Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_02g0021720 | OGI:02061510 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr02:21582886-21585805 | ||||||||
| Gene Symbol | WSL4, OsSTA65, STA65, OsWSL4 | ||||||||||
| DNA seq | atggccgcgcccgcgcccacagcttcgccgccgccgccgcccgccatgtccggcctcctctccttcgcctcgtcccgcccctaccctcccctccccgcgcccagacccgccgccgccgcccccaggccgcgcctccgcatagcgggttccgccgccgcggcccccaacgccgtgtcccaccgggcatcctcctccttctcctccggagaccgcctccgctcgctcgtccgccgcggggagctcgacgaggcgctccgcctcgtcgggtccgcgcggaggcccgacgcgggcacctgcgccgcgctcatcaagaagctcagcgcgtcggggcgcaccgcggaggcccgccgcgtgctggccgcgtgcggccccgacgtcatggcgtacaacgccatggtggccgggtactgcggcgcggggcagctcgacgccgcgcggcggctcgtcgcggagatgcccgtggagcccgacgcctacacctacaacacgctcatccgaggcctctgcggacgcggccggaccgcgaacgcgctggcggtgctcgacgaaatgctccgccggcgatgtgtgccggacgtggtcacctacaccatcctcctcgaggccacgtgcaagaggagcgggtacaagcaggccatgaagcttctcgacgagatgcgagataaggggtgcaccccggacattgtcacctacaacgtcgttgtcaatggaatctgccaagaaggacgggttgacgatgccattgagttcttgaagaacctcccgtcatatggctgtgaaccaaacacagttagctataacattgtgttgaagggcctgtgtaccgcggagcgatgggaggatgccgaggagctcatgggcgagatgggccagaagggttgccctccaaatgtggtaacttttaacatgctcatcagtttcttatgccggaaaggattggttgagccagcactggaagtccttgagcagatccccaagtacggttgcacacctaattcgttgagttacaacccgcttctccacgcattctgcaagcaaaaaaagatggataaagcgatggcgtttttggatttgatggtgtccagaggctgttatccagacatcgtttcatacaacactctacttactgcactctgccgcagtggtgaggttgacgtcgctgttgaattgcttcatcaactcaaggacaagggctgcgctcctgtcttgataagttataacacggtcattgatgggcttacgaaggctgggaagacaaaggaagcactagagctgctcaatgagatggtcagcaaagggctccaaccagatattatcacatactcgacaatagctgctggtctttgtagagaagatagaattgaagatgcaattagggcatttggtaaagtgcaagatatgggcataaggcccaacactgtgttgtacaatgcgataattcttgggctttgcaaaaggcgtgaaacacacagtgccattgatcttttcgcttacatgatagggaatggctgcatgccgaatgaatcaacttacaccatattgattgaaggcttggcttatgagggattgatcaaggaggcacgggatttgctggatgaattatgttcgagaggtgttgtaaggaagagcttgataaataagggagccattagactgcttgattgaactatgaatacatataagaggatcaactgagtatcgagggtctgagaatgagattttgtgcatcttcgctcttcagcaggagaggagattttactggatgttcacctaattgatgttgctttcttgacaacatgtgagtcctttcatccacttcccaccttacaggcttacagcccacttcagtcttcgagttgcttggaatttctgcataactcttgtcttatttaacatactttaccttattgttgaacatggtctcatgtttcacattcttgtccttacatgatatatcatactagtgtgagatacatattagacctgttttgattgggcatttcttgcttcaatatgctttagcacttcatatgaactagcggaatgaagggatatgctaagtgatgagcattaggctacctgttctctctactcctgtactgtaagccagagttgacttatcttagtcattgacacggtaatgacaccctaattggtttcaaactaaacatgccgctttctcagctgcagttctacagaattgