Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsIR64_03g0025560 | OGI:03066220 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr03:25084315-25085523 | ||||||||
Gene Symbol | DLN92, OsDLN92, OsMSR15 | ||||||||||
DNA seq | ACACATCAAAGCAAATTGTATTGATTATATACGTGTCTAAATTATCAAAAGGGGAAGTGGTATAAATCCGTATACCACATGATACACACACCAAACCAATCAATGAAAGAATCATTCTACACGGAAATTTAAATACAAGAAATGAATTATACACACAAACTCCACCAATAATATATCGGAGACCAGCTCGCCTGAATCTACAGTATTTCACCAGCAAATTACTCACAACTAATTAATCACTAATCCAACAGTTGCAGCAAGGATGAATAGACTTGTGGTGCTAGATTAATTATTTTTTTTAATTAAGCAGGGATCATTAGCCTTGGCTTCTTGAAGCTGGCAAGCGGGCTGAGCACCTCCTCCTCCTCGGCCGCCGCCGGCAAGCACCGCTCCGTCATGATGTCCGGCAGCGCCACCGCCGGCAGGTTCAGATCGAACCCGCGGCCGGCGACAGCGGCGCCGCCGCCGCTTCCGATCGGGCCCTCGTAGTGGCACCGCTTGTGCCCGCCCAGCGCCTGCCCCGTCGGGAACGTCTTCTTGCACACGGAGCACTCGTGCACCTTGTTTCCGCCGCCGCCGCCGCTGCCGGAGCCGGAATTGGACGAGGACGCGGCCGGCGAGGCCGTCGTCGCCGCCGGCTCGTCTACGACGACAACGGCCGCCATCGTCGGCGGCGTCCTGGGGCGGTGGCTCGTCTTGTGGCCGCCGAGCGCCTGGTAGGACGAGAACACCCTGCCGCACACGGAGCACCCGTGCTGCTCCTGCGGCGCCGGCGAGGGGTCGCGGTGGCCGCGCGCCAGCATGAGGAGGCTGAGCGCGAGGTGCTCCTCCTCCGAACCGTGAGGCGGCGGCGCAGCGGCGCGGTCGCGGTGGCGCCGCCTCGAGCGCTTCCGCTTGGACCACCCCTCGGCGCCGCCGCACCGTTGCTGCGGCTTCCGCGCCCCCACCTCCTCGCCGCTCGCCGCCGGCGACGACGACAGCATCGGCGCGGCGCCATCAAGAACCTCCTCCACCGCCATGCCTAGCTAACTAGCTAATACTAACAAGACAAGAATAATCAGTGGAGTAGAGTAATGGGCAAAGAAAAGAGTAGTAAGCTACTCTAATTGCTAGCTAGGCATGCAGTGGCGTTGGCAATTTTGAGAGAGATGATGAGTTTGTGAGTTGTGAGGTGTGGATTTATACAAGCAAACTACAGAGACAGCAAGT
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CDS seq | ATGGCGGTGGAGGAGGTTCTTGATGGCGCCGCGCCGATGCTGTCGTCGTCGCCGGCGGCGAGCGGCGAGGAGGTGGGGGCGCGGAAGCCGCAGCAACGGTGCGGCGGCGCCGAGGGGTGGTCCAAGCGGAAGCGCTCGAGGCGGCGCCACCGCGACCGCGCCGCTGCGCCGCCGCCTCACGGTTCGGAGGAGGAGCACCTCGCGCTCAGCCTCCTCATGCTGGCGCGCGGCCACCGCGACCCCTCGCCGGCGCCGCAGGAGCAGCACGGGTGCTCCGTGTGCGGCAGGGTGTTCTCGTCCTACCAGGCGCTCGGCGGCCACAAGACGAGCCACCGCCCCAGGACGCCGCCGACGATGGCGGCCGTTGTCGTCGTAGACGAGCCGGCGGCGACGACGGCCTCGCCGGCCGCGTCCTCGTCCAATTCCGGCTCCGGCAGCGGCGGCGGCGGCGGAAACAAGGTGCACGAGTGCTCCGTGTGCAAGAAGACGTTCCCGACGGGGCAGGCGCTGGGCGGGCACAAGCGGTGCCACTACGAGGGCCCGATCGGAAGCGGCGGCGGCGCCGCTGTCGCCGGCCGCGGGTTCGATCTGAACCTGCCGGCGGTGGCGCTGCCGGACATCATGACGGAGCGGTGCTTGCCGGCGGCGGCCGAGGAGGAGGAGGTGCTCAGCCCGCTTGCCAGCTTCAAGAAGCCAAGGCTAATGATCCCTGCTTAA
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Protein seq | MAVEEVLDGAAPMLSSSPAASGEEVGARKPQQRCGGAEGWSKRKRSRRRHRDRAAAPPPHGSEEEHLALSLLMLARGHRDPSPAPQEQHGCSVCGRVFSSYQALGGHKTSHRPRTPPTMAAVVVVDEPAATTASPAASSSNSGSGSGGGGGNKVHECSVCKKTFPTGQALGGHKRCHYEGPIGSGGGAAVAGRGFDLNLPAVALPDIMTERCLPAAAEEEEVLSPLASFKKPRLMIPA |
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Function | Zinc finger protein 1 [UniProtKB/Swiss-Prot:Q42430] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsIR64_03g0025560 | OsIR64_03g0025560.01 | Chr03 | 25084315 | 25085523 | - | NAM | ||
