Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
LOC_Os02g35750		OGI:02061510 \| 16/16			Nipponbare \| IRGSP 1.0 \| MSU			Chr02:21471731-21475633		Homologues MicroCollinearity RGI-JBrowse RGAP Ricevarmap2
Gene Symbol		WSL4, OsSTA65, STA65, OsWSL4
DNA seq		GTCGTCGCCACTGTCCCCCGTGCCCGATGGCCGCGCCCGCGCCCACAGCTTCGCCGCCGCCGCCGCCCGCCATGTCCGGCCTCCTCTCCTTCGCCTCGTCCCGCCCCTACCCTCCCCTCCCCGCGCCCAGACCCGCCGCCGCCGCCCCCAGGCCGCGCCTCCGCATAGCGGGTTCCGCCGCCGCGGCCCCCAACGCCGTGTCCCACCGGGCATCCTCCTCCTTCTCCTCCGGAGACCGCCTCCGCTCGCTCGTCCGCCGCGGGGAGCTCGACGAGGCGCTCCGCCTCGTCGGGTCCGCGCGGAGGCCCGACGCGGGCACCTGCGCCGCGCTCATCAAGAAGCTCAGCGCGTCGGGGCGCACCGCGGAGGCCCGCCGCGTGCTGGCCGCGTGCGGCCCCGACGTCATGGCGTACAACGCCATGGTGGCCGGGTACTGCGGCGCGGGGCAGCTCGACGCCGCGCGGCGGCTCGTCGCGGAGATGCCCGTGGAGCCCGACGCCTACACCTACAACACGCTCATCCGAGGCCTCTGCGGACGCGGCCGGACCGCGAACGCGCTGGCGGTGCTCGACGAAATGCTCCGCCGGCGATGTGTGCCGGACGTGGTCACCTACACCATCCTCCTCGAGGCCACGTGCAAGAGGAGCGGGTACAAGCAGGCCATGAAGCTTCTCGACGAGATGCGAGATAAGGGGTGCACCCCGGACATTGTCACCTACAACGTCGTTGTCAATGGAATCTGCCAAGAAGGACGGGTTGACGATGCCATTGAGTTCTTGAAGAACCTCCCGTCATATGGCTGTGAACCAAACACAGTTAGCTATAACATTGTGTTGAAGGGCCTGTGTACCGCGGAGCGATGGGAGGATGCCGAGGAGCTCATGGGCGAGATGGGCCAGAAGGGTTGCCCTCCAAATGTGGTAACTTTTAACATGCTCATCAGTTTCTTATGCCGGAAAGGATTGGTTGAGCCAGCACTGGAAGTCCTTGAGCAGATCCCCAAGTACGGTTGCACACCTAATTCGTTGAGTTACAACCCGCTTCTCCACGCATTCTGCAAGCAAAAAAAGATGGATAAAGCGATGGCGTTTTTGGATTTGATGGTGTCCAGAGGCTGTTATCCAGACATCGTTTCATACAACACTCTACTTACTGCACTCTGCCGCAGTGGTGAGGTTGACGTCGCTGTTGAATTGCTTCATCAACTCAAGGACAAGGGCTGCGCTCCTGTCTTGATAAGTTATAACACGGTCATTGATGGGCTTACGAAGGCTGGGAAGACAAAGGAAGCACTAGAGCTGCTCAATGAGATGGTCAGCAAAGGGCTCCAACCAGATATTATCACATACTCGACAATAGCTGCTGGTCTTTGTAGAGAAGATAGAATTGAAGATGCAATTAGGGCATTTGGTAAAGTGCAAGATATGGGCATAAGGCCCAACACTGTGTTGTACAATGCGATAATTCTTGGGCTTTGCAAAAGGCGTGAAACACACAGTGCCATTGATCTTTTCGCTTACATGATAGGGAATGGCTGCATGCCGAATGAATCAACTTACACCATATTGATTGAAGGCTTGGCTTATGAGGGATTGATCAAGGAGGCACGGGATTTGCTGGATGAATTATGTTCGAGAGGTGTTGTAAGGAAGAGCTTGATAAATAAGGGAGCCATTAGACTGCTTGATTGAACTATGAATACATATAAGAGGATCAACTGAGTATCGAGGGTCTGAGAATGAGATTTTGTGCATCTTCGCTCTTCAGCAGGAGAGGAGATTTTACTGGATGTTCACCTAATTGATGTTGCTTTCTTGACAACATGTGAGTCCTTTCATCCACTTCCCACCTTACAGGCTTACAGCCCACTTCAGTCTTCGAGTTGCTTGGAATTTCTGCATAACTCTTGTCTTATTTAACATACTTTACCTTATTGTTGAACATGGTCTCATGTTTCACATTCTTGTCCTTACATGATATATCATACTAGTGTGAGATACATATTAGACCTGTTTTGATTGGGCATTTCTTGCTTCAATATGCTTTAGCACTTCATATGAACTAGCGGAATGAAGGGATATGCTAAGTGATGAGCATTAGGCTACCTGTTCTCTCTACTCCTGTACTGTAAGCCAGAGTTGACTTATCTTAGTCATTGACACGGTAATGACACCCTAATTGGTTTCAAACTAAACATGCCGCTTTCTCAGCTGCAGTTCTACAGAATTGACTTGGGATAAATCTAAGACTGTGAGCTACAGAATTTGCCAATTCAAGTAGAAAACATGAAAAATGACCAGTTGATTACTATCTGAAACTCCCTATTTACATCTAAATTGAATGACAACATAAAATTTGAACTAAATTTTAGAAAAGGCTGGAAGTCCAGATTTCCCTTTGGATTGTGGGTACCATCAGAAATTGGTCAGTGCCCAGTGATGTGATTCAAAACTTCTTTCTCAATGAGTTATTTTCCATGCTTGTGATGGGAAAATGATGAAATTATTGGATTCAGTCCTTCACCACTAAGACATTGATGGCACCTGGCCACTTTATGTCAAATGTCAGACCAGAAACATGATTTTCACTTATGCAGTTACCATCCTTAGGCGTAACCTTTCCAATGTGTCATATTATACTAAAGTCGCTGATTTAGTTTATATTTTAATTAATTTGCTCTGTTTTTATTGCAGTCTTGCCGTGCTCAAATGCTAATGGAGGTCCTTTTCTCAGATTGCCACCAGAAGGTACTTGAACAAACAGTGAATCTGAGCCTCACTGTCCATCAAAACTGATCTGTTTATATATATGCAAGGCACTGATAACCTTGTAAGTTGTGAACCTTTGCATATAAATTTGTAATGATTCAGGCTCACCAGTATATGATGCCCTCCTGTAGCTAATAGTTTTTCCCGTGTCAAATCAAATGAATTTTGGTTTAGGCATAACCATTTAGCTTATTATTGTGTGTCTTCCCAATTATGCAATGTACCAAAAAAAATGCATCTTAGGTGTACATCTATGCAATGTGCACCATTTAATCTCCATCCTGGCCAAAACCTGAATTCAGGAACAGGATTTTAGCCCCAGCTTTGTAGTTCCAACAGAAAAAAAGAAGAAGAAAAACTACTATTAATTCCAAAGTTCTATACAAATATAAGAAAAAGAGGCAGCCATGGAAGTTCTTGGGAATGCATCATGCAATCCTTGGTTCTATGCAAGCTTTTGAAGGACCTTAAAATTACACCATGACACGACAAAGAATAACTTAATTCATTACACCAGTTAGCAAAATACCCCCTCTATATGTAATATACCCTGTGGTACCAATGGATCAGTGTTTTACAAAAAATCATGCCGAATTGGTGCTCCTCCAAGTTGCATGGCTTCTTAAAACATACACTGCCTGATGTGAAAACACAGGAAACCATGCAAAGTTTGTGTGGTTTTTTTTCCCCTGTCTGCCTAGAGCAGAACTCCCATACAATCTGATCAGGCAGGTGGTGGCTCTGCAGGCCCAGCTGGTTTTGTATTCAGAAGAGGCTGGATTGCCTTCACGACGATCGTCATGTTCGGTCGGAAGTCGGCTTCGTACTGAACGCACAATGCTGCAACTGCTGCTAGCTGAAAAAAAATCATGAAAGAAAAAACAATGGCACTCACTGCTGCTTTCTGAATTTTGTCAGATTTGCTACAGTATAGCTACCTTTGCGACAGCCTTCGGAGGGTAATCATTGTTGAGCTTTGGATCGACGCACTGCTTAACTTTATCTTCGCTCAATCTTGGAGTAGCCTGCCTCACAAAGATCATGGTATATGTAAGATCATTGGAAATGGAAAGATTGAAATAGGATATATTGTAATAAGTTATCTTTTGTTGAAGGATAAAACTTCTCCTTACCC More
