Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g02970 | OGI:04004240 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:1201202-1202917 | ||||||||
| Gene Symbol | OsSLPP1, SLPP1 | ||||||||||
| DNA seq | ATGGCCTTCGGCGACGGGATGGCCAAGGGCGTGGCGCTGTGGGGACGGGCGACGGCGCCGCAGCCCATGGGATGGTGGTGGGCTGCTGGCGGCGCTAGGGAGATTGAGATTGGGCGGCGGCGTGGTGATAGGAATGGTTACCATGGGTTATGGGCTAGATCGCAAATGGGCATTGTTAGGCTTCCTCTAGACTCCTCTGTGCTGTTGTTATTTCTTGGCTCATTTAGCTCGTGAGCGGCTCATGAGCCCGCTTGACCCCCTGCTCAGCACGCTAACAATTTTCAACGAGCTGAATCGAGCCGAACCGACCATGAATCGAGCGAGCTAATGAGCCACGAGCTTTCTATCCACCTCCATGCGTGGGAGAATCTGGAGAGCAAAGCGTAGAGAAACAAATGCCCTTTCCTGAACCTGCCGACACACGTATGGCTTCACTTCTTGCTGCCCCACTCAACTCCTCTACCGTCTCTTCATGTGCTATCTGCCTCTACCACCTCCCTCCTGCTTCGGCGAAATTTTCTACCAGCAAAGGTTTGTTTAAAGATCTGTGCACTGGTAAGAGTTTATCTGCCGGGAAGCTTAAATTTAGTGGCCAATTGGTCTGTCGAAAATGTCTTTTTCTGTTGGCAAAGAATTTTATTGACATGTTCTTTCCCACTCACTTGTTTCCTATTGAGAAAAGCCTTTACTGACAGGCCGAATGACATCATAAACACATAACCTTTGCCGACAATTGAGCTGTTGGTGCATTTAGGTCATGGTGCAGTGATGTAATGAAGTTTCCAGTCTAAGTCCACCAAACACACAAGTATCTTGGACCTCCAAATTTAACTTTTTCCTGTTTTCTCTTGTTGCTAATCCCCTGGTGGCCACTCGCCAAGAAAATATGTTCATTTGATGATGTATATATTGAGCTAATAACATTCTGAATTCTGATATTTTATATTTCAAAACATGCAGCACTTACATATGACAACAACGGGATGCCAATACAAGCTAATGGAAGAGTTCAAAAGATTGCTGATCCTTTTGATTATGGAGCAGGGTTTGTTAATCCGGTCATGGCAGCTGATCCAGGCCTTATCTACGACATCACCGCATCTGATTACCTCAAATTCTTCAACTGCATGGGAGGATTAGGCTCAGGGGACAATTGCACCACAGCGAAAGGATCACTTACTGACCTGAACCTCCCATCCATTGCCATCCCTAACCTCAGGACATTCCAAGCTATGACACGCACTGTCACCAATGTTGGCCAAGTTAATGCCGTGTATAAGGCATTCTTCCAAGCTCCAGCTGGTGTCGAGATGGCCGTCGAGCCACCAGTGCTGGTGTTCAACAAGAACAGAAGAGTGCAGAGCTTCAGGGTGACCTTCAAGGCTACACGAAAGGTGCAGGGTGACTACAGGTTTGGAAGCTTGGCGTGGCATGATGGAGGCAGCCACTGGGTTCGGATCCCCATCGCCGTTCGCATCGTGATTGAGGAGATCTACTCCAAGATCTCCTAATTAATTGGATATTGGATATATATGCTAGCTACTAATGATGCTAGTTGATCAATGGTCGAATGGAATAAATGAAGGCGAATTCATATGCTCCAATATATAGCATGTTATATGTGTTTCTGGAATCTTGCTGCATCTTATTCCAAATCCAAGTGGCGTATATCTGTTAAAATTTATGGTTGAATAATATATCTAATCTTGTGTTAGA
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| CDS seq | ATGGCCTTCGGCGACGGGATGGCCAAGGGCGTGGCGCTGTGGGGACGGGCGACGGCGCCGCAGCCCATGGGATGGTGGTGGGCTGCTGGCGGCGCTAGGGAGATTGAGATTGGGCGGCGGCGTGGTGATAGGAATGCACTTACATATGACAACAACGGGATGCCAATACAAGCTAATGGAAGAGTTCAAAAGATTGCTGATCCTTTTGATTATGGAGCAGGGTTTGTTAATCCGGTCATGGCAGCTGATCCAGGCCTTATCTACGACATCACCGCATCTGATTACCTCAAATTCTTCAACTGCATGGGAGGATTAGGCTCAGGGGACAATTGCACCACAGCGAAAGGATCACTTACTGACCTGAACCTCCCATCCATTGCCATCCCTAACCTCAGGACATTCCAAGCTATGACACGCACTGTCACCAATGTTGGCCAAGTTAATGCCGTGTATAAGGCATTCTTCCAAGCTCCAGCTGGTGTCGAGATGGCCGTCGAGCCACCAGTGCTGGTGTTCAACAAGAACAGAAGAGTGCAGAGCTTCAGGGTGACCTTCAAGGCTACACGAAAGGTGCAGGGTGACTACAGGTTTGGAAGCTTGGCGTGGCATGATGGAGGCAGCCACTGGGTTCGGATCCCCATCGCCGTTCGCATCGTGATTGAGGAGATCTACTCCAAGATCTCCTAA
