Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g53000 | OGI:04092830 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:31565144-31566271 | ||||||||
| Gene Symbol | RGAb | ||||||||||
| DNA seq | ATGAAGGTGGCCAAGCTTTCGCAGTCTCCGCGCCACCGCAGTCTCCGCGCTGCACTGTGTGTACTGCCACTTTCGATGAGATTGACTCCATCTCCGCTAGCGCTAAAACAGCTGTTGAAAATTCCATCTAATATCATCCATTCTCTAAGAGAGCTAGTTATTTCTAACTGTCCTGATCTGGAGTTCGGTGGAGAAGAGGGAGCCCTCCGAGGATACACCTCTCTTAAGTCCATTAAAGTTCAGGGTTGCCCCAAACTGATACCGTTGTTGGTGAGTGGTAAGATGGAGGTTGGATTGCTGCCACCGTCTCTAGAATGCTTATGTATTGATATGGGTCCTGAGCTGTCTACTGTGTGGGATCTCAAACTGCAGGAGCTTGAACAGGGCAGTAATCAGGTTCCACCGCCACCTCCGTCACTTGACACATTCCTTATCACGAATCTCACAGACAAGGTACAGTCTCGTCTGCTGTCCTTCCTCCCTACCATCACAAATTTAGTCATATCAGAAAGTCCAGAGTTGACATCTCTGCAGCTGGGATACTCCAAGGCACTGAAAGAGTTGGAAATTGTAGACTGCAAGTCACTTGCTTCAGTTGAGGGCTTTGGATCCTTGACAAACCTTAGGTTCTTGACAGTATATGAATCGCCCAGCATGCCTCAATGTTTTGAGATTCTATCACAACAACATGGGGCCTCTGAGATCTTGTCCCGACTGGAAAATCTTCAGATCAGTGATGGCTTTATCCTTACTGTTTCCCTCTGCAAACAGCTCACGTCTCTGAGAGATCTATTCTTCTGGCCTGAACGAAGCAAGCCTGATGCGACGATGATGGGTCTGACAGAGGAACAAGAGAGAGCACTCCAGCTTCTGACATCCCTCGAACGTCTCAACTTTTGGGGGTTGCCGAATCTCTTGTCCCTTCCTGCAAATCTAGCAAGCCTGACCTCCCTCGAGTGGTTAGATATCTCAGACTGCCCCCGCATGGCAAGGCTGCCAGAGATGGGCCTTCCACCATCGTTGAGGAGATTATCTTTATGCCGTTGCAGCGACGACCTAAGTATGCAGTGCAGAATGGTAGCAACGGAGAAGCTACAGGTCGAGATTGATGACGAAACTATTGATTAA
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| CDS seq | ATGAAGGTGGCCAAGCTTTCGCAGTCTCCGCGCCACCGCAGTCTCCGCGCTGCACTGTGTGTACTGCCACTTTCGATGAGATTGACTCCATCTCCGCTAGCGCTAAAACAGCTGTTGAAAATTCCATCTAATATCATCCATTCTCTAAGAGAGCTAGTTATTTCTAACTGTCCTGATCTGGAGTTCGGTGGAGAAGAGGGAGCCCTCCGAGGATACACCTCTCTTAAGTCCATTAAAGTTCAGGGTTGCCCCAAACTGATACCGTTGTTGGTGAGTGGTAAGATGGAGGTTGGATTGCTGCCACCGTCTCTAGAATGCTTATGTATTGATATGGGTCCTGAGCTGTCTACTGTGTGGGATCTCAAACTGCAGGAGCTTGAACAGGGCAGTAATCAGGTTCCACCGCCACCTCCGTCACTTGACACATTCCTTATCACGAATCTCACAGACAAGGTACAGTCTCGTCTGCTGTCCTTCCTCCCTACCATCACAAATTTAGTCATATCAGAAAGTCCAGAGTTGACATCTCTGCAGCTGGGATACTCCAAGGCACTGAAAGAGTTGGAAATTGTAGACTGCAAGTCACTTGCTTCAGTTGAGGGCTTTGGATCCTTGACAAACCTTAGGTTCTTGACAGTATATGAATCGCCCAGCATGCCTCAATGTTTTGAGATTCTATCACAACAACATGGGGCCTCTGAGATCTTGTCCCGACTGGAAAATCTTCAGATCAGTGATGGCTTTATCCTTACTGTTTCCCTCTGCAAACAGCTCACGTCTCTGAGAGATCTATTCTTCTGGCCTGAACGAAGCAAGCCTGATGCGACGATGATGGGTCTGACAGAGGAACAAGAGAGAGCACTCCAGCTTCTGACATCCCTCGAACGTCTCAACTTTTGGGGGTTGCCGAATCTCTTGTCCCTTCCTGCAAATCTAGCAAGCCTGACCTCCCTCGAGTGGTTAGATATCTCAGACTGCCCCCGCATGGCAAGGCTGCCAGAGATGGGCCTTCCACCATCGTTGAGGAGATTATCTTTATGCCGTTGCAGCGACGACCTAAGTATGCAGTGCAGAATGGTAGCAACGGAGAAGCTACAGGTCGAGATTGATGACGAAACTATTGATTAA
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| Protein seq | MKVAKLSQSPRHRSLRAALCVLPLSMRLTPSPLALKQLLKIPSNIIHSLRELVISNCPDLEFGGEEGALRGYTSLKSIKVQGCPKLIPLLVSGKMEVGLLPPSLECLCIDMGPELSTVWDLKLQELEQGSNQVPPPPPSLDTFLITNLTDKVQSRLLSFLPTITNLVISESPELTSLQLGYSKALKELEIVDCKSLASVEGFGSLTNLRFLTVYESPSMPQCFEILSQQHGASEILSRLENLQISDGFILTVSLCKQLTSLRDLFFWPERSKPDATMMGLTEEQERALQLLTSLERLNFWGLPNLLSLPANLASLTSLEWLDISDCPRMARLPEMGLPPSLRRLSLCRCSDDLSMQCRMVATEKLQVEIDDETID |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g53000 | LOC_Os04g53000.1 | Chr04 | 31565144 | 31566271 | + | MSU_osa1r7 | ||