CDS seq		ATGGCCGCGCCCGCGCCCACAGCTTCGCCGCCGCCGCCGCCCGCCATGTCCGGCCTCCTCTCCTTCGCCTCGTCCCGCCCCTACCCTCCCCTCCCCGCGCCCAGACCCGCCGCCGCCGCCCCCAGGCCGCGCCTCCGCATAGCGGGTTCCGCCGCCGCGGCCCCCAACGCCGTGTCCCACCGGGCATCCTCCTCCTTCTCCTCCGGAGACCGCCTCCGCTCGCTCGTCCGCCGCGGGGAGCTCGACGAGGCGCTCCGCCTCGTCGGGTCCGCGCGGAGGCCCGACGCGGGCACCTGCGCCGCGCTCATCAAGAAGCTCAGCGCGTCGGGGCGCACCGCGGAGGCCCGCCGCGTGCTGGCCGCGTGCGGCCCCGACGTCATGGCGTACAACGCCATGGTGGCCGGGTACTGCGGCGCGGGGCAGCTCGACGCCGCGCGGCGGCTCGTCGCGGAGATGCCCGTGGAGCCCGACGCCTACACCTACAACACGCTCATCCGAGGCCTCTGCGGACGCGGCCGGACCGCGAACGCGCTGGCGGTGCTCGACGAAATGCTCCGCCGGCGATGTGTGCCGGACGTGGTCACCTACACCATCCTCCTCGAGGCCACGTGCAAGAGGAGCGGGTACAAGCAGGCCATGAAGCTTCTCGACGAGATGCGAGATAAGGGGTGCACCCCGGACATTGTCACCTACAACGTCGTTGTCAATGGAATCTGCCAAGAAGGACGGGTTGACGATGCCATTGAGTTCTTGAAGAACCTCCCGTCATATGGCTGTGAACCAAACACAGTTAGCTATAACATTGTGTTGAAGGGCCTGTGTACCGCGGAGCGATGGGAGGATGCCGAGGAGCTCATGGGCGAGATGGGCCAGAAGGGTTGCCCTCCAAATGTGGTAACTTTTAACATGCTCATCAGTTTCTTATGCCGGAAAGGATTGGTTGAGCCAGCACTGGAAGTCCTTGAGCAGATCCCCAAGTACGGTTGCACACCTAATTCGTTGAGTTACAACCCGCTTCTCCACGCATTCTGCAAGCAAAAAAAGATGGATAAAGCGATGGCGTTTTTGGATTTGATGGTGTCCAGAGGCTGTTATCCAGACATCGTTTCATACAACACTCTACTTACTGCACTCTGCCGCAGTGGTGAGGTTGACGTCGCTGTTGAATTGCTTCATCAACTCAAGGACAAGGGCTGCGCTCCTGTCTTGATAAGTTATAACACGGTCATTGATGGGCTTACGAAGGCTGGGAAGACAAAGGAAGCACTAGAGCTGCTCAATGAGATGGTCAGCAAAGGGCTCCAACCAGATATTATCACATACTCGACAATAGCTGCTGGTCTTTGTAGAGAAGATAGAATTGAAGATGCAATTAGGGCATTTGGTAAAGTGCAAGATATGGGCATAAGGCCCAACACTGTGTTGTACAATGCGATAATTCTTGGGCTTTGCAAAAGGCGTGAAACACACAGTGCCATTGATCTTTTCGCTTACATGATAGGGAATGGCTGCATGCCGAATGAATCAACTTACACCATATTGATTGAAGGCTTGGCTTATGAGGGATTGATCAAGGAGGCACGGGATTTGCTGGATGAATTATGTTCGAGAGGTGTTGTAAGGAAGAGCTTGATAAATAAGGGAGCCATTAGACTGCTTGATTGA More
Protein seq		MAAPAPTASPPPPPAMSGLLSFASSRPYPPLPAPRPAAAAPRPRLRIAGSAAAAPNAVSHRASSSFSSGDRLRSLVRRGELDEALRLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMVAGYCGAGQLDAARRLVAEMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVVRKSLINKGAIRLLD
Function		Pentatricopeptide repeat-containing protein At1g09900 [UniProtKB/Swiss-Prot:Q3EDF8]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
LOC_Os02g35750	LOC_Os02g35750.1	Chr02	21471731	21473822	+	MSU_osa1r7
CDS seq	ATGGCCGCGCCCGCGCCCACAGCTTCGCCGCCGCCGCCGCCCGCCATGTCCGGCCTCCTCTCCTTCGCCTCGTCCCGCCCCTACCCTCCCCTCCCCGCGCCCAGACCCGCCGCCGCCGCCCCCAGGCCGCGCCTCCGCATAGCGGGTTCCGCCGCCGCGGCCCCCAACGCCGTGTCCCACCGGGCATCCTCCTCCTTCTCCTCCGGAGACCGCCTCCGCTCGCTCGTCCGCCGCGGGGAGCTCGACGAGGCGCTCCGCCTCGTCGGGTCCGCGCGGAGGCCCGACGCGGGCACCTGCGCCGCGCTCATCAAGAAGCTCAGCGCGTCGGGGCGCACCGCGGAGGCCCGCCGCGTGCTGGCCGCGTGCGGCCCCGACGTCATGGCGTACAACGCCATGGTGGCCGGGTACTGCGGCGCGGGGCAGCTCGACGCCGCGCGGCGGCTCGTCGCGGAGATGCCCGTGGAGCCCGACGCCTACACCTACAACACGCTCATCCGAGGCCTCTGCGGACGCGGCCGGACCGCGAACGCGCTGGCGGTGCTCGACGAAATGCTCCGCCGGCGATGTGTGCCGGACGTGGTCACCTACACCATCCTCCTCGAGGCCACGTGCAAGAGGAGCGGGTACAAGCAGGCCATGAAGCTTCTCGACGAGATGCGAGATAAGGGGTGCACCCCGGACATTGTCACCTACAACGTCGTTGTCAATGGAATCTGCCAAGAAGGACGGGTTGACGATGCCATTGAGTTCTTGAAGAACCTCCCGTCATATGGCTGTGAACCAAACACAGTTAGCTATAACATTGTGTTGAAGGGCCTGTGTACCGCGGAGCGATGGGAGGATGCCGAGGAGCTCATGGGCGAGATGGGCCAGAAGGGTTGCCCTCCAAATGTGGTAACTTTTAACATGCTCATCAGTTTCTTATGCCGGAAAGGATTGGTTGAGCCAGCACTGGAAGTCCTTGAGCAGATCCCCAAGTACGGTTGCACACCTAATTCGTTGAGTTACAACCCGCTTCTCCACGCATTCTGCAAGCAAAAAAAGATGGATAAAGCGATGGCGTTTTTGGATTTGATGGTGTCCAGAGGCTGTTATCCAGACATCGTTTCATACAACACTCTACTTACTGCACTCTGCCGCAGTGGTGAGGTTGACGTCGCTGTTGAATTGCTTCATCAACTCAAGGACAAGGGCTGCGCTCCTGTCTTGATAAGTTATAACACGGTCATTGATGGGCTTACGAAGGCTGGGAAGACAAAGGAAGCACTAGAGCTGCTCAATGAGATGGTCAGCAAAGGGCTCCAACCAGATATTATCACATACTCGACAATAGCTGCTGGTCTTTGTAGAGAAGATAGAATTGAAGATGCAATTAGGGCATTTGGTAAAGTGCAAGATATGGGCATAAGGCCCAACACTGTGTTGTACAATGCGATAATTCTTGGGCTTTGCAAAAGGCGTGAAACACACAGTGCCATTGATCTTTTCGCTTACATGATAGGGAATGGCTGCATGCCGAATGAATCAACTTACACCATATTGATTGAAGGCTTGGCTTATGAGGGATTGATCAAGGAGGCACGGGATTTGCTGGATGAATTATGTTCGAGAGGTGTTGTAAGGAAGAGCTTGATAAATAAGGGAGCCATTAGACTGCTTGATTGA More
Protein seq	MAAPAPTASPPPPPAMSGLLSFASSRPYPPLPAPRPAAAAPRPRLRIAGSAAAAPNAVSHRASSSFSSGDRLRSLVRRGELDEALRLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMVAGYCGAGQLDAARRLVAEMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVVRKSLINKGAIRLLD More

Gene	Transcript	Chromosome	Start	End	Strand	Source
LOC_Os02g35750	LOC_Os02g35750.2	Chr02	21471731	21475468	+	MSU_osa1r7
CDS seq	ATGGCCGCGCCCGCGCCCACAGCTTCGCCGCCGCCGCCGCCCGCCATGTCCGGCCTCCTCTCCTTCGCCTCGTCCCGCCCCTACCCTCCCCTCCCCGCGCCCAGACCCGCCGCCGCCGCCCCCAGGCCGCGCCTCCGCATAGCGGGTTCCGCCGCCGCGGCCCCCAACGCCGTGTCCCACCGGGCATCCTCCTCCTTCTCCTCCGGAGACCGCCTCCGCTCGCTCGTCCGCCGCGGGGAGCTCGACGAGGCGCTCCGCCTCGTCGGGTCCGCGCGGAGGCCCGACGCGGGCACCTGCGCCGCGCTCATCAAGAAGCTCAGCGCGTCGGGGCGCACCGCGGAGGCCCGCCGCGTGCTGGCCGCGTGCGGCCCCGACGTCATGGCGTACAACGCCATGGTGGCCGGGTACTGCGGCGCGGGGCAGCTCGACGCCGCGCGGCGGCTCGTCGCGGAGATGCCCGTGGAGCCCGACGCCTACACCTACAACACGCTCATCCGAGGCCTCTGCGGACGCGGCCGGACCGCGAACGCGCTGGCGGTGCTCGACGAAATGCTCCGCCGGCGATGTGTGCCGGACGTGGTCACCTACACCATCCTCCTCGAGGCCACGTGCAAGAGGAGCGGGTACAAGCAGGCCATGAAGCTTCTCGACGAGATGCGAGATAAGGGGTGCACCCCGGACATTGTCACCTACAACGTCGTTGTCAATGGAATCTGCCAAGAAGGACGGGTTGACGATGCCATTGAGTTCTTGAAGAACCTCCCGTCATATGGCTGTGAACCAAACACAGTTAGCTATAACATTGTGTTGAAGGGCCTGTGTACCGCGGAGCGATGGGAGGATGCCGAGGAGCTCATGGGCGAGATGGGCCAGAAGGGTTGCCCTCCAAATGTGGTAACTTTTAACATGCTCATCAGTTTCTTATGCCGGAAAGGATTGGTTGAGCCAGCACTGGAAGTCCTTGAGCAGATCCCCAAGTACGGTTGCACACCTAATTCGTTGAGTTACAACCCGCTTCTCCACGCATTCTGCAAGCAAAAAAAGATGGATAAAGCGATGGCGTTTTTGGATTTGATGGTGTCCAGAGGCTGTTATCCAGACATCGTTTCATACAACACTCTACTTACTGCACTCTGCCGCAGTGGTGAGGTTGACGTCGCTGTTGAATTGCTTCATCAACTCAAGGACAAGGGCTGCGCTCCTGTCTTGATAAGTTATAACACGGTCATTGATGGGCTTACGAAGGCTGGGAAGACAAAGGAAGCACTAGAGCTGCTCAATGAGATGGTCAGCAAAGGGCTCCAACCAGATATTATCACATACTCGACAATAGCTGCTGGTCTTTGTAGAGAAGATAGAATTGAAGATGCAATTAGGGCATTTGGTAAAGTGCAAGATATGGGCATAAGGCCCAACACTGTGTTGTACAATGCGATAATTCTTGGGCTTTGCAAAAGGCGTGAAACACACAGTGCCATTGATCTTTTCGCTTACATGATAGGGAATGGCTGCATGCCGAATGAATCAACTTACACCATATTGATTGAAGGCTTGGCTTATGAGGGATTGATCAAGGAGGCACGGGATTTGCTGGATGAATTATGTTCGAGAGGTGTTGTAAGGAAGAGCTTGATAAATAAGGGAGCCATTAGACTGCTTGATTGA More
Protein seq	MAAPAPTASPPPPPAMSGLLSFASSRPYPPLPAPRPAAAAPRPRLRIAGSAAAAPNAVSHRASSSFSSGDRLRSLVRRGELDEALRLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMVAGYCGAGQLDAARRLVAEMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVVRKSLINKGAIRLLD More

Gene	Transcript	Chromosome	Start	End	Strand	Source
LOC_Os02g35750	LOC_Os02g35750.3	Chr02	21472360	21475633	+	MSU_osa1r7
CDS seq	ATGAAGCTTCTCGACGAGATGCGAGATAAGGGGTGCACCCCGGACATTGTCACCTACAACGTCGTTGTCAATGGAATCTGCCAAGAAGGACGGGTTGACGATGCCATTGAGTTCTTGAAGAACCTCCCGTCATATGGCTGTGAACCAAACACAGTTAGCTATAACATTGTGTTGAAGGGCCTGTGTACCGCGGAGCGATGGGAGGATGCCGAGGAGCTCATGGGCGAGATGGGCCAGAAGGGTTGCCCTCCAAATGTGGTAACTTTTAACATGCTCATCAGTTTCTTATGCCGGAAAGGATTGGTTGAGCCAGCACTGGAAGTCCTTGAGCAGATCCCCAAGTACGGTTGCACACCTAATTCGTTGAGTTACAACCCGCTTCTCCACGCATTCTGCAAGCAAAAAAAGATGGATAAAGCGATGGCGTTTTTGGATTTGATGGTGTCCAGAGGCTGTTATCCAGACATCGTTTCATACAACACTCTACTTACTGCACTCTGCCGCAGTGGTGAGGTTGACGTCGCTGTTGAATTGCTTCATCAACTCAAGGACAAGGGCTGCGCTCCTGTCTTGATAAGTTATAACACGGTCATTGATGGGCTTACGAAGGCTGGGAAGACAAAGGAAGCACTAGAGCTGCTCAATGAGATGGTCAGCAAAGGGCTCCAACCAGATATTATCACATACTCGACAATAGCTGCTGGTCTTTGTAGAGAAGATAGAATTGAAGATGCAATTAGGGCATTTGGTAAAGTGCAAGATATGGGCATAAGGCCCAACACTGTGTTGTACAATGCGATAATTCTTGGGCTTTGCAAAAGGCGTGAAACACACAGTGCCATTGATCTTTTCGCTTACATGATAGGGAATGGCTGCATGCCGAATGAATCAACTTACACCATATTGATTGAAGGCTTGGCTTATGAGGGATTGATCAAGGAGGCACGGGATTTGCTGGATGAATTATGTTCGAGAGGTGTTGTAAGGAAGAGCTTGATAAATAAGGGAGCCATTAGACTGCTTGATTGA More
Protein seq	MKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVVRKSLINKGAIRLLD More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	2.767038	2.313450	0.814130

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_02g0565400	RBH	5.134666	3.616355	3.867090
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os04g36840	RBH	0.341049	0.130744	0.178692
Nipponbare \| IRGSP 1.0 \| RAP-db	Os02g0565400	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_02g0021630	RBH	0.499579	0.000000	1.632169
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_02g0021720	RBH	0.437826	0.0	0.619641
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_02g0021730	RBH	1.321050	0.777898	2.886961
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_02g0021430	RBH	0.208621	0.000000	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_02g0021380	RBH	4.064860	0.000000	3.849854
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_02G0352500	RBH	5.2388625	2.854623	1.8374585
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_02g0021110	RBH	0.551320	0.0	0.760416
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_02G0379500	RBH	4.9101065	1.9530195	3.4676295
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_02g0021560	RBH	0.340523	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_02g0021300	RBH	0.880113	2.938750	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_02g0021760	RBH	4.530016	0.000000	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_02g0021460	RBH	0.904146	0.0	1.007726
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_02g0021290	RBH	0.410095	0.000000	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_02G021740	RBH	0.328298	0.0	1.037486
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_02g0021510	RBH	1.620471	3.816461	3.406270

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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