Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_01g0000880 | OGI:01001840 | 15/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr01:612678-615865 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cagagacgagccggCTgggtgagccgctccgattcagggagaaaaccaaaccctagctcgctggctggctggctggatccCaatctcccatcggcgccggcgccgcggctcgctCccccctgtgctgcctgtggcggtgggcacgtgcagtctgcgctgcgtcagctctcgccgcggctcggctctccggcgactccttcggctcgctccccaaggtacaccccacacccgctgctgctttctccgatctgcaccgcaattaggagtagtagaaagaaccaaacaatcaatcaatacgcgaatcacatgctcacactgatctctctgctaaatcaacacaccaccttgtcaaaagatttgcaccatcatcagattggatttgcacaagtatgtttgtttcaattcttgctgacactctctactgtaacttgcaacgccacagagaggatcgatatggggaacgcaactctcactgatatgactctcTtgcccagcgtagaccctgacgacgcgctgtccgggatggcggccacctcctctgCccctgcccagggagccaagCccaagaagaagaccatgaagtccctctacctccagTtcttcgatactgCccccgatggcAagtcccgcgtctgcaagctctgcaagaagagctactgcatgaccactgccaccggtatacatatacatctgttactcttaacgcccatccaatccaattgaaacgattttactttattatactctgcaatacaatacaagcactttactgtaacaatgaagggcgttttgcaaattctgtctccaagaagattcaatctttctttctgacatatgcccacaactctagttcagtttcagtcagtagataatgtcagtattagttgccttattttcaccctttccaacTgtcaagtctgaACaccacattcagtaatatgctacattgttgtgtgcaggaaatcTtgggaagcatcttaataaccgccaccctggttactgccaactttctgagggtgaagcaactcaaagtacaacgcctaccagcatggtttctcgagccaaaagatctcaacccctagcgcgaactcgatcacaagctcaatctcagtCccaagttcaacctcaatcccaagttcaacatcaacctcaacctcaaactgtatctaaagttcgtcatcaacctaaagcgaaaccagcaattgatattgaCcatgtcaactggttacttctgaggtggcttatcagctcctcccttccaacttccaccctcgaagatagtatgcttatcgacagttgcaggtatttgaacccgcctgtccagctatggccaaaagAaaaggctcatgaaattgtccttcaagtgttcagaagcatgaaggaggatgttaaggcatctctgcagtgcgttagctctcggttctccattactcttgacttttggacttcttatgaacagattgtgtacttgtccgtcaagtgttactggattgatgaaggctgggccttgcggaaagttttgcttgatgtccgccgtatcccatacccatgcactggccctgagattctgcaagttctaatgaatgtgctgcacgagtttaacattgattcaaagatccttgcttgcacacataacaacagccaacatgcaatccatgcttgtcatgagctcaggcaggagcttgagtcccgtaaacttcctttctgttacatcccctgtgctgctcggatgctcaagattatcatAaaagatggcctggaaaatgtgAggccagtattgtccaagatccgtgaatttgttctcgagaccaattcaaaccaggacatgatggaagattttatgcactggactgaagtttatcaagaaggctcatggaaacttccatttgaccattcatcAaactggagtggtgattacaatatgcttgatgtggtaaagAAggtaccatacagctcatacttcgtataattcattttccatcatgctctatgtcTttaatgcccatttaaatgaaaACaaaacctttttcatccaggcccctaatgcaatggataacaccatcaagaagtttgaaggggtatttggaccaagggactgggttctgagttccacagagaagtcagccgtcaactcattgcactcgtaccttgagcccttctacaaaactaccaccaacctttgtacttgcaaaataccaacagttgggctggtgttcttctttatggaccatgttattgaattgatcaatgtctgccatgatagcacccgtcaggattggctcaagaaaatcgccagtgacatgtctgagacagctcataacttcgcatctcaagcttacaacatctacacgttcacggcagcaattcttgatccaagaatcaaaggagagcttatccctgaaacccttaactcaactagcaacttggaggatgcaaggaaccaatttgtcagggactacagtagcacctttgaagctgttgggaatggctacaacacccaagacaccactgacggcggtgatgcattttcctttgctgaagagattgtccgtaaacgccgtcgtgtgagtatgatcactgctgctgatgagctttctcagtatcttgctgagccccctgcaccaatttccactgatgcccttgaatggtggaagggtcactcctcccgttacccacggctctctttgatggctcgtgattttttggcgatccaagggacctcattagaccctgaagaattgttcacgagcaaaggtgacagcatgcgcaAGCagcactactgccttcctctcagtagcattcaagctacaatgtgcgtaaaatcgtggatgcagagtgggtaccagttcaattttcaatcaaccattattgatttcgagagattggtcgaatctgctgttgctcctgatgctgtagatgctcctgagttttcatgaatgaatgaccgtaaattcagaatctagatcagttttcactgtctttgatgtttatgtttgtagtggtctctaacaaaatcccagagtgagaaccatggagagtagcttgtgttagaatcatgacattaatgaatttagctcaatgtctccgggcagttgttttaatattgtagcgttattatgttggtacttccgtgggtgaccaaaactaaagctaaatgtatcaggtaatattgattgtagtttgtccag
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| CDS seq | atggggaacgcaactctcactgatatgactctcTtgcccagcgtagaccctgacgacgcgctgtccgggatggcggccacctcctctgCccctgcccagggagccaagCccaagaagaagaccatgaagtccctctacctccagTtcttcgatactgCccccgatggcAagtcccgcgtctgcaagctctgcaagaagagctactgcatgaccactgccaccggaaatcTtgggaagcatcttaataaccgccaccctggttactgccaactttctgagggtgaagcaactcaaagtacaacgcctaccagcatggtttctcgagccaaaagatctcaacccctagcgcgaactcgatcacaagctcaatctcagtCccaagttcaacctcaatcccaagttcaacatcaacctcaacctcaaactgtatctaaagttcgtcatcaacctaaagcgaaaccagcaattgatattgaCcatgtcaactggttacttctgaggtggcttatcagctcctcccttccaacttccaccctcgaagatagtatgcttatcgacagttgcaggtatttgaacccgcctgtccagctatggccaaaagAaaaggctcatgaaattgtccttcaagtgttcagaagcatgaaggaggatgttaaggcatctctgcagtgcgttagctctcggttctccattactcttgacttttggacttcttatgaacagattgtgtacttgtccgtcaagtgttactggattgatgaaggctgggccttgcggaaagttttgcttgatgtccgccgtatcccatacccatgcactggccctgagattctgcaagttctaatgaatgtgctgcacgagtttaacattgattcaaagatccttgcttgcacacataacaacagccaacatgcaatccatgcttgtcatgagctcaggcaggagcttgagtcccgtaaacttcctttctgttacatcccctgtgctgctcggatgctcaagattatcatAaaagatggcctggaaaatgtgAggccagtattgtccaagatccgtgaatttgttctcgagaccaattcaaaccaggacatgatggaagattttatgcactggactgaagtttatcaagaaggctcatggaaacttccatttgaccattcatcAaactggagtggtgattacaatatgcttgatgtggtaaagAAggcccctaatgcaatggataacaccatcaagaagtttgaaggggtatttggaccaagggactgggttctgagttccacagagaagtcagccgtcaactcattgcactcgtaccttgagcccttctacaaaactaccaccaacctttgtacttgcaaaataccaacagttgggctggtgttcttctttatggaccatgttattgaattgatcaatgtctgccatgatagcacccgtcaggattggctcaagaaaatcgccagtgacatgtctgagacagctcataacttcgcatctcaagcttacaacatctacacgttcacggcagcaattcttgatccaagaatcaaaggagagcttatccctgaaacccttaactcaactagcaacttggaggatgcaaggaaccaatttgtcagggactacagtagcacctttgaagctgttgggaatggctacaacacccaagacaccactgacggcggtgatgcattttcctttgctgaagagattgtccgtaaacgccgtcgtgtgagtatgatcactgctgctgatgagctttctcagtatcttgctgagccccctgcaccaatttccactgatgcccttgaatggtggaagggtcactcctcccgttacccacggctctctttgatggctcgtgattttttggcgatccaagggacctcattagaccctgaagaattgttcacgagcaaaggtgacagcatgcgcaAGCagcactactgccttcctctcagtagcattcaagctacaatgtgcgtaaaatcgtggatgcagagtgggtaccagttcaattttcaatcaaccattattgatttcgagagattggtcgaatctgctgttgctcctgatgctgtagatgctcctgagttttcatga
