Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g41740 | OGI:04075080 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:24740703-24742677 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCCCATGCAAAAGAAACAGAATGGCAAGCCAAACCACCATGTGACCCCAGGCAAACGCAGACAACGCCTTCCCCGGTCGCCGCCTCGCCAAGGGACCCCATTTCCACGGCACCTCAGAACCGAGGAGAGATGCCCTGCCAACCTCCTCGATCGTGGCGGTCCGCGGATCCGGCGCTCGTTTCGCTCGGTTTCCTGCAGAAAACACGCTGTCCATCTGGAGTTCTGGACATCTGGTCTGAACTCTGAACACCGATCCGTTCTCTATAATTAAGTGACAGCATATCACAATCTCCTGTACAGTTCTAAACCTGTTTGCTGTCCAATCCCATTGCCACCTTGCTTACAACCAAGTAATAACAGGAGCAGTACTTGCTCAGAGAGGTGATGAGAAGAAAAACAGAGATGATTCAGACTACCCCCTGCGTCGCGCTGCTCTTGCTCGTCGGCGTTGCTTTTGCTGCTCGATCGGCGTCGGCTATCACCGATGGTAAGAGCCTTCCATAGTACATTTGCCAGCTTAAGATCGTACATGCGATTTAGACGGTTAATCAGTTGCACGATAAATTTGTGACGCTCATTTCTGCTTAGATAGTACTGAAAATGACGAAAGATCGCTGATATGTCATTCTGCTTGCTGCGTGTATTTTTCAGGCCTGCTGCCGAATGGCAACTTCGAGGAGGCGCCGGACAAGTCGCAGATGAACGGCACGAGGGTGACGGGTCGCTACGCGATACCTCAGTGGGAGATCTCCGGGTTCGTGGAGTACATCGGGTCGGGCCAGAAGCAGGGAGACATGCTCCTGCCGGTGCCGGAGGGCGCGTACGCCGTGCGGCTGGGCAACGAGGCCTCCATCCAGCAGCGGCTTACCCTGACGCGGGGAATGCACTACTCCATCACATTCAGCGCGGCGCGCACCTGCGCCCAGTCCGAGCTCCTCAACATCACGATCACCCCCGAGTCCGGCGAGATCCCCATCCAGACGGTGTACACCAGCAGCGGCTGGGACTCCTACTCCTGGGCCTTCAAGGCCAAGCACAGCGTCGTGTTGTTCATCGTCCACAACCCCGGTGTCTCTGATGACGAAGCTTGCGGCCCCCTCATCGACTCGTTCGCCATTAAGACCCTGAACCCTCCTCAAAGAACGAAAGGTAATTAATTAATTGAGCCGGGTGCTAACCTCTCCACAAAGCTGCTATCAGTGTGCATCTCTACAAAATTGAATACAAGGATGTGCTCACAGTCATGAAACAATCGAACAAAATGAACCAGGTAACATGCTGAAGAATGGGGGCTTCGAGGAGGGCCCGTACATCTTCCCCAACACGTCCTGGGGCGTGCTTGTGCCGCCCATGGACGAGGACGACTACTCGCCGCTGTCCCCGTGGACGATCCTGTCGACCACCAAGTCCGTCAAGTACATCGACGCGGCGCACTACGCTGTGCCGGGCGGCGCCCGCGCGGTTGAGCTGGTGTCCGGCATGGAGACGGCGATGCTGCAGGAGGTGAGCACCGTGCCCGGGCGGTCGTACAGGCTGGAGTTCTCCGTCGGGGACGCCGGCGACGGGTGCTCCGGGTCCCTGACCGTGCAGGCGTACGCGTCGCGCGGGAGCGTGAAGGTGACGTACCAGTCGCAGGGCACGGGCGGCTACAAGCGCGGGCTGCTCGAGTTCACGGCCACGGAGAAACGGACGCGGGTAGTGTTCGTCAGCATGGCCTACACCACGAAGTCCGACGGCACGCTGTGTGGTCCCGTCATCGACGACGCGTCGCTCGTCAGTGTCCACAGCCACCGCCGGTTCCTTCTGTAATATTATTACTATCGTCAAAGTCACTAGAATTTAAAATGACTTAAAGTTGTCCCATATGAAGGAATATCTCAATTCCTTTTATATGATTCTTATGCCAAAAGGGTGAGATGATTTTTTTTACCGAGGAAAAAAATGTGAGATATTATGGATGCAATTGATAGAAAAC
