Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g16826 | OGI:03070620 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:9156712-9157117 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TAACCCCAAAAGAACCAGATTTCGTAAACAACATAGAGGAAGAATGAAGGGAAAATCCTACCGAGGCAATTGTATTTGTTTTGGTAGATATGCTCTTCAAGCACTTGAACCCACTTGGATTACGGCGAGGCAGATAGAAGCAGGACGAAGAGCAATGACACGATATGCACGTCGTGGTGGAAAAATCTGGGTACGTATATTTCCCGACAAACCGGTTACAATAAGACCGACCGAAACACGTATGGGTTCGGGAAAGGGATCCCCCGAATATTGGGTAGCCGTTGTTAAACCAGGTCGAATACTTTATGAAATGGGCGGAGTATCCGAAACTGTAGCTAGAGTAGCTATTTCCATAGCTGCCAGCAAAATGCCCATACGAAGTCAATTTCTTCGGTTAGAAATATAA
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| CDS seq | ATGAAGGGAAAATCCTACCGAGGCAATTGTATTTGTTTTGGTAGATATGCTCTTCAAGCACTTGAACCCACTTGGATTACGGCGAGGCAGATAGAAGCAGGACGAAGAGCAATGACACGATATGCACGTCGTGGTGGAAAAATCTGGGTACGTATATTTCCCGACAAACCGGTTACAATAAGACCGACCGAAACACGTATGGGTTCGGGAAAGGGATCCCCCGAATATTGGGTAGCCGTTGTTAAACCAGGTCGAATACTTTATGAAATGGGCGGAGTATCCGAAACTGTAGCTAGAGTAGCTATTTCCATAGCTGCCAGCAAAATGCCCATACGAAGTCAATTTCTTCGGTTAGAAATATAA |
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| Protein seq | MKGKSYRGNCICFGRYALQALEPTWITARQIEAGRRAMTRYARRGGKIWVRIFPDKPVTIRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVSETVARVAISIAASKMPIRSQFLRLEI |
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| Function | 50S ribosomal protein L16, chloroplastic [UniProtKB/Swiss-Prot:P0C442] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g16826 | LOC_Os04g16826.1 | Chr04 | 9156712 | 9157117 | + | MSU_osa1r7 | ||
| CDS seq | ATGAAGGGAAAATCCTACCGAGGCAATTGTATTTGTTTTGGTAGATATGCTCTTCAAGCACTTGAACCCACTTGGATTACGGCGAGGCAGATAGAAGCAGGACGAAGAGCAATGACACGATATGCACGTCGTGGTGGAAAAATCTGGGTACGTATATTTCCCGACAAACCGGTTACAATAAGACCGACCGAAACACGTATGGGTTCGGGAAAGGGATCCCCCGAATATTGGGTAGCCGTTGTTAAACCAGGTCGAATACTTTATGAAATGGGCGGAGTATCCGAAACTGTAGCTAGAGTAGCTATTTCCATAGCTGCCAGCAAAATGCCCATACGAAGTCAATTTCTTCGGTTAGAAATATAA
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| Protein seq | MKGKSYRGNCICFGRYALQALEPTWITARQIEAGRRAMTRYARRGGKIWVRIFPDKPVTIRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVSETVARVAISIAASKMPIRSQFLRLEI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 10.665731 | 6.948205 | 6.113594 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0269100 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g21344 | RBH | 18.004576 | 17.704330 | 8.002806 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0269100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0026730 | SBH | 14.981764 | 50.575138 | 133.544754 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0035890 | SBH | 13.145954 | 26.207108 | 47.520508 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0036260 | SBH | 11.192279 | 18.540056 | 58.990185 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0035650 | SBH | 13.238655 | 1.021801 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0007750 | RBH | 414.002625 | 192.582275 | 1194.498901 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0227000 | SBH | 616.3807675 | 329.1249695 | 270.5755005 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0007470 | RBH | 37.755905 | 5.577140 | 41.794212 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0227500 | RBH | 778.5061645 | 178.1831285 | 159.061943 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0004620 | RBH | 26.624899 | 2.423838 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0007440 | SBH | 27.437029 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0007360 | SBH | 80.257927 | 110.143013 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0019860 | SBH | 26.748146 | 0.0 | 28.370596 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0007870 | RBH | 26.043190 | 59.121384 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G026050 | RBH | 51.216404 | 33.987991 | 104.823463 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0025810 | SBH | 54.282810 | 284.303741 | 253.209412 |