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| Protein seq | MGNATLTDMTLLPSVDPDDALSGMAATSSAPAQGAKPKKKTMKSLYLQFFDTAPDGKSRVCKLCKKSYCMTTATGNLGKHLNNRHPGYCQLSEGEATQSTTPTSMVSRAKRSQPLARTRSQAQSQSQVQPQSQVQHQPQPQTVSKVRHQPKAKPAIDIDHVNWLLLRWLISSSLPTSTLEDSMLIDSCRYLNPPVQLWPKEKAHEIVLQVFRSMKEDVKASLQCVSSRFSITLDFWTSYEQIVYLSVKCYWIDEGWALRKVLLDVRRIPYPCTGPEILQVLMNVLHEFNIDSKILACTHNNSQHAIHACHELRQELESRKLPFCYIPCAARMLKIIIKDGLENVRPVLSKIREFVLETNSNQDMMEDFMHWTEVYQEGSWKLPFDHSSNWSGDYNMLDVVKKAPNAMDNTIKKFEGVFGPRDWVLSSTEKSAVNSLHSYLEPFYKTTTNLCTCKIPTVGLVFFFMDHVIELINVCHDSTRQDWLKKIASDMSETAHNFASQAYNIYTFTAAILDPRIKGELIPETLNSTSNLEDARNQFVRDYSSTFEAVGNGYNTQDTTDGGDAFSFAEEIVRKRRRVSMITAADELSQYLAEPPAPISTDALEWWKGHSSRYPRLSLMARDFLAIQGTSLDPEELFTSKGDSMRKQHYCLPLSSIQATMCVKSWMQSGYQFNFQSTIIDFERLVESAVAPDAVDAPEFS |
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| Function | Putative AC transposase [UniProtKB/Swiss-Prot:P08770] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_01g0000880 | OsGoSa_01g0000880.02 | Chr01 | 612703 | 615865 | + | NAM | ||
| CDS seq | atggggaacgcaactctcactgatatgactctcTtgcccagcgtagaccctgacgacgcgctgtccgggatggcggccacctcctctgCccctgcccagggagccaagCccaagaagaagaccatgaagtccctctacctccagTtcttcgatactgCccccgatggcAagtcccgcgtctgcaagctctgcaagaagagctactgcatgaccactgccaccggaaatcTtgggaagcatcttaataaccgccaccctggttactgccaactttctgagggtgaagcaactcaaagtacaacgcctaccagcatggtttctcgagccaaaagatctcaacccctagcgcgaactcgatcacaagctcaatctcagtCccaagttcaacctcaatcccaagttcaacatcaacctcaacctcaaactgtatctaaagttcgtcatcaacctaaagcgaaaccagcaattgatattgaCcatgtcaactggttacttctgaggtggcttatcagctcctcccttccaacttccaccctcgaagatagtatgcttatcgacagttgcaggtatttgaacccgcctgtccagctatggccaaaagAaaaggctcatgaaattgtccttcaagtgttcagaagcatgaaggaggatgttaaggcatctctgcagtgcgttagctctcggttctccattactcttgacttttggacttcttatgaacagattgtgtacttgtccgtcaagtgttactggattgatgaaggctgggccttgcggaaagttttgcttgatgtccgccgtatcccatacccatgcactggccctgagattctgcaagttctaatgaatgtgctgcacgagtttaacattgattcaaagatccttgcttgcacacataacaacagccaacatgcaatccatgcttgtcatgagctcaggcaggagcttgagtcccgtaaacttcctttctgttacatcccctgtgctgctcggatgctcaagattatcatAaaagatggcctggaaaatgtgAggccagtattgtccaagatccgtgaatttgttctcgagaccaattcaaaccaggacatgatggaagattttatgcactggactgaagtttatcaagaaggctcatggaaacttccatttgaccattcatcAaactggagtggtgattacaatatgcttgatgtggtaaagAAggcccctaatgcaatggataacaccatcaagaagtttgaaggggtatttggaccaagggactgggttctgagttccacagagaagtcagccgtcaactcattgcactcgtaccttgagcccttctacaaaactaccaccaacctttgtacttgcaaaataccaacagttgggctggtgttcttctttatggaccatgttattgaattgatcaatgtctgccatgatagcacccgtcaggattggctcaagaaaatcgccagtgacatgtctgagacagctcataacttcgcatctcaagcttacaacatctacacgttcacggcagcaattcttgatccaagaatcaaaggagagcttatccctgaaacccttaactcaactagcaacttggaggatgcaaggaaccaatttgtcagggactacagtagcacctttgaagctgttgggaatggctacaacacccaagacaccactgacggcggtgatgcattttcctttgctgaagagattgtccgtaaacgccgtcgtgtgagtatgatcactgctgctgatgagctttctcagtatcttgctgagccccctgcaccaatttccactgatgcccttgaatggtggaagggtcactcctcccgttacccacggctctctttgatggctcgtgattttttggcgatccaagggacctcattagaccctgaagaattgttcacgagcaaaggtgacagcatgcgcaAGCagcactactgccttcctctcagtagcattcaagctacaatgtgcgtaaaatcgtggatgcagagtgggtaccagttcaattttcaatcaaccattattgatttcgagagattggtcgaatctgctgttgctcctgatgctgtagatgctcctgagttttcatga