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| CDS seq | ATGAGAAGAAAAACAGAGATGATTCAGACTACCCCCTGCGTCGCGCTGCTCTTGCTCGTCGGCGTTGCTTTTGCTGCTCGATCGGCGTCGGCTATCACCGATGGCCTGCTGCCGAATGGCAACTTCGAGGAGGCGCCGGACAAGTCGCAGATGAACGGCACGAGGGTGACGGGTCGCTACGCGATACCTCAGTGGGAGATCTCCGGGTTCGTGGAGTACATCGGGTCGGGCCAGAAGCAGGGAGACATGCTCCTGCCGGTGCCGGAGGGCGCGTACGCCGTGCGGCTGGGCAACGAGGCCTCCATCCAGCAGCGGCTTACCCTGACGCGGGGAATGCACTACTCCATCACATTCAGCGCGGCGCGCACCTGCGCCCAGTCCGAGCTCCTCAACATCACGATCACCCCCGAGTCCGGCGAGATCCCCATCCAGACGGTGTACACCAGCAGCGGCTGGGACTCCTACTCCTGGGCCTTCAAGGCCAAGCACAGCGTCGTGTTGTTCATCGTCCACAACCCCGGTGTCTCTGATGACGAAGCTTGCGGCCCCCTCATCGACTCGTTCGCCATTAAGACCCTGAACCCTCCTCAAAGAACGAAAGGTAACATGCTGAAGAATGGGGGCTTCGAGGAGGGCCCGTACATCTTCCCCAACACGTCCTGGGGCGTGCTTGTGCCGCCCATGGACGAGGACGACTACTCGCCGCTGTCCCCGTGGACGATCCTGTCGACCACCAAGTCCGTCAAGTACATCGACGCGGCGCACTACGCTGTGCCGGGCGGCGCCCGCGCGGTTGAGCTGGTGTCCGGCATGGAGACGGCGATGCTGCAGGAGGTGAGCACCGTGCCCGGGCGGTCGTACAGGCTGGAGTTCTCCGTCGGGGACGCCGGCGACGGGTGCTCCGGGTCCCTGACCGTGCAGGCGTACGCGTCGCGCGGGAGCGTGAAGGTGACGTACCAGTCGCAGGGCACGGGCGGCTACAAGCGCGGGCTGCTCGAGTTCACGGCCACGGAGAAACGGACGCGGGTAGTGTTCGTCAGCATGGCCTACACCACGAAGTCCGACGGCACGCTGTGTGGTCCCGTCATCGACGACGCGTCGCTCGTCAGTGTCCACAGCCACCGCCGGTTCCTTCTGTAA
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| Protein seq | MRRKTEMIQTTPCVALLLLVGVAFAARSASAITDGLLPNGNFEEAPDKSQMNGTRVTGRYAIPQWEISGFVEYIGSGQKQGDMLLPVPEGAYAVRLGNEASIQQRLTLTRGMHYSITFSAARTCAQSELLNITITPESGEIPIQTVYTSSGWDSYSWAFKAKHSVVLFIVHNPGVSDDEACGPLIDSFAIKTLNPPQRTKGNMLKNGGFEEGPYIFPNTSWGVLVPPMDEDDYSPLSPWTILSTTKSVKYIDAAHYAVPGGARAVELVSGMETAMLQEVSTVPGRSYRLEFSVGDAGDGCSGSLTVQAYASRGSVKVTYQSQGTGGYKRGLLEFTATEKRTRVVFVSMAYTTKSDGTLCGPVIDDASLVSVHSHRRFLL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g41740 | LOC_Os04g41740.1 | Chr04 | 24740703 | 24742677 | + | MSU_osa1r7 | ||
| CDS seq | ATGAGAAGAAAAACAGAGATGATTCAGACTACCCCCTGCGTCGCGCTGCTCTTGCTCGTCGGCGTTGCTTTTGCTGCTCGATCGGCGTCGGCTATCACCGATGGCCTGCTGCCGAATGGCAACTTCGAGGAGGCGCCGGACAAGTCGCAGATGAACGGCACGAGGGTGACGGGTCGCTACGCGATACCTCAGTGGGAGATCTCCGGGTTCGTGGAGTACATCGGGTCGGGCCAGAAGCAGGGAGACATGCTCCTGCCGGTGCCGGAGGGCGCGTACGCCGTGCGGCTGGGCAACGAGGCCTCCATCCAGCAGCGGCTTACCCTGACGCGGGGAATGCACTACTCCATCACATTCAGCGCGGCGCGCACCTGCGCCCAGTCCGAGCTCCTCAACATCACGATCACCCCCGAGTCCGGCGAGATCCCCATCCAGACGGTGTACACCAGCAGCGGCTGGGACTCCTACTCCTGGGCCTTCAAGGCCAAGCACAGCGTCGTGTTGTTCATCGTCCACAACCCCGGTGTCTCTGATGACGAAGCTTGCGGCCCCCTCATCGACTCGTTCGCCATTAAGACCCTGAACCCTCCTCAAAGAACGAAAGGTAACATGCTGAAGAATGGGGGCTTCGAGGAGGGCCCGTACATCTTCCCCAACACGTCCTGGGGCGTGCTTGTGCCGCCCATGGACGAGGACGACTACTCGCCGCTGTCCCCGTGGACGATCCTGTCGACCACCAAGTCCGTCAAGTACATCGACGCGGCGCACTACGCTGTGCCGGGCGGCGCCCGCGCGGTTGAGCTGGTGTCCGGCATGGAGACGGCGATGCTGCAGGAGGTGAGCACCGTGCCCGGGCGGTCGTACAGGCTGGAGTTCTCCGTCGGGGACGCCGGCGACGGGTGCTCCGGGTCCCTGACCGTGCAGGCGTACGCGTCGCGCGGGAGCGTGAAGGTGACGTACCAGTCGCAGGGCACGGGCGGCTACAAGCGCGGGCTGCTCGAGTTCACGGCCACGGAGAAACGGACGCGGGTAGTGTTCGTCAGCATGGCCTACACCACGAAGTCCGACGGCACGCTGTGTGGTCCCGTCATCGACGACGCGTCGCTCGTCAGTGTCCACAGCCACCGCCGGTTCCTTCTGTAA
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| Protein seq | MRRKTEMIQTTPCVALLLLVGVAFAARSASAITDGLLPNGNFEEAPDKSQMNGTRVTGRYAIPQWEISGFVEYIGSGQKQGDMLLPVPEGAYAVRLGNEASIQQRLTLTRGMHYSITFSAARTCAQSELLNITITPESGEIPIQTVYTSSGWDSYSWAFKAKHSVVLFIVHNPGVSDDEACGPLIDSFAIKTLNPPQRTKGNMLKNGGFEEGPYIFPNTSWGVLVPPMDEDDYSPLSPWTILSTTKSVKYIDAAHYAVPGGARAVELVSGMETAMLQEVSTVPGRSYRLEFSVGDAGDGCSGSLTVQAYASRGSVKVTYQSQGTGGYKRGLLEFTATEKRTRVVFVSMAYTTKSDGTLCGPVIDDASLVSVHSHRRFLL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0494800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g41750 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0494800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0018370 | SBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0019150 | SBH | 0.0 | 0.0 | 0.062964 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0018860 | SBH | 0.0 | 0.858136 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0018570 | RBH | 0.0 | 0.048770 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0018800 | SBH | 0.0 | 2.256930 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0386400 | SBH | 0.014882 | 0.30196 | 0.0147495 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0017580 | SBH | 0.0 | 0.188617 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0386600 | SBH | 0.0355415 | 0.003324 | 0.0298035 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0018080 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0017930 | SBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0018020 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0018430 | SBH | 0.0 | 0.089713 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0018590 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G017870 | SBH | 0.0 | 0.273143 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0017820 | SBH | 0.0 | 0.0 | 0.0 |