CDS seq | ATGGCGGTGGAGGAGGTTCTTGATGGCGCCGCGCCGATGCTGTCGTCGTCGCCGGCGGCGAGCGGCGAGGAGGTGGGGGCGCGGAAGCCGCAGCAACGGTGCGGCGGCGCCGAGGGGTGGTCCAAGCGGAAGCGCTCGAGGCGGCGCCACCGCGACCGCGCCGCTGCGCCGCCGCCTCACGGTTCGGAGGAGGAGCACCTCGCGCTCAGCCTCCTCATGCTGGCGCGCGGCCACCGCGACCCCTCGCCGGCGCCGCAGGAGCAGCACGGGTGCTCCGTGTGCGGCAGGGTGTTCTCGTCCTACCAGGCGCTCGGCGGCCACAAGACGAGCCACCGCCCCAGGACGCCGCCGACGATGGCGGCCGTTGTCGTCGTAGACGAGCCGGCGGCGACGACGGCCTCGCCGGCCGCGTCCTCGTCCAATTCCGGCTCCGGCAGCGGCGGCGGCGGCGGAAACAAGGTGCACGAGTGCTCCGTGTGCAAGAAGACGTTCCCGACGGGGCAGGCGCTGGGCGGGCACAAGCGGTGCCACTACGAGGGCCCGATCGGAAGCGGCGGCGGCGCCGCTGTCGCCGGCCGCGGGTTCGATCTGAACCTGCCGGCGGTGGCGCTGCCGGACATCATGACGGAGCGGTGCTTGCCGGCGGCGGCCGAGGAGGAGGAGGTGCTCAGCCCGCTTGCCAGCTTCAAGAAGCCAAGGCTAATGATCCCTGCTTAA
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Protein seq | MAVEEVLDGAAPMLSSSPAASGEEVGARKPQQRCGGAEGWSKRKRSRRRHRDRAAAPPPHGSEEEHLALSLLMLARGHRDPSPAPQEQHGCSVCGRVFSSYQALGGHKTSHRPRTPPTMAAVVVVDEPAATTASPAASSSNSGSGSGGGGGNKVHECSVCKKTFPTGQALGGHKRCHYEGPIGSGGGAAVAGRGFDLNLPAVALPDIMTERCLPAAAEEEEVLSPLASFKKPRLMIPA
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.0 | 0.265339 | 0.0 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
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Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0610400 | RBH | 0.232412 | 0.239136 | 1.137972 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g41390 | RBH | 0.135997 | 0.139172 | 0.253475 |
Nipponbare | IRGSP 1.0 | RAP-db | Os03g0610400 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0026160 | RBH | 0.0 | 0.0 | 0.524571 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0025910 | RBH | 0.106257 | 0.0 | 0.262141 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0025960 | RBH | 0.0 | 1.844053 | 1.068080 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0025990 | RBH | 0.0 | 0.048789 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0025780 | RBH | 0.865868 | 2.846700 | 1.790045 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0404300 | RBH | 1.2076885 | 6.353846 | 2.244121 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0018050 | RBH | 0.0 | 0.301064 | 0.045308 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0409000 | RBH | 2.224367 | 11.735461 | 0.289161 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0025820 | RBH | 0.0 | 0.0 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0025840 | RBH | 0.0 | 4.997577 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0025950 | RBH | 0.0 | 0.0 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0025700 | RBH | 0.0 | 0.0 | 0.0 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0025600 | RBH | 0.0 | 0.0 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G025680 | RBH | 0.0 | 0.706441 | 0.062199 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0025660 | RBH | 0.0 | 3.269683 | 1.296302 |