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| Protein seq | MGNATLTDMTLLPSVDPDDALSGMAATSSAPAQGAKPKKKTMKSLYLQFFDTAPDGKSRVCKLCKKSYCMTTATGNLGKHLNNRHPGYCQLSEGEATQSTTPTSMVSRAKRSQPLARTRSQAQSQSQVQPQSQVQHQPQPQTVSKVRHQPKAKPAIDIDHVNWLLLRWLISSSLPTSTLEDSMLIDSCRYLNPPVQLWPKEKAHEIVLQVFRSMKEDVKASLQCVSSRFSITLDFWTSYEQIVYLSVKCYWIDEGWALRKVLLDVRRIPYPCTGPEILQVLMNVLHEFNIDSKILACTHNNSQHAIHACHELRQELESRKLPFCYIPCAARMLKIIIKDGLENVRPVLSKIREFVLETNSNQDMMEDFMHWTEVYQEGSWKLPFDHSSNWSGDYNMLDVVKKAPNAMDNTIKKFEGVFGPRDWVLSSTEKSAVNSLHSYLEPFYKTTTNLCTCKIPTVGLVFFFMDHVIELINVCHDSTRQDWLKKIASDMSETAHNFASQAYNIYTFTAAILDPRIKGELIPETLNSTSNLEDARNQFVRDYSSTFEAVGNGYNTQDTTDGGDAFSFAEEIVRKRRRVSMITAADELSQYLAEPPAPISTDALEWWKGHSSRYPRLSLMARDFLAIQGTSLDPEELFTSKGDSMRKQHYCLPLSSIQATMCVKSWMQSGYQFNFQSTIIDFERLVESAVAPDAVDAPEFS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_01g0000880 | OsGoSa_01g0000880.01 | Chr01 | 612678 | 615865 | + | NAM | ||
| CDS seq | atggcggccacctcctctgCccctgcccagggagccaagCccaagaagaagaccatgaagtccctctacctccagTtcttcgatactgCccccgatggcAagtcccgcgtctgcaagctctgcaagaagagctactgcatgaccactgccaccggaaatcTtgggaagcatcttaataaccgccaccctggttactgccaactttctgagggtgaagcaactcaaagtacaacgcctaccagcatggtttctcgagccaaaagatctcaacccctagcgcgaactcgatcacaagctcaatctcagtCccaagttcaacctcaatcccaagttcaacatcaacctcaacctcaaactgtatctaaagttcgtcatcaacctaaagcgaaaccagcaattgatattgaCcatgtcaactggttacttctgaggtggcttatcagctcctcccttccaacttccaccctcgaagatagtatgcttatcgacagttgcaggtatttgaacccgcctgtccagctatggccaaaagAaaaggctcatgaaattgtccttcaagtgttcagaagcatgaaggaggatgttaaggcatctctgcagtgcgttagctctcggttctccattactcttgacttttggacttcttatgaacagattgtgtacttgtccgtcaagtgttactggattgatgaaggctgggccttgcggaaagttttgcttgatgtccgccgtatcccatacccatgcactggccctgagattctgcaagttctaatgaatgtgctgcacgagtttaacattgattcaaagatccttgcttgcacacataacaacagccaacatgcaatccatgcttgtcatgagctcaggcaggagcttgagtcccgtaaacttcctttctgttacatcccctgtgctgctcggatgctcaagattatcatAaaagatggcctggaaaatgtgAggccagtattgtccaagatccgtgaatttgttctcgagaccaattcaaaccaggacatgatggaagattttatgcactggactgaagtttatcaagaaggctcatggaaacttccatttgaccattcatcAaactggagtggtgattacaatatgcttgatgtggtaaagAAggcccctaatgcaatggataacaccatcaagaagtttgaaggggtatttggaccaagggactgggttctgagttccacagagaagtcagccgtcaactcattgcactcgtaccttgagcccttctacaaaactaccaccaacctttgtacttgcaaaataccaacagttgggctggtgttcttctttatggaccatgttattgaattgatcaatgtctgccatgatagcacccgtcaggattggctcaagaaaatcgccagtgacatgtctgagacagctcataacttcgcatctcaagcttacaacatctacacgttcacggcagcaattcttgatccaagaatcaaaggagagcttatccctgaaacccttaactcaactagcaacttggaggatgcaaggaaccaatttgtcagggactacagtagcacctttgaagctgttgggaatggctacaacacccaagacaccactgacggcggtgatgcattttcctttgctgaagagattgtccgtaaacgccgtcgtgtgagtatgatcactgctgctgatgagctttctcagtatcttgctgagccccctgcaccaatttccactgatgcccttgaatggtggaagggtcactcctcccgttacccacggctctctttgatggctcgtgattttttggcgatccaagggacctcattagaccctgaagaattgttcacgagcaaaggtgacagcatgcgcaAGCagcactactgccttcctctcagtagcattcaagctacaatgtgcgtaaaatcgtggatgcagagtgggtaccagttcaattttcaatcaaccattattgatttcgagagattggtcgaatctgctgttgctcctgatgctgtagatgctcctgagttttcatga
