Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_02g0028030 | OGI:02077100 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr02:27107186-27110482 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAACACATGCCTTGCTCCATTAATTCAATGAAACTAGAACCAGGATGTTTCTTTAACCCACTTAAATTAGCTCTGGCCCTTGTATTGGTAAATTCATTCCACTGCCCTTCCTGAGCATACACTTCTGAAATCAGAGCATAAATACCTGGTTTCTGTGGTCCATGCTCAAGGAGCTCTTTGCTAATAGCAAGTGCCAGTTGTGTATTTCTATGCGTTCTGCAAGCAGAGATCAAAACACAAAATATAGTGGATTTATCCTTCAAGGTAGATAGCTTTATAAATTTGTATCCATCTTCCAGATGCCCAGCACGACCCAATAAATCAACCATGCAACCATAATGCTCTTCCTGTGGAAGAACTGAATATACTGAGGTCATGGAATTGAACATACGCCAACCATCCTTGACAAGACCAGCATGGCTGCAAGCAGTAAGCACAGTAGAGAATGTTAACTCATCAGGCTGAATGTTTTCTTCTTCCATTTGCTTAAACATTTCAAGCATATTAATATAGAATCCATGCATCGCATAAGCACTGATAATTGCATTCCAAGTATCCAAGTTTCTGTATTCCAAACTAAAGAACAAACCTACTGACAAATCCAGTCTTCCACATTTGGCATATGCACTTATCAATGAATTTGCAGTAATCTTATCTTTCTCTAACAGGGAACGGTAAACAAAACAATGGATTTGTTTTAGACCATTTAGATGGCCAAGCTCAGAGACAGCTTGAACAGCAGTTACAAGAGACATGGAATCAGGTTTCTCCCCATGTTTCTGCATCAAGTGAAATAATTGAACCACCTCATCTCCATGTCCATAGGGTAAGCAACCCTTCATCATGGCTGTCCATGAAACCAAGCTTTTCTGTTCCAGTAAATCAAATATAACCCTTGCTGCTGCAGGTTTTCCGCAAACTGAGTACATATAAAGAATATGATTTTCAACGTCACCATCCGAACAAAACCCATGCCTAATCCCAAATCCATGGATCCACCTCCCTCTCACTAAATCTCTTTGATCAGCAAAAGCAGCAAGCAGACTAAGAACAGTTGCAAAATCTGGAACAATACCTTCTGCCATCATGTAATTGAGTAAGGAGGTGGCCTCATTGGCCATGCCGTTATGTAGGTAACCGTACATCATTGCATTATAGGAGACTGCATCTTTAACAATCAGTTGATTAAAGAGATGTCTTGATATCGTGATTTTTTTGCATTTGGAGTACACCTTAACAAGAGCAGTCGCCAAAACAACATCCAGAGGTATATATCTTCTTATTAAGTAGGTATGAATACTAGCAGCATAGCCGAAATAGCATACCTCAACACAAGCAGAAATCACGTTTGCGAAGGTGACAGAATCTGGAGTTATTTTATGCTCATGCAGCATCACAGACAAATAGTGGATTGCATCAAAACTCTGTCCAGCTCTAGTAAGACCAGAAAGCATAGCATTCCATGAAGCTGCAGTTCCCTTTGAATTCTGTAAAGTAGCAACTGCTGATTGATAAGCTCCACATCGAGTATACAAGTTCACAATGCAGGTCTCTAGAATATAATCTGAGACAACAAGTGCTCTCCTTATGGAATAGCAATGGAGTGATTTGCCCTCTTTAAGTGCTCCCAAATTCCCAGCTATTTGCAGTAAGCTTATCATAGTCACACGGTTTACTTCCAAGTTGCCCTGCAGCATATCAATGGCAATATCAAATGCATTCCATGCAACTGAATCCACAATTTCTGAATAACCAGTGATCATCGAAGTGTAAGCAACAACGTCCTTGTCAATGATCTCTTTAAACACTCCCTGTGAATCGTCCATCCTATGAAGCTTGGAGTACAACACAATGAGGGAGGAACCGATGAATTTATCCCCAGACAGACCAAATTTAAGTGAATCCACATGCATTCCTTTACCCAAGTACAGATTCTCAAGCTCAGTGCAGCTTTTCAAAACAAAAGTAATAGTTTTCCCATCCAAACCAATCTGGTGTAATTTCAACCTTTTGTACAAGATAATAACTTCCTCTGGATAACCAGCTCTAAAATAATCAACCATGGTTGAATTCCACAGGGAAAGCTCATCATTTACAATTTTCTGGAAAACAAGTCTTGACTCAGACAGGGCCCCTAAATTAGCATAACAACTCACAATCTTAGAGCCAAGAATCACATCCCAGCACAATCCATGTGTGAAAACATGACAATGGATCTTCTTTAGAGACCTAATATCTGCACAGCCTTGGAACAATGGAGCAAACTTGTCAAAATTAAGTATCTTATTAGAGCATGAATTTGCATCGGCAGTGGATGCTGATAGTCTCCAACGCAGCTTCAGCACTGCAATTTTATCAAACTTTGAACTAGTGTTTCCAGCTAAATTCCCCTCAAAAGAATTGGTAGCATCATCATGGTTGTTGACGCAAGAAAAACAAAAATAGGTAACTAATTGACTCCGAATTCATAGACATACGATGACAGTTCAGTTAAATGAGCCTACAATATAATAGTCCCAAGCACACATGTGTGAGTCATGTGCAATGATTACATCATGTGTGCTTGGGACTATTATATTGTAGACTCATTTAACTGAACTGTCCAATTGTGGTTGGTGACATGGTTCAGGAGTCTAACGGTGTACCGGAAACAGATATAGTGTATATCTGGAAGTGGAGTCTATAAATAGGTCCCTACCCTCCAGCCTCATAATGCATTGTGAGCGGAACAACGGAAAAGGAATAGAGGGTAGGCCGGATAGACCCACGTAAACCTAACAATATTTGCTTTTCTTGCACCTCCAAGGATAGACTATTCAACTAAACCTGATCAACAGCGGAACACATACAATCAGTGTACTTTAGTACAACAGCACTAAACTTGATAGCAGATCACATTAAATTAAGCGATAATCCCAGTTATGGCATACACAGCAGAGGAGTGAAGCCACAATCTCTCCAGGACATTGCCACAGGTAATGAATATGAAATACTACCGCAATCTCGCCGGTGCTACCAAATAAACCACCACCTAATCAGAACAAATAGCCACATCATCAAGCAGTCATCATGTAAAAACGAGAAAATGGGAAAACTGACCACCAGCCGAAATCTTTTTCAGAGGTTCATTCCGTGAAAGAACCGGAGTAGGAGGAGGAGGCCTCGGGGTGGCCGCCGGCAAGCCGACCTCCGGAGGGACGGCGCCAGGAACAGTGGAGGAGGGGCGCGCGCGTGGGGGAGGCGCGGGTGGTGCGGCCGTGCGAGGGGGCGGCGCTGCCGCTGGCTAGTGGAGACAT
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| CDS seq | ATGTCTCCACTAGCCAGCGGCAGCGCCGCCCCCTCGCACGGCCGCACCACCCGCGCCTCCCCCACGCGCGCGCCCCTCCTCCACTGTTCCTGGCGCCGTCCCTCCGGAGGTCGGCTTGCCGGCGGCCACCCCGAGGCCTCCTCCTCCTACTCCGCTGGAAACACTAGTTCAAAGTTTGATAAAATTGCAGTGCTGAAGCTGCGTTGGAGACTATCAGCATCCACTGCCGATGCAAATTCATGCTCTAATAAGATACTTAATTTTGACAAGTTTGCTCCATTGTTCCAAGGCTGTGCAGATATTAGGTCTCTAAAGAAGATCCATTGTCATGTTTTCACACATGGATTGTGCTGGGATGTGATTCTTGGCTCTAAGATTGTGAGTTGTTATGCTAATTTAGGGGCCCTGTCTGAGTCAAGACTTGTTTTCCAGAAAATTGTAAATGATGAGCTTTCCCTGTGGAATTCAACCATGGTTGATTATTTTAGAGCTGGTTATCCAGAGGAACTTCATAGGATGGACGATTCACAGGGAGTGTTTAAAGAGATCATTGACAAGGACGTTGTTGCTTACACTTCGATGATCACTGGTTATTCAGAAATTGTGGATTCAGTTGCATGGAATGCATTTGATATTGCCATTGATATGCTGCAGGGCAACTTGGAAGTAAACCGTGTGACTATGATAAGCTTACTGCAAATAGCTGGGAATTTGGGAGCACTTAAAGAGGGCAAATCACTCCATTGCTATTCCATAAGGAGAGCACTTGTTGTCTCAGATTATATTCTAGAGACCTGCATTGTGAACTTGTATACTCGATGTGGAGCTTATCAATCAGCAGTTGCTACTTTACAGAATTCAAAGGGAACTGCAGCTTCATGGAATGCTATGCTTTCTGGTCTTACTAGAGCTGGACAGAGTTTTGATGCAATCCACTATTTGTCTGTGATGCTGCATGAGCATAAAATAACTCCAGATTCTGTCACCTTCGCAAACGTGATTTCTGCTTGTGTTGAGGTATGCTATTTCGGCTATGCTGCTAGTATTCATACCTACTTAATAAGAAGATATATACCTCTGGATGTTGTTTTGGCGACTGCTCTTGTTAAGGTGTACTCCAAATGCAAAAAAATCACGATATCAAGACATCTCTTTAATCAACTGATTGTTAAAGATGCAGTCTCCTATAATGCAATGATGTACGGTTACCTACATAACGGCATGGCCAATGAGGCCACCTCCTTACTCAATTACATGATGGCAGAAGGTATTGTTCCAGATTTTGCAACTGTTCTTAGTCTGCTTGCTGCTTTTGCTGATCAAAGAGATTTAGTGAGAGGGAGGTGGATCCATGGATTTGGGATTAGGCATGGGTTTTGTTCGGATGGTGACGTTGAAAATCATATTCTTTATATGTACTCAGTTTGCGGAAAACCTGCAGCAGCAAGGGTTATATTTGATTTACTGGAACAGAAAAGCTTGGTTTCATGGACAGCCATGATGAAGGGTTGCTTACCCTATGGACATGGAGATGAGGTGGTTCAATTATTTCACTTGATGCAGAAACATGGGGAGAAACCTGATTCCATGTCTCTTGTAACTGCTGTTCAAGCTGTCTCTGAGCTTGGCCATCTAAATGGTCTAAAACAAATCCATTGTTTTGTTTACCGTTCCCTGTTAGAGAAAGATAAGATTACTGCAAATTCATTGATAAGTGCATATGCCAAATGTGGAAGACTGGATTTGTCAGTAGGTTTGTTCTTTAGTTTGGAATACAGAAACTTGGATACTTGGAATGCAATTATCAGTGCTTATGCGATGCATGGATTCTATATTAATATGCTTGAAATGTTTAAGCAAATGGAAGAAGAAAACATTCAGCCTGATGAGTTAACATTCTCTACTGTGCTTACTGCTTGCAGCCATGCTGGTCTTGTCAAGGATGGTTGGCGTATGTTCAATTCCATGACCTCAGTATATTCAGTTCTTCCACAGGAAGAGCATTATGGTTGCATGGTTGATTTATTGGGTCGTGCTGGGCATCTGGAAGATGGATACAAATTTATAAAGCTATCTACCTTGAAGGATAAATCCACTATATTTTGTGTTTTGATCTCTGCTTGCAGAACGCATAGAAATACACAACTGGCACTTGCTATTAGCAAAGAGCTCCTTGAGCATGGACCACAGAAACCAGGTATTTATGCTCTGATTTCAGAAGTGTATGCTCAGGAAGGGCAGTGGAATGAATTTACCAATACAAGGGCCAGAGCTAATTTAAGTGGGTTAAAGAAACATCCTGGTTCTAGTTTCATTGAATTAATGGAGCAAGGCATGTGTTAG
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| Protein seq | MSPLASGSAAPSHGRTTRASPTRAPLLHCSWRRPSGGRLAGGHPEASSSYSAGNTSSKFDKIAVLKLRWRLSASTADANSCSNKILNFDKFAPLFQGCADIRSLKKIHCHVFTHGLCWDVILGSKIVSCYANLGALSESRLVFQKIVNDELSLWNSTMVDYFRAGYPEELHRMDDSQGVFKEIIDKDVVAYTSMITGYSEIVDSVAWNAFDIAIDMLQGNLEVNRVTMISLLQIAGNLGALKEGKSLHCYSIRRALVVSDYILETCIVNLYTRCGAYQSAVATLQNSKGTAASWNAMLSGLTRAGQSFDAIHYLSVMLHEHKITPDSVTFANVISACVEVCYFGYAASIHTYLIRRYIPLDVVLATALVKVYSKCKKITISRHLFNQLIVKDAVSYNAMMYGYLHNGMANEATSLLNYMMAEGIVPDFATVLSLLAAFADQRDLVRGRWIHGFGIRHGFCSDGDVENHILYMYSVCGKPAAARVIFDLLEQKSLVSWTAMMKGCLPYGHGDEVVQLFHLMQKHGEKPDSMSLVTAVQAVSELGHLNGLKQIHCFVYRSLLEKDKITANSLISAYAKCGRLDLSVGLFFSLEYRNLDTWNAIISAYAMHGFYINMLEMFKQMEEENIQPDELTFSTVLTACSHAGLVKDGWRMFNSMTSVYSVLPQEEHYGCMVDLLGRAGHLEDGYKFIKLSTLKDKSTIFCVLISACRTHRNTQLALAISKELLEHGPQKPGIYALISEVYAQEGQWNEFTNTRARANLSGLKKHPGSSFIELMEQGMC |
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| Function | Pentatricopeptide repeat-containing protein At4g21300 [UniProtKB/Swiss-Prot:Q9STE1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_02g0028030 | OsARC_02g0028030.01 | Chr02 | 27107186 | 27110482 | - | NAM | ||
