Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g41390 | OGI:03066220 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:23036228-23037437 | ||||||||
| Gene Symbol | DLN92, OsDLN92, OsMSR15 | ||||||||||
| DNA seq | TACACATCAAAGCAAATTGTATTGATTATATACGTGTCTAAATTATCAAAAGGAGAAGTGGTATAAATCCGTATACCACATGATACACACACCAAACCAATCAATGAAAGAATCATTCTACACGGAAATTTAAATACAAGAAATGAATTATACACACAAACTCCACCAATAATATATCGGAGACCAGCTCGCCTGAATCTACAGTATTTCACCAGCAAATTACTCACAACTAATTAATCACTAATCCAACAGTTGCAGCAAGGATGAGTAGACTTGTGGTGCTAGATTAATTATTTTTTTTAATTAAGCAGGGATCATTAGCCTTGGCTTCTTGAAGCTGGCAAGCGGGCTGAGCACCTCCTCCTCCTCGGCCGCCGCCGGCAAGCACCGCTCCGTCATGATGTCCGGCAGCGCCACCGCCGGCAGGTTCAGATCGAACCCGCGGCCGGCGACAGCGGCGCCGCCGCCGCTTCCGATCGGGCCCTCGTAGTGGCACCGCTTGTGCCCGCCCAGCGCCTGCCCCGTCGGGAACGTCTTCTTGCACACGGAGCACTCGTGCACCTTGTTTCCGCCGCCGCCGCCGCTGCCGGAGCCGGAATTGGACGAGGACGCGGCCGGCGAGGCCGTCGTCGCTGCCGGCTCGTCTACGACGACAACGGCCGCCATCGTCGGCGGCGTCCTGGGGCGGTGGCTCGTCTTGTGGCCGCCGAGCGCCTGGTAGGACGAGAACACCCTGCCGCACACGGAGCACCCGTGCTGCTCCTGCGGCGCCGGCGAGGGGTCGCGGTGGCCGCGCGCCAGCATGAGGAGGCTGAGCGCGAGGTGCTCCTCCTCCGAACCGTGAGGCGGCGGCGCAGCGGCGCGGTCGCGGTGGCGCCGCCTCGAGCGCTTCCGCTTGGACCACCCCTCGGCGCCGCCGCACCGTTGCTGCGGCTTCCGCGCCCCCACCTCCTCGCCGCTCGCCGCCGGCGACGACGACAGCATCGGCGCGGCGCCATCAAGAACCTCCTCCACTGCCATGCCTAGCTAACTAGCTAATACTAACAAGACAAGAATAATCAGTGGAGTAGAGTAATGGGCAAAGAAAAGAGTAGTAAGCTACTCTAATTGCTAGCTAGGCATGCAGTGGCGTTGGCAATTGTGAGAGAGATGATGAGTTTGTGAGTTGTGAGGTGTGGATTTATACAAGCAAACTACAGAGACAGCAAGT
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| CDS seq | ATGGCAGTGGAGGAGGTTCTTGATGGCGCCGCGCCGATGCTGTCGTCGTCGCCGGCGGCGAGCGGCGAGGAGGTGGGGGCGCGGAAGCCGCAGCAACGGTGCGGCGGCGCCGAGGGGTGGTCCAAGCGGAAGCGCTCGAGGCGGCGCCACCGCGACCGCGCCGCTGCGCCGCCGCCTCACGGTTCGGAGGAGGAGCACCTCGCGCTCAGCCTCCTCATGCTGGCGCGCGGCCACCGCGACCCCTCGCCGGCGCCGCAGGAGCAGCACGGGTGCTCCGTGTGCGGCAGGGTGTTCTCGTCCTACCAGGCGCTCGGCGGCCACAAGACGAGCCACCGCCCCAGGACGCCGCCGACGATGGCGGCCGTTGTCGTCGTAGACGAGCCGGCAGCGACGACGGCCTCGCCGGCCGCGTCCTCGTCCAATTCCGGCTCCGGCAGCGGCGGCGGCGGCGGAAACAAGGTGCACGAGTGCTCCGTGTGCAAGAAGACGTTCCCGACGGGGCAGGCGCTGGGCGGGCACAAGCGGTGCCACTACGAGGGCCCGATCGGAAGCGGCGGCGGCGCCGCTGTCGCCGGCCGCGGGTTCGATCTGAACCTGCCGGCGGTGGCGCTGCCGGACATCATGACGGAGCGGTGCTTGCCGGCGGCGGCCGAGGAGGAGGAGGTGCTCAGCCCGCTTGCCAGCTTCAAGAAGCCAAGGCTAATGATCCCTGCTTAA
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| Protein seq | MAVEEVLDGAAPMLSSSPAASGEEVGARKPQQRCGGAEGWSKRKRSRRRHRDRAAAPPPHGSEEEHLALSLLMLARGHRDPSPAPQEQHGCSVCGRVFSSYQALGGHKTSHRPRTPPTMAAVVVVDEPAATTASPAASSSNSGSGSGGGGGNKVHECSVCKKTFPTGQALGGHKRCHYEGPIGSGGGAAVAGRGFDLNLPAVALPDIMTERCLPAAAEEEEVLSPLASFKKPRLMIPA |