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| Protein seq | MAATSSAPAQGAKPKKKTMKSLYLQFFDTAPDGKSRVCKLCKKSYCMTTATGNLGKHLNNRHPGYCQLSEGEATQSTTPTSMVSRAKRSQPLARTRSQAQSQSQVQPQSQVQHQPQPQTVSKVRHQPKAKPAIDIDHVNWLLLRWLISSSLPTSTLEDSMLIDSCRYLNPPVQLWPKEKAHEIVLQVFRSMKEDVKASLQCVSSRFSITLDFWTSYEQIVYLSVKCYWIDEGWALRKVLLDVRRIPYPCTGPEILQVLMNVLHEFNIDSKILACTHNNSQHAIHACHELRQELESRKLPFCYIPCAARMLKIIIKDGLENVRPVLSKIREFVLETNSNQDMMEDFMHWTEVYQEGSWKLPFDHSSNWSGDYNMLDVVKKAPNAMDNTIKKFEGVFGPRDWVLSSTEKSAVNSLHSYLEPFYKTTTNLCTCKIPTVGLVFFFMDHVIELINVCHDSTRQDWLKKIASDMSETAHNFASQAYNIYTFTAAILDPRIKGELIPETLNSTSNLEDARNQFVRDYSSTFEAVGNGYNTQDTTDGGDAFSFAEEIVRKRRRVSMITAADELSQYLAEPPAPISTDALEWWKGHSSRYPRLSLMARDFLAIQGTSLDPEELFTSKGDSMRKQHYCLPLSSIQATMCVKSWMQSGYQFNFQSTIIDFERLVESAVAPDAVDAPEFS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr01 | 612892 | 613177 | + | OsGoSa_01g0000880.02 | OsGoSa_01g0000880.02,OsGoSa_01g0000880.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0111400 | RBH | 0.922336 | 0.672252 | 1.477524 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g02100 | RBH | 0.639625 | 0.390587 | 0.383594 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0111400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0000890 | RBH | 0.457202 | 4.093319 | 1.445688 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0000880 | RBH | 0.173710 | 1.870566 | 0.685708 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0000880 | RBH | 0.788762 | 3.453163 | 0.475671 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0000890 | RBH | 0.215980 | 0.089919 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0000870 | RBH | 3.335243 | 2.892036 | 3.313047 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0000860 | RBH | 0.155127 | 0.245903 | 0.500188 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0011300 | RBH | 2.6827255 | 7.3593845 | 4.262321 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0000880 | RBH | 0.083400 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0000910 | RBH | 0.346050 | 5.894956 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0000880 | RBH | 0.625137 | 0.186579 | 0.359247 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0000860 | RBH | 0.184398 | 4.681217 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G000870 | RBH | 0.305729 | 1.735541 | 0.641294 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0000830 | RBH | 1.112452 | 7.723816 | 3.167970 |