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| Protein seq | MAFGDGMAKGVALWGRATAPQPMGWWWAAGGAREIEIGRRRGDRNALTYDNNGMPIQANGRVQKIADPFDYGAGFVNPVMAADPGLIYDITASDYLKFFNCMGGLGSGDNCTTAKGSLTDLNLPSIAIPNLRTFQAMTRTVTNVGQVNAVYKAFFQAPAGVEMAVEPPVLVFNKNRRVQSFRVTFKATRKVQGDYRFGSLAWHDGGSHWVRIPIAVRIVIEEIYSKIS |
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| Function | Subtilisin-like protease SBT3.11 [UniProtKB/Swiss-Prot:Q1PDX5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g02970 | LOC_Os04g02970.1 | Chr04 | 1201202 | 1202917 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCCTTCGGCGACGGGATGGCCAAGGGCGTGGCGCTGTGGGGACGGGCGACGGCGCCGCAGCCCATGGGATGGTGGTGGGCTGCTGGCGGCGCTAGGGAGATTGAGATTGGGCGGCGGCGTGGTGATAGGAATGCACTTACATATGACAACAACGGGATGCCAATACAAGCTAATGGAAGAGTTCAAAAGATTGCTGATCCTTTTGATTATGGAGCAGGGTTTGTTAATCCGGTCATGGCAGCTGATCCAGGCCTTATCTACGACATCACCGCATCTGATTACCTCAAATTCTTCAACTGCATGGGAGGATTAGGCTCAGGGGACAATTGCACCACAGCGAAAGGATCACTTACTGACCTGAACCTCCCATCCATTGCCATCCCTAACCTCAGGACATTCCAAGCTATGACACGCACTGTCACCAATGTTGGCCAAGTTAATGCCGTGTATAAGGCATTCTTCCAAGCTCCAGCTGGTGTCGAGATGGCCGTCGAGCCACCAGTGCTGGTGTTCAACAAGAACAGAAGAGTGCAGAGCTTCAGGGTGACCTTCAAGGCTACACGAAAGGTGCAGGGTGACTACAGGTTTGGAAGCTTGGCGTGGCATGATGGAGGCAGCCACTGGGTTCGGATCCCCATCGCCGTTCGCATCGTGATTGAGGAGATCTACTCCAAGATCTCCTAA
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| Protein seq | MAFGDGMAKGVALWGRATAPQPMGWWWAAGGAREIEIGRRRGDRNALTYDNNGMPIQANGRVQKIADPFDYGAGFVNPVMAADPGLIYDITASDYLKFFNCMGGLGSGDNCTTAKGSLTDLNLPSIAIPNLRTFQAMTRTVTNVGQVNAVYKAFFQAPAGVEMAVEPPVLVFNKNRRVQSFRVTFKATRKVQGDYRFGSLAWHDGGSHWVRIPIAVRIVIEEIYSKIS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0120100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g02990 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0120100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0001000 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0000960 | SBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0001030 | SBH | 3.400398 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0001050 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0001020 | RBH | 1.103219 | 0.0 | 4.025638 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0024200 | RBH | 0.1434405 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0001150 | SBH | 0.000000 | 0.0 | 0.025580 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0023800 | SBH | 0.6319025 | 0 | 0.02575 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0001110 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0001110 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0001120 | RBH | 3.698248 | 10.628968 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0000960 | RBH | 0.146996 | 0.0 | 0.446234 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0001150 | RBH | 0.030854 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G001070 | SBH | 0.102419 | 0.0 | 0.128318 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0001120 | RBH | 0.305872 | 0.0 | 0.0 |