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| Function | Zinc finger protein 1 [UniProtKB/Swiss-Prot:Q42430] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g41390 | LOC_Os03g41390.1 | Chr03 | 23036228 | 23037437 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCAGTGGAGGAGGTTCTTGATGGCGCCGCGCCGATGCTGTCGTCGTCGCCGGCGGCGAGCGGCGAGGAGGTGGGGGCGCGGAAGCCGCAGCAACGGTGCGGCGGCGCCGAGGGGTGGTCCAAGCGGAAGCGCTCGAGGCGGCGCCACCGCGACCGCGCCGCTGCGCCGCCGCCTCACGGTTCGGAGGAGGAGCACCTCGCGCTCAGCCTCCTCATGCTGGCGCGCGGCCACCGCGACCCCTCGCCGGCGCCGCAGGAGCAGCACGGGTGCTCCGTGTGCGGCAGGGTGTTCTCGTCCTACCAGGCGCTCGGCGGCCACAAGACGAGCCACCGCCCCAGGACGCCGCCGACGATGGCGGCCGTTGTCGTCGTAGACGAGCCGGCAGCGACGACGGCCTCGCCGGCCGCGTCCTCGTCCAATTCCGGCTCCGGCAGCGGCGGCGGCGGCGGAAACAAGGTGCACGAGTGCTCCGTGTGCAAGAAGACGTTCCCGACGGGGCAGGCGCTGGGCGGGCACAAGCGGTGCCACTACGAGGGCCCGATCGGAAGCGGCGGCGGCGCCGCTGTCGCCGGCCGCGGGTTCGATCTGAACCTGCCGGCGGTGGCGCTGCCGGACATCATGACGGAGCGGTGCTTGCCGGCGGCGGCCGAGGAGGAGGAGGTGCTCAGCCCGCTTGCCAGCTTCAAGAAGCCAAGGCTAATGATCCCTGCTTAA
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| Protein seq | MAVEEVLDGAAPMLSSSPAASGEEVGARKPQQRCGGAEGWSKRKRSRRRHRDRAAAPPPHGSEEEHLALSLLMLARGHRDPSPAPQEQHGCSVCGRVFSSYQALGGHKTSHRPRTPPTMAAVVVVDEPAATTASPAASSSNSGSGSGGGGGNKVHECSVCKKTFPTGQALGGHKRCHYEGPIGSGGGAAVAGRGFDLNLPAVALPDIMTERCLPAAAEEEEVLSPLASFKKPRLMIPA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.135997 | 0.139172 | 0.253475 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0610400 | RBH | 0.232412 | 0.239136 | 1.137972 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g39400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0610400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0026160 | RBH | 0.0 | 0.0 | 0.524571 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0025910 | RBH | 0.106257 | 0.0 | 0.262141 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0025960 | RBH | 0.0 | 1.844053 | 1.068080 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0025990 | RBH | 0.0 | 0.048789 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0025780 | RBH | 0.865868 | 2.846700 | 1.790045 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0404300 | RBH | 1.2076885 | 6.353846 | 2.244121 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0025560 | RBH | 0.0 | 0.265339 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0409000 | RBH | 2.224367 | 11.735461 | 0.289161 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0025820 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0025840 | RBH | 0.0 | 4.997577 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0025950 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0025700 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0025600 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G025680 | RBH | 0.0 | 0.706441 | 0.062199 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0025660 | RBH | 0.0 | 3.269683 | 1.296302 |
