Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g39400 | OGI:12062940 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:24237164-24238781 | ||||||||
| Gene Symbol | ZFP252, RZF71, DLN263, OsDLN263 | ||||||||||
| DNA seq | TATTTAATTATTTAGCTATAGCTGAGCAACCAAGAATTAATTAACAAAAAAATTAAATACATATGCGTATTTTTCTTATACATGTATTTTACATATTGTATATATATACATAAATTAAACCAATTCAACCAATGAAAGAATTGATCTGTAACTCCTATATCCAATTAAACCAAATCTAGCTAACAGGGGATTAATTACAAGATACAAATGATAGATGAACAAACAATGGCTATATACACAAACTAATCATCATTCCTAAGACTAATCACCAAATTAAGAAAGTAATTAACAGAAAAAACTATGGGTTTAATTTAATGGAATTTTATGGCTAAAATTAAACAAATCTTGTGGGCTTGGCTAGCTATGCCGGGATCATGAGCCTGGGCTTCTTGAAGGCGAGAGGGCTGAGCACCTCGTCGTCCTCCGCCGCGCACCGCTGGTCGGCGGCGGCGGCGACGTCCGGCAGCGCCGGCAGGTTGAGGTCGAAGCCCCGGCTCGCCGCCACCGCCACGGTCGTCTTCGCCGCCGGCTTGGACGCGCCGGCGCCGGCGGCGCTGCCGATCGTGCCGTCGTAGTGGCATCGCTTGTGGCCGCCCAGCGCCTGCCCCGTCGGGAACGCCTTGCCGCACACGTTGCACTCGTGCGCCCTCCCGCCGCCGCCGCCGGAGACGCCCGACGCCGACGAGGACGGCGTCGCGATAGCCGCCGGTTTCGTCTCCACCACCACCTCGTCGTCGTCGACCATGGCGGGCGGCGGCGGCTTCCGGTGGCTGGCCTTGTGGCCGCCGAGAGCCTGGTAGGACGCGAACGCCTTGCCGCAGACGGAGCACCGGTGCTCCACCGCCGCCGCCGCCGCCGACGCCGACGCCGCCACGTCGTCGCCGTCGCGTCGCCCGCGCGCCAGCATGAGGAGGCAGAGCGCGAGGTACTCCTCCTCGGAGGGCGGCAGCTGCGGTCGCCGCCGCCGCGACCGCTTCCGCTTCCCCCACCCCTCCACCTGTCCTCCTCCTCCTCCGCCGCCGCCGCCGCCGCCGTGCGTGACGATCACCTCCGCCTCCTCCTCACTACTACTTCTCGACGCCTCAAGAACCGCCTCCACCGCCATGGCCACTAGTAGCTTAATTAGCTAAGCTTGGAGATGATCACAACTATCTTAATTAATTGGGTTTCTTGAGCTTGCAAGGGAAAGAGAAGTGCACAAGAAAAATGGAAGGAGAAGAGAGAAATGGAGAAGAGGAGTGGTGAGTAGAATTGAAGAGTAGGGGAAGAGTGTGGGGTTTATATGAGGAGGACAAGTACTCCTACTAGAAACATATACTCCTACATGGAGAGAGATGGAGTGGAGTCTTGGGGTCAAACACCGAGAAAAATATATGGATCAACATGGATGAATTAGAGATTTATAATCAAGTCTGTGGATGATTGATTATGTGTTGCTAAATACCCTACTAAGCTAGCTTGCTTAGTACTACATGCATGGTTGGGATTCATTAGTTATTGATTATTCTACTAGCAAGATTATTCTAGAAGAGAAGAGAGTGTAGTACTGTAGTGTGTGCATGGTGCAAAATACTCCCCCGTCTTTAATATAGTAATCTAGTACCGGATGGAACACTTC
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| CDS seq | ATGGCGGTGGAGGCGGTTCTTGAGGCGTCGAGAAGTAGTAGTGAGGAGGAGGCGGAGGTGATCGTCACGCACGGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGACAGGTGGAGGGGTGGGGGAAGCGGAAGCGGTCGCGGCGGCGGCGACCGCAGCTGCCGCCCTCCGAGGAGGAGTACCTCGCGCTCTGCCTCCTCATGCTGGCGCGCGGGCGACGCGACGGCGACGACGTGGCGGCGTCGGCGTCGGCGGCGGCGGCGGCGGTGGAGCACCGGTGCTCCGTCTGCGGCAAGGCGTTCGCGTCCTACCAGGCTCTCGGCGGCCACAAGGCCAGCCACCGGAAGCCGCCGCCGCCCGCCATGGTCGACGACGACGAGGTGGTGGTGGAGACGAAACCGGCGGCTATCGCGACGCCGTCCTCGTCGGCGTCGGGCGTCTCCGGCGGCGGCGGCGGGAGGGCGCACGAGTGCAACGTGTGCGGCAAGGCGTTCCCGACGGGGCAGGCGCTGGGCGGCCACAAGCGATGCCACTACGACGGCACGATCGGCAGCGCCGCCGGCGCCGGCGCGTCCAAGCCGGCGGCGAAGACGACCGTGGCGGTGGCGGCGAGCCGGGGCTTCGACCTCAACCTGCCGGCGCTGCCGGACGTCGCCGCCGCCGCCGACCAGCGGTGCGCGGCGGAGGACGACGAGGTGCTCAGCCCTCTCGCCTTCAAGAAGCCCAGGCTCATGATCCCGGCATAG
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| Protein seq | MAVEAVLEASRSSSEEEAEVIVTHGGGGGGGGGGGQVEGWGKRKRSRRRRPQLPPSEEEYLALCLLMLARGRRDGDDVAASASAAAAAVEHRCSVCGKAFASYQALGGHKASHRKPPPPAMVDDDEVVVETKPAAIATPSSSASGVSGGGGGRAHECNVCGKAFPTGQALGGHKRCHYDGTIGSAAGAGASKPAAKTTVAVAASRGFDLNLPALPDVAAAADQRCAAEDDEVLSPLAFKKPRLMIPA |
