Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g44970 | OGI:02077090 | 1/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:27238657-27240720 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAACACATGCCTTGCTCCATTAATTCAATGAAACTAGAACCAGGATGTTTCTTTAACCCACTTAAATTAGCTCTGGCCCTTGTATTGGTAAATTCATTCCACTGCCCTTCCTGAGCATACACTTCTGAAATCAGAGCATAAATACCTGGTTTCTGTGGTCCATGCTCAAGGAGCTCTTTGCTAATAGCAAGTGCCAGTTGTGTATTTCTATGCGTTCTGCAAGCAGAGATCAAAACACAAAATATAGTGGATTTATCCTTCAAGGTAGATAGCTTTATAAATTTGTATCCATCTTCCAGATGCCCAGCACGACCCAATAAATCAACCATGCAACCATAATGCTCTTCCTGTGGAAGAACTGAATATACTGAGGTCATGGAATTGAACATACGCCAACCATCCTTGACAAGACCAGCATGGCTGCAAGCAGTAAGCACAGTAGAGAATGTTAACTCATCAGGCTGAATGTTTTCTTCTTCCATTTGCTTAAACATTTCAAGCATATTAATATAGAATCCATGCATCGCATAAGCACTGATAATTGCATTCCAAGTATCCAAGTTTCTGTATTCCAAACTAAAGAACAAACCTACTGACAAATCCAGTCTTCCACATTTGGCATATGCACTTATCAATGAATTTGCAGTAATCTTATCTTTCTCTAACAGGGAACGGTAAACAAAACAATGGATTTGTTTTAGACCATTTAGATGGCCAAGCTCAGAGACAGCTTGAACAGCAGTTACAAGAGACATGGAATCAGGTTTCTCCCCATGTTTCTGCATCAAGTGAAATAATTGAACCACCTCATCTCCATGTCCATAGGGTAAGCAACCCTTCATCATGGCTGTCCATGAAACCAAGCTTTTCTGTTCCAGTAAATCAAATATAACCCTTGCTGCTGCAGGTTTTCCGCAAACTGAGTACATATAAAGAATATGATTTTCAACGTCACCATCCGAACAAAACCCATGCCTAATCCCAAATCCATGGATCCACCTCCCTCTCACTAAATCTCTTTGATCAGCAAAAGCAGCAAGCAGACTAAGAACAGTTGCAAAATCTGGAACAATACCTTCTGCCATCATGTAATTGAGTAAGGAGGTGGCCTCATTGGCCATGCCGTTATGTAGGTAACCGTACATCATTGCATTATAGGAGACTGCATCTTTAACAATCAGTTGATTAAAGAGATGTCTTGATATCGTGATTTTTTTGCATTTGGAGTACACCTTAACAAGAGCAGTCGCCAAAACAACATCCAGAGGTATATATCTTCTTATTAAGTAGGTATGAATACTAGCAGCATAGCCGAAATAGCATACCTCAACACAAGCAGAAATCACGTTTGCGAAGGTGACAGAATCTGGAGTTATTTTATGCTCATGCAGCATCACAGACAAATAGTGGATTGCATCAAAACTCTGTCCAGCTCTAGTAAGACCAGAAAGCATAGCATTCCATGAAGCTGCAGTTCCCTTTGAATTCTGTAAAGTAGCAACTGCTGATTGATAAGCTCCACATCGAGTATACAAGTTCACAATGCAGGTCTCTAGAATATAATCTGAGACAACAAGTGCTCTCCTTATGGAATAGCAATGGAGTGATTTGCCCTCTTTAAGTGCTCCCAAATTCCCAGCTATTTGCAGTAAGCTTATCATAGTCACACGGTTTACTTCCAAGTTGCCCTGCAGCATATCAATGGCAATATCAAATGCATTCCATGCAACTGAATCCACAATTTCTGAATAACCAGTGATCATCGAAGTGTAAGCAACAACGTCCTTGTCAATGATCTCTTTAAACACTCCCTGTGAATCGTCCATCCTATGAAGCTTGGAGTACAACACAATGAGGGAGGAACCGATGAATTTATCCCCAGACAGACCAAATTTAAGTGAATCCACATGCATTCCTTTACCCAAGTACAGATTCTCAAGCTCAGTGCAGCTTTTCAAAACAAAAGTAATAGTTTTCCCATCCAAACCAATCTGGTGTAATTTCAACCTTTTGTACAAGATAATAACTTCCTCTGGATAACCAGCTCTAAAATAATCAACCAT
More
|
||||||||||
