Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0269100 | OGI:03070620 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:9306923-9307333 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTTACTAGGGTTTGAAATTTCAGGGCGTATAGGCATTTTGGTGGCAGCTATGGAAATAGCTGCTCTAGCTACTGCTTCGGGTACTCCACCCATTTCATAAAGTATTCGGCCTTTTTTAACAACGGCTACCCAATATTCGGGGGATCCCTTTCCCGAACCCATACGTGTTTCCGTCGGTCTTATTGTAACTAGTTTGTCGGGAAATATACGTACCCAGATTTTTCCACCATGACGTGCATATCGTGTCATTGCTCTTTGTCCTGCTTCTATATGCCTTGCCGTAATCCAAGTGGGTTCAAGTGCTTGAAGAGCATATCTACCAAAATGAATACAATTGCCTCGGTAGGATTTTCCCTTCATTCTTCCTCTATGTTGTTCACGAAATCTGATTCTTTTGGGGTTATAGTCGAT
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| CDS seq | ATCGACTATAACCCCAAAAGAATCAGATTTCGTGAACAACATAGAGGAAGAATGAAGGGAAAATCCTACCGAGGCAATTGTATTCATTTTGGTAGATATGCTCTTCAAGCACTTGAACCCACTTGGATTACGGCAAGGCATATAGAAGCAGGACAAAGAGCAATGACACGATATGCACGTCATGGTGGAAAAATCTGGGTACGTATATTTCCCGACAAACTAGTTACAATAAGACCGACGGAAACACGTATGGGTTCGGGAAAGGGATCCCCCGAATATTGGGTAGCCGTTGTTAAAAAAGGCCGAATACTTTATGAAATGGGTGGAGTACCCGAAGCAGTAGCTAGAGCAGCTATTTCCATAGCTGCCACCAAAATGCCTATACGCCCTGAAATTTCAAACCCTAGTAAG
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| Protein seq | IDYNPKRIRFREQHRGRMKGKSYRGNCIHFGRYALQALEPTWITARHIEAGQRAMTRYARHGGKIWVRIFPDKLVTIRPTETRMGSGKGSPEYWVAVVKKGRILYEMGGVPEAVARAAISIAATKMPIRPEISNPSK |
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| Function | 50S ribosomal protein L16, chloroplastic [UniProtKB/Swiss-Prot:P0C442] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0269100 | OsNip_11t0269100-00 | Chr11 | 9306923 | 9307333 | - | RAP2018-11-26 | ||
| CDS seq | ATCGACTATAACCCCAAAAGAATCAGATTTCGTGAACAACATAGAGGAAGAATGAAGGGAAAATCCTACCGAGGCAATTGTATTCATTTTGGTAGATATGCTCTTCAAGCACTTGAACCCACTTGGATTACGGCAAGGCATATAGAAGCAGGACAAAGAGCAATGACACGATATGCACGTCATGGTGGAAAAATCTGGGTACGTATATTTCCCGACAAACTAGTTACAATAAGACCGACGGAAACACGTATGGGTTCGGGAAAGGGATCCCCCGAATATTGGGTAGCCGTTGTTAAAAAAGGCCGAATACTTTATGAAATGGGTGGAGTACCCGAAGCAGTAGCTAGAGCAGCTATTTCCATAGCTGCCACCAAAATGCCTATACGCCCTGAAATTTCAAACCCTAGTAAG
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| Protein seq | IDYNPKRIRFREQHRGRMKGKSYRGNCIHFGRYALQALEPTWITARHIEAGQRAMTRYARHGGKIWVRIFPDKLVTIRPTETRMGSGKGSPEYWVAVVKKGRILYEMGGVPEAVARAAISIAATKMPIRPEISNPSK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g21344 | RBH | 18.004576 | 17.704330 | 8.002806 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0269100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0006030 | SBH | 12.395317 | 32.078926 | 118.611267 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0227500 | RBH | 778.5061645 | 178.1831285 | 159.061943 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