| CDS seq | ATGTCTCCACTAGCCAGCGGCAGCGCCGCCCCCTCGCACGGCCGCACCACCCGCGCCTCCCCCACGCGCGCGCCCCTCCTCCACTGTTCCTGGCGCCGTCCCTCCGGAGGTCGGCTTGCCGGCGGCCACCCCGAGGCCTCCTCCTCCTACTCCGCTGGAAACACTAGTTCAAAGTTTGATAAAATTGCAGTGCTGAAGCTGCGTTGGAGACTATCAGCATCCACTGCCGATGCAAATTCATGCTCTAATAAGATACTTAATTTTGACAAGTTTGCTCCATTGTTCCAAGGCTGTGCAGATATTAGGTCTCTAAAGAAGATCCATTGTCATGTTTTCACACATGGATTGTGCTGGGATGTGATTCTTGGCTCTAAGATTGTGAGTTGTTATGCTAATTTAGGGGCCCTGTCTGAGTCAAGACTTGTTTTCCAGAAAATTGTAAATGATGAGCTTTCCCTGTGGAATTCAACCATGGTTGATTATTTTAGAGCTGGTTATCCAGAGGAACTTCATAGGATGGACGATTCACAGGGAGTGTTTAAAGAGATCATTGACAAGGACGTTGTTGCTTACACTTCGATGATCACTGGTTATTCAGAAATTGTGGATTCAGTTGCATGGAATGCATTTGATATTGCCATTGATATGCTGCAGGGCAACTTGGAAGTAAACCGTGTGACTATGATAAGCTTACTGCAAATAGCTGGGAATTTGGGAGCACTTAAAGAGGGCAAATCACTCCATTGCTATTCCATAAGGAGAGCACTTGTTGTCTCAGATTATATTCTAGAGACCTGCATTGTGAACTTGTATACTCGATGTGGAGCTTATCAATCAGCAGTTGCTACTTTACAGAATTCAAAGGGAACTGCAGCTTCATGGAATGCTATGCTTTCTGGTCTTACTAGAGCTGGACAGAGTTTTGATGCAATCCACTATTTGTCTGTGATGCTGCATGAGCATAAAATAACTCCAGATTCTGTCACCTTCGCAAACGTGATTTCTGCTTGTGTTGAGGTATGCTATTTCGGCTATGCTGCTAGTATTCATACCTACTTAATAAGAAGATATATACCTCTGGATGTTGTTTTGGCGACTGCTCTTGTTAAGGTGTACTCCAAATGCAAAAAAATCACGATATCAAGACATCTCTTTAATCAACTGATTGTTAAAGATGCAGTCTCCTATAATGCAATGATGTACGGTTACCTACATAACGGCATGGCCAATGAGGCCACCTCCTTACTCAATTACATGATGGCAGAAGGTATTGTTCCAGATTTTGCAACTGTTCTTAGTCTGCTTGCTGCTTTTGCTGATCAAAGAGATTTAGTGAGAGGGAGGTGGATCCATGGATTTGGGATTAGGCATGGGTTTTGTTCGGATGGTGACGTTGAAAATCATATTCTTTATATGTACTCAGTTTGCGGAAAACCTGCAGCAGCAAGGGTTATATTTGATTTACTGGAACAGAAAAGCTTGGTTTCATGGACAGCCATGATGAAGGGTTGCTTACCCTATGGACATGGAGATGAGGTGGTTCAATTATTTCACTTGATGCAGAAACATGGGGAGAAACCTGATTCCATGTCTCTTGTAACTGCTGTTCAAGCTGTCTCTGAGCTTGGCCATCTAAATGGTCTAAAACAAATCCATTGTTTTGTTTACCGTTCCCTGTTAGAGAAAGATAAGATTACTGCAAATTCATTGATAAGTGCATATGCCAAATGTGGAAGACTGGATTTGTCAGTAGGTTTGTTCTTTAGTTTGGAATACAGAAACTTGGATACTTGGAATGCAATTATCAGTGCTTATGCGATGCATGGATTCTATATTAATATGCTTGAAATGTTTAAGCAAATGGAAGAAGAAAACATTCAGCCTGATGAGTTAACATTCTCTACTGTGCTTACTGCTTGCAGCCATGCTGGTCTTGTCAAGGATGGTTGGCGTATGTTCAATTCCATGACCTCAGTATATTCAGTTCTTCCACAGGAAGAGCATTATGGTTGCATGGTTGATTTATTGGGTCGTGCTGGGCATCTGGAAGATGGATACAAATTTATAAAGCTATCTACCTTGAAGGATAAATCCACTATATTTTGTGTTTTGATCTCTGCTTGCAGAACGCATAGAAATACACAACTGGCACTTGCTATTAGCAAAGAGCTCCTTGAGCATGGACCACAGAAACCAGGTATTTATGCTCTGATTTCAGAAGTGTATGCTCAGGAAGGGCAGTGGAATGAATTTACCAATACAAGGGCCAGAGCTAATTTAAGTGGGTTAAAGAAACATCCTGGTTCTAGTTTCATTGAATTAATGGAGCAAGGCATGTGTTAG
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| Protein seq | MSPLASGSAAPSHGRTTRASPTRAPLLHCSWRRPSGGRLAGGHPEASSSYSAGNTSSKFDKIAVLKLRWRLSASTADANSCSNKILNFDKFAPLFQGCADIRSLKKIHCHVFTHGLCWDVILGSKIVSCYANLGALSESRLVFQKIVNDELSLWNSTMVDYFRAGYPEELHRMDDSQGVFKEIIDKDVVAYTSMITGYSEIVDSVAWNAFDIAIDMLQGNLEVNRVTMISLLQIAGNLGALKEGKSLHCYSIRRALVVSDYILETCIVNLYTRCGAYQSAVATLQNSKGTAASWNAMLSGLTRAGQSFDAIHYLSVMLHEHKITPDSVTFANVISACVEVCYFGYAASIHTYLIRRYIPLDVVLATALVKVYSKCKKITISRHLFNQLIVKDAVSYNAMMYGYLHNGMANEATSLLNYMMAEGIVPDFATVLSLLAAFADQRDLVRGRWIHGFGIRHGFCSDGDVENHILYMYSVCGKPAAARVIFDLLEQKSLVSWTAMMKGCLPYGHGDEVVQLFHLMQKHGEKPDSMSLVTAVQAVSELGHLNGLKQIHCFVYRSLLEKDKITANSLISAYAKCGRLDLSVGLFFSLEYRNLDTWNAIISAYAMHGFYINMLEMFKQMEEENIQPDELTFSTVLTACSHAGLVKDGWRMFNSMTSVYSVLPQEEHYGCMVDLLGRAGHLEDGYKFIKLSTLKDKSTIFCVLISACRTHRNTQLALAISKELLEHGPQKPGIYALISEVYAQEGQWNEFTNTRARANLSGLKKHPGSSFIELMEQGMC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0670700 | RBH | 0.659337 | 0.605143 | 0.986855 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g44975 | RBH | 0.0 | 0.508943 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0670700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0028480 | RBH | 0.149535 | 0.0 | 2.531000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0028570 | RBH | 0.245462 | 0.458988 | 0.433302 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0028410 | RBH | 0.359493 | 0.000000 | 0.748973 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0025750 | SBH | 0.041961 | 0.046329 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0028170 | RBH | 2.993541 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0442500 | RBH | 0.3443265 | 1.124623 | 2.59598 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0027980 | RBH | 0.0 | 0.0 | 0.145383 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0470400 | RBH | 0.295882 | 0.3896925 | 1.9616845 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0028310 | RBH | 0.070716 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0028020 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0028320 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0028190 | RBH | 0.0 | 0.497776 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0027880 | RBH | 0.0 | 1.500017 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G028450 | RBH | 0.267663 | 0.0 | 0.701373 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0028220 | RBH | 0.539291 | 1.898682 | 0.228213 |
