATAGGGAACCATTCACAGTATTTATTAGTACACAACATCCTTTTGTTAATGACCATCCATTACTCACAGACTTACATTGGGCATGTGCTGAATCTGTTTTGTGTTTCCTTGAACAATTTTATGATTCAACTGTTGTTTTGTCTGGTGTTTATTATCCAACATCTCCATTAATCATGCATCACATTTTAGAGATTGCTGGACATCTAAACACATATGGCAATGTTCAAAACATTGCAAATGTTGTTGGTCCCATGAAAACTAAGTTTATGAACTATTGGTCTAAAATTCCAATTCTTTATTCATTTGCATTTATCTTGGACCCTAGGGCCAAGATTAGGGGGTTTAGTAAAGTGCTTCAGATTATGGCTCAACTCATTGGTGATGATTATTCTGCTTATTTAACAACTGTTAGAGCTTCATTGTTTGATACTTTTGCTAAGTATGAAAGAAAGTTTGGTTCTGTTAGATTGCATAGTTCCACTATTCCAGGCCCTTCCACTGGTAAGAAAAGGACTGCATGGGGGAAGATTTTTGGTTCTGTTGTTGCTGTTGGGCTTGGTGCTGGTAATGCAGGTGCCAGTCCAGGTGCTGGTAATGCTGGTGCCAGTCCAGGTGCTGGGCTTGGTGCTGGTAATGCTGGTGCCAGTCCAGGTGCTGGGCTTGGTGCTGGTTCATTATCCAGGATGACATCTGCTACTGCTTTGCTTCAGGCAGCTTCTTCAACTGCTAATCTCAATTCTTCTGAACTGTCTGCATATCTTGACAGTGACACTGTCAACCAATATGATGATGACTTCAATATCCTTAGTTGGTGGCAACAGCACAAACTAACTTATCCTGTTCTTTCAATCTTAGCTAAAGATGTTATGACTGTTCCTGTTTCTACTATATCGTCCGAGTCTACTTTTAGCTTAACTGGCAGGATCATCGAGGACCGTCGGCGGCGTCTAAACCCTAGGCTGGTGGAAATTCTGGCAATGATCAAGGACTGGGAGCTAGCAGATGCAAAAAGTCAGCATACTACTGAGAATGTGGAGCTTCAAAATGCTTATGAGAATATGTATCTTGATGATGAAATTGATGTAAACCCTTGA
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| Protein seq | MDDDPTSVNYELRTMGMRGDDDDDVEEDRVEVFGNTSDIPIHVNVDDDDPPVDDSGNGTPTGSSATCTNKKTKTSKVWDDFEELYETTNGNRVRVSAKCNYCHKTLSARSSAGTGHLLRHIKSCKPRKLGSNALPQSMLRFSADGSVIPWEYSPEDARFELCRLIAREDLPISFGQSPAFVNYIKAAHNPRFVPVSRQTTTRDFYKLFKDRRSVIIDRLNSASSIALTSDIWSGHAKEDYLSVVAHFVNSDWQLEKRVLGLRLIDESHTGANIAERVIAVAEEYGITDKVFSITLDNASANSKAMITLTPALFGYIGDLFLHQRCACHIINLIVKAGLDKFKPMLNDIRAAISFLNASNQRIATYKNVCIAAGYRPRMFGLDMDVRWNSTYLMLKHLIPHREPFTVFISTQHPFVNDHPLLTDLHWACAESVLCFLEQFYDSTVVLSGVYYPTSPLIMHHILEIAGHLNTYGNVQNIANVVGPMKTKFMNYWSKIPILYSFAFILDPRAKIRGFSKVLQIMAQLIGDDYSAYLTTVRASLFDTFAKYERKFGSVRLHSSTIPGPSTGKKRTAWGKIFGSVVAVGLGAGNAGASPGAGNAGASPGAGLGAGNAGASPGAGLGAGSLSRMTSATALLQAASSTANLNSSELSAYLDSDTVNQYDDDFNILSWWQQHKLTYPVLSILAKDVMTVPVSTISSESTFSLTGRIIEDRRRRLNPRLVEILAMIKDWELADAKSQHTTENVELQNAYENMYLDDEIDVNP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0111400 | SBH | 0.922336 | 0.672252 | 1.477524 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g07440 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0111400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0000890 | SBH | 0.457202 | 4.093319 | 1.445688 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0000880 | SBH | 0.173710 | 1.870566 | 0.685708 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0000880 | SBH | 0.788762 | 3.453163 | 0.475671 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0000890 | SBH | 0.215980 | 0.089919 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0000870 | SBH | 3.335243 | 2.892036 | 3.313047 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0144100 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0000860 | SBH | 0.155127 | 0.245903 | 0.500188 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0142600 | RBH | 0 | 0.0116765 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0000910 | SBH | 0.346050 | 5.894956 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0000880 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0000880 | SBH | 0.625137 | 0.186579 | 0.359247 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0000860 | SBH | 0.184398 | 4.681217 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G000870 | SBH | 0.305729 | 1.735541 | 0.641294 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0000830 | SBH | 1.112452 | 7.723816 | 3.167970 |