| CDS seq | ATGGTTGATTATTTTAGAGCTGGTTATCCAGAGGAAGTTATTATCTTGTACAAAAGGTTGAAATTACACCAGATTGGTTTGGATGGGAAAACTATTACTTTTGTTTTGAAAAGCTGCACTGAGCTTGAGAATCTGTACTTGGGTAAAGGAATGCATGTGGATTCACTTAAATTTGGTCTGTCTGGGGATAAATTCATCGGTTCCTCCCTCATTGTGTTGTACTCCAAGCTTCATAGGATGGACGATTCACAGGGAGTGTTTAAAGAGATCATTGACAAGGACGTTGTTGCTTACACTTCGATGATCACTGGTTATTCAGAAATTGTGGATTCAGTTGCATGGAATGCATTTGATATTGCCATTGATATGCTGCAGGGCAACTTGGAAGTAAACCGTGTGACTATGATAAGCTTACTGCAAATAGCTGGGAATTTGGGAGCACTTAAAGAGGGCAAATCACTCCATTGCTATTCCATAAGGAGAGCACTTGTTGTCTCAGATTATATTCTAGAGACCTGCATTGTGAACTTGTATACTCGATGTGGAGCTTATCAATCAGCAGTTGCTACTTTACAGAATTCAAAGGGAACTGCAGCTTCATGGAATGCTATGCTTTCTGGTCTTACTAGAGCTGGACAGAGTTTTGATGCAATCCACTATTTGTCTGTGATGCTGCATGAGCATAAAATAACTCCAGATTCTGTCACCTTCGCAAACGTGATTTCTGCTTGTGTTGAGGTATGCTATTTCGGCTATGCTGCTAGTATTCATACCTACTTAATAAGAAGATATATACCTCTGGATGTTGTTTTGGCGACTGCTCTTGTTAAGGTGTACTCCAAATGCAAAAAAATCACGATATCAAGACATCTCTTTAATCAACTGATTGTTAAAGATGCAGTCTCCTATAATGCAATGATGTACGGTTACCTACATAACGGCATGGCCAATGAGGCCACCTCCTTACTCAATTACATGATGGCAGAAGGTATTGTTCCAGATTTTGCAACTGTTCTTAGTCTGCTTGCTGCTTTTGCTGATCAAAGAGATTTAGTGAGAGGGAGGTGGATCCATGGATTTGGGATTAGGCATGGGTTTTGTTCGGATGGTGACGTTGAAAATCATATTCTTTATATGTACTCAGTTTGCGGAAAACCTGCAGCAGCAAGGGTTATATTTGATTTACTGGAACAGAAAAGCTTGGTTTCATGGACAGCCATGATGAAGGGTTGCTTACCCTATGGACATGGAGATGAGGTGGTTCAATTATTTCACTTGATGCAGAAACATGGGGAGAAACCTGATTCCATGTCTCTTGTAACTGCTGTTCAAGCTGTCTCTGAGCTTGGCCATCTAAATGGTCTAAAACAAATCCATTGTTTTGTTTACCGTTCCCTGTTAGAGAAAGATAAGATTACTGCAAATTCATTGATAAGTGCATATGCCAAATGTGGAAGACTGGATTTGTCAGTAGGTTTGTTCTTTAGTTTGGAATACAGAAACTTGGATACTTGGAATGCAATTATCAGTGCTTATGCGATGCATGGATTCTATATTAATATGCTTGAAATGTTTAAGCAAATGGAAGAAGAAAACATTCAGCCTGATGAGTTAACATTCTCTACTGTGCTTACTGCTTGCAGCCATGCTGGTCTTGTCAAGGATGGTTGGCGTATGTTCAATTCCATGACCTCAGTATATTCAGTTCTTCCACAGGAAGAGCATTATGGTTGCATGGTTGATTTATTGGGTCGTGCTGGGCATCTGGAAGATGGATACAAATTTATAAAGCTATCTACCTTGAAGGATAAATCCACTATATTTTGTGTTTTGATCTCTGCTTGCAGAACGCATAGAAATACACAACTGGCACTTGCTATTAGCAAAGAGCTCCTTGAGCATGGACCACAGAAACCAGGTATTTATGCTCTGATTTCAGAAGTGTATGCTCAGGAAGGGCAGTGGAATGAATTTACCAATACAAGGGCCAGAGCTAATTTAAGTGGGTTAAAGAAACATCCTGGTTCTAGTTTCATTGAATTAATGGAGCAAGGCATGTGTTAG
More
|
||||||||||
| Protein seq | MVDYFRAGYPEEVIILYKRLKLHQIGLDGKTITFVLKSCTELENLYLGKGMHVDSLKFGLSGDKFIGSSLIVLYSKLHRMDDSQGVFKEIIDKDVVAYTSMITGYSEIVDSVAWNAFDIAIDMLQGNLEVNRVTMISLLQIAGNLGALKEGKSLHCYSIRRALVVSDYILETCIVNLYTRCGAYQSAVATLQNSKGTAASWNAMLSGLTRAGQSFDAIHYLSVMLHEHKITPDSVTFANVISACVEVCYFGYAASIHTYLIRRYIPLDVVLATALVKVYSKCKKITISRHLFNQLIVKDAVSYNAMMYGYLHNGMANEATSLLNYMMAEGIVPDFATVLSLLAAFADQRDLVRGRWIHGFGIRHGFCSDGDVENHILYMYSVCGKPAAARVIFDLLEQKSLVSWTAMMKGCLPYGHGDEVVQLFHLMQKHGEKPDSMSLVTAVQAVSELGHLNGLKQIHCFVYRSLLEKDKITANSLISAYAKCGRLDLSVGLFFSLEYRNLDTWNAIISAYAMHGFYINMLEMFKQMEEENIQPDELTFSTVLTACSHAGLVKDGWRMFNSMTSVYSVLPQEEHYGCMVDLLGRAGHLEDGYKFIKLSTLKDKSTIFCVLISACRTHRNTQLALAISKELLEHGPQKPGIYALISEVYAQEGQWNEFTNTRARANLSGLKKHPGSSFIELMEQGMC |