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| Function | Zinc finger protein 1 [UniProtKB/Swiss-Prot:Q42430] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g39400 | LOC_Os12g39400.1 | Chr12 | 24237164 | 24238781 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGGTGGAGGCGGTTCTTGAGGCGTCGAGAAGTAGTAGTGAGGAGGAGGCGGAGGTGATCGTCACGCACGGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGACAGGTGGAGGGGTGGGGGAAGCGGAAGCGGTCGCGGCGGCGGCGACCGCAGCTGCCGCCCTCCGAGGAGGAGTACCTCGCGCTCTGCCTCCTCATGCTGGCGCGCGGGCGACGCGACGGCGACGACGTGGCGGCGTCGGCGTCGGCGGCGGCGGCGGCGGTGGAGCACCGGTGCTCCGTCTGCGGCAAGGCGTTCGCGTCCTACCAGGCTCTCGGCGGCCACAAGGCCAGCCACCGGAAGCCGCCGCCGCCCGCCATGGTCGACGACGACGAGGTGGTGGTGGAGACGAAACCGGCGGCTATCGCGACGCCGTCCTCGTCGGCGTCGGGCGTCTCCGGCGGCGGCGGCGGGAGGGCGCACGAGTGCAACGTGTGCGGCAAGGCGTTCCCGACGGGGCAGGCGCTGGGCGGCCACAAGCGATGCCACTACGACGGCACGATCGGCAGCGCCGCCGGCGCCGGCGCGTCCAAGCCGGCGGCGAAGACGACCGTGGCGGTGGCGGCGAGCCGGGGCTTCGACCTCAACCTGCCGGCGCTGCCGGACGTCGCCGCCGCCGCCGACCAGCGGTGCGCGGCGGAGGACGACGAGGTGCTCAGCCCTCTCGCCTTCAAGAAGCCCAGGCTCATGATCCCGGCATAG
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| Protein seq | MAVEAVLEASRSSSEEEAEVIVTHGGGGGGGGGGGQVEGWGKRKRSRRRRPQLPPSEEEYLALCLLMLARGRRDGDDVAASASAAAAAVEHRCSVCGKAFASYQALGGHKASHRKPPPPAMVDDDEVVVETKPAAIATPSSSASGVSGGGGGRAHECNVCGKAFPTGQALGGHKRCHYDGTIGSAAGAGASKPAAKTTVAVAASRGFDLNLPALPDVAAAADQRCAAEDDEVLSPLAFKKPRLMIPA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0583700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g41390 | RBH | 0.135997 | 0.139172 | 0.253475 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0583700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0018790 | RBH | 0.299174 | 1.902045 | 0.499375 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0018900 | RBH | 0.0 | 0.846775 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0019250 | RBH | 0.331611 | 2.633223 | 0.502348 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0018580 | RBH | 0.0 | 0.046292 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0018170 | RBH | 0.0 | 0.0 | 0.887412 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0322500 | RBH | 0.8025305 | 6.4998835 | 0.8693075 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0018050 | RBH | 0.0 | 0.301064 | 0.045308 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0351800 | RBH | 2.028503 | 29.5508185 | 0.036965 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0018250 | RBH | 0.064800 | 0.095676 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0018510 | RBH | 0.143622 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0018420 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0018460 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0018630 | RBH | 0.0 | 2.183732 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G018370 | RBH | 0.0 | 1.382969 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0018070 | RBH | 0.0 | 23.646994 | 1.224516 |