| CDS seq | ATGAAGGTGGCCAAGCTTTCGCAGTCTCCGCGCCACCGCAGTCTCCGCGCTGCACTGTGTGTACTGCCACTTTCGATGAGATTGACTCCATCTCCGCTAGCGCTAAAACAGCTGTTGAAAATTCCATCTAATATCATCCATTCTCTAAGAGAGCTAGTTATTTCTAACTGTCCTGATCTGGAGTTCGGTGGAGAAGAGGGAGCCCTCCGAGGATACACCTCTCTTAAGTCCATTAAAGTTCAGGGTTGCCCCAAACTGATACCGTTGTTGGTGAGTGGTAAGATGGAGGTTGGATTGCTGCCACCGTCTCTAGAATGCTTATGTATTGATATGGGTCCTGAGCTGTCTACTGTGTGGGATCTCAAACTGCAGGAGCTTGAACAGGGCAGTAATCAGGTTCCACCGCCACCTCCGTCACTTGACACATTCCTTATCACGAATCTCACAGACAAGGTACAGTCTCGTCTGCTGTCCTTCCTCCCTACCATCACAAATTTAGTCATATCAGAAAGTCCAGAGTTGACATCTCTGCAGCTGGGATACTCCAAGGCACTGAAAGAGTTGGAAATTGTAGACTGCAAGTCACTTGCTTCAGTTGAGGGCTTTGGATCCTTGACAAACCTTAGGTTCTTGACAGTATATGAATCGCCCAGCATGCCTCAATGTTTTGAGATTCTATCACAACAACATGGGGCCTCTGAGATCTTGTCCCGACTGGAAAATCTTCAGATCAGTGATGGCTTTATCCTTACTGTTTCCCTCTGCAAACAGCTCACGTCTCTGAGAGATCTATTCTTCTGGCCTGAACGAAGCAAGCCTGATGCGACGATGATGGGTCTGACAGAGGAACAAGAGAGAGCACTCCAGCTTCTGACATCCCTCGAACGTCTCAACTTTTGGGGGTTGCCGAATCTCTTGTCCCTTCCTGCAAATCTAGCAAGCCTGACCTCCCTCGAGTGGTTAGATATCTCAGACTGCCCCCGCATGGCAAGGCTGCCAGAGATGGGCCTTCCACCATCGTTGAGGAGATTATCTTTATGCCGTTGCAGCGACGACCTAAGTATGCAGTGCAGAATGGTAGCAACGGAGAAGCTACAGGTCGAGATTGATGACGAAACTATTGATTAA
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| Protein seq | MKVAKLSQSPRHRSLRAALCVLPLSMRLTPSPLALKQLLKIPSNIIHSLRELVISNCPDLEFGGEEGALRGYTSLKSIKVQGCPKLIPLLVSGKMEVGLLPPSLECLCIDMGPELSTVWDLKLQELEQGSNQVPPPPPSLDTFLITNLTDKVQSRLLSFLPTITNLVISESPELTSLQLGYSKALKELEIVDCKSLASVEGFGSLTNLRFLTVYESPSMPQCFEILSQQHGASEILSRLENLQISDGFILTVSLCKQLTSLRDLFFWPERSKPDATMMGLTEEQERALQLLTSLERLNFWGLPNLLSLPANLASLTSLEWLDISDCPRMARLPEMGLPPSLRRLSLCRCSDDLSMQCRMVATEKLQVEIDDETID
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.449281 | 0.368280 | 0.270999 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0621500 | SBH | 0.234283 | 0.758905 | 0.758510 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0621500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0026930 | RBH | 1.003033 | 2.395791 | 4.491940 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0027710 | RBH | 0.103852 | 10.445362 | 1.663262 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0027430 | RBH | 3.192248 | 6.534117 | 14.789726 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0027120 | SBH | 0.035252 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0027410 | RBH | 2.433429 | 9.948519 | 8.328281 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0496800 | SBH | 4.2219485 | 12.3049565 | 8.2823945 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0026240 | SBH | 0.520346 | 0.0 | 0.165746 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0501100 | SBH | 0.7369925 | 21.3484885 | 3.003533 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0026640 | SBH | 0.019693 | 0.221956 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0026460 | SBH | 0.164668 | 7.370833 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0026530 | SBH | 2.316206 | 12.307158 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0026980 | SBH | 1.371948 | 0.377353 | 1.140641 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0027150 | SBH | 0.056504 | 1.343484 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G026380 | RBH | 0.157113 | 7.582769 | 2.315366 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0026220 | SBH | 0.361956 | 32.372398 | 2.055341 |