||||||||||
| Function | Pentatricopeptide repeat-containing protein At4g21300 [UniProtKB/Swiss-Prot:Q9STE1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g44970 | LOC_Os02g44970.1 | Chr02 | 27238657 | 27240720 | - | MSU_osa1r7 | ||
| CDS seq | ATGGTTGATTATTTTAGAGCTGGTTATCCAGAGGAAGTTATTATCTTGTACAAAAGGTTGAAATTACACCAGATTGGTTTGGATGGGAAAACTATTACTTTTGTTTTGAAAAGCTGCACTGAGCTTGAGAATCTGTACTTGGGTAAAGGAATGCATGTGGATTCACTTAAATTTGGTCTGTCTGGGGATAAATTCATCGGTTCCTCCCTCATTGTGTTGTACTCCAAGCTTCATAGGATGGACGATTCACAGGGAGTGTTTAAAGAGATCATTGACAAGGACGTTGTTGCTTACACTTCGATGATCACTGGTTATTCAGAAATTGTGGATTCAGTTGCATGGAATGCATTTGATATTGCCATTGATATGCTGCAGGGCAACTTGGAAGTAAACCGTGTGACTATGATAAGCTTACTGCAAATAGCTGGGAATTTGGGAGCACTTAAAGAGGGCAAATCACTCCATTGCTATTCCATAAGGAGAGCACTTGTTGTCTCAGATTATATTCTAGAGACCTGCATTGTGAACTTGTATACTCGATGTGGAGCTTATCAATCAGCAGTTGCTACTTTACAGAATTCAAAGGGAACTGCAGCTTCATGGAATGCTATGCTTTCTGGTCTTACTAGAGCTGGACAGAGTTTTGATGCAATCCACTATTTGTCTGTGATGCTGCATGAGCATAAAATAACTCCAGATTCTGTCACCTTCGCAAACGTGATTTCTGCTTGTGTTGAGGTATGCTATTTCGGCTATGCTGCTAGTATTCATACCTACTTAATAAGAAGATATATACCTCTGGATGTTGTTTTGGCGACTGCTCTTGTTAAGGTGTACTCCAAATGCAAAAAAATCACGATATCAAGACATCTCTTTAATCAACTGATTGTTAAAGATGCAGTCTCCTATAATGCAATGATGTACGGTTACCTACATAACGGCATGGCCAATGAGGCCACCTCCTTACTCAATTACATGATGGCAGAAGGTATTGTTCCAGATTTTGCAACTGTTCTTAGTCTGCTTGCTGCTTTTGCTGATCAAAGAGATTTAGTGAGAGGGAGGTGGATCCATGGATTTGGGATTAGGCATGGGTTTTGTTCGGATGGTGACGTTGAAAATCATATTCTTTATATGTACTCAGTTTGCGGAAAACCTGCAGCAGCAAGGGTTATATTTGATTTACTGGAACAGAAAAGCTTGGTTTCATGGACAGCCATGATGAAGGGTTGCTTACCCTATGGACATGGAGATGAGGTGGTTCAATTATTTCACTTGATGCAGAAACATGGGGAGAAACCTGATTCCATGTCTCTTGTAACTGCTGTTCAAGCTGTCTCTGAGCTTGGCCATCTAAATGGTCTAAAACAAATCCATTGTTTTGTTTACCGTTCCCTGTTAGAGAAAGATAAGATTACTGCAAATTCATTGATAAGTGCATATGCCAAATGTGGAAGACTGGATTTGTCAGTAGGTTTGTTCTTTAGTTTGGAATACAGAAACTTGGATACTTGGAATGCAATTATCAGTGCTTATGCGATGCATGGATTCTATATTAATATGCTTGAAATGTTTAAGCAAATGGAAGAAGAAAACATTCAGCCTGATGAGTTAACATTCTCTACTGTGCTTACTGCTTGCAGCCATGCTGGTCTTGTCAAGGATGGTTGGCGTATGTTCAATTCCATGACCTCAGTATATTCAGTTCTTCCACAGGAAGAGCATTATGGTTGCATGGTTGATTTATTGGGTCGTGCTGGGCATCTGGAAGATGGATACAAATTTATAAAGCTATCTACCTTGAAGGATAAATCCACTATATTTTGTGTTTTGATCTCTGCTTGCAGAACGCATAGAAATACACAACTGGCACTTGCTATTAGCAAAGAGCTCCTTGAGCATGGACCACAGAAACCAGGTATTTATGCTCTGATTTCAGAAGTGTATGCTCAGGAAGGGCAGTGGAATGAATTTACCAATACAAGGGCCAGAGCTAATTTAAGTGGGTTAAAGAAACATCCTGGTTCTAGTTTCATTGAATTAATGGAGCAAGGCATGTGTTAG
More
|
|||||||
| Protein seq | MVDYFRAGYPEEVIILYKRLKLHQIGLDGKTITFVLKSCTELENLYLGKGMHVDSLKFGLSGDKFIGSSLIVLYSKLHRMDDSQGVFKEIIDKDVVAYTSMITGYSEIVDSVAWNAFDIAIDMLQGNLEVNRVTMISLLQIAGNLGALKEGKSLHCYSIRRALVVSDYILETCIVNLYTRCGAYQSAVATLQNSKGTAASWNAMLSGLTRAGQSFDAIHYLSVMLHEHKITPDSVTFANVISACVEVCYFGYAASIHTYLIRRYIPLDVVLATALVKVYSKCKKITISRHLFNQLIVKDAVSYNAMMYGYLHNGMANEATSLLNYMMAEGIVPDFATVLSLLAAFADQRDLVRGRWIHGFGIRHGFCSDGDVENHILYMYSVCGKPAAARVIFDLLEQKSLVSWTAMMKGCLPYGHGDEVVQLFHLMQKHGEKPDSMSLVTAVQAVSELGHLNGLKQIHCFVYRSLLEKDKITANSLISAYAKCGRLDLSVGLFFSLEYRNLDTWNAIISAYAMHGFYINMLEMFKQMEEENIQPDELTFSTVLTACSHAGLVKDGWRMFNSMTSVYSVLPQEEHYGCMVDLLGRAGHLEDGYKFIKLSTLKDKSTIFCVLISACRTHRNTQLALAISKELLEHGPQKPGIYALISEVYAQEGQWNEFTNTRARANLSGLKKHPGSSFIELMEQGMC
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.461674 | 0.265027 | 0.219815 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0670700 | RBH | 0.659337 | 0.605143 | 0.986855 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g43430 | SBH | 0.249681 | 0.378304 | 0.099572 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0670700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0028480 | SBH | 0.149535 | 0.0 | 2.531000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0028570 | SBH | 0.245462 | 0.458988 | 0.433302 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0028410 | SBH | 0.359493 | 0.000000 | 0.748973 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0028030 | SBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0025100 | SBH | 1.616758 | 0.0 | 1.064743 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0442500 | SBH | 0.3443265 | 1.124623 | 2.59598 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0032260 | SBH | 0.403450 | 0.000000 | 0.120150 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0470400 | SBH | 0.295882 | 0.3896925 | 1.9616845 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0028310 | SBH | 0.070716 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0025030 | SBH | 0.348812 | 1.865051 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0025340 | SBH | 1.478798 | 3.963737 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0025240 | SBH | 0.081226 | 0.149364 | 0.216770 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0024760 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G028450 | SBH | 0.267663 | 0.0 | 0.701373 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0028220 | SBH | 0.539291 | 1.898682 | 0.228213 |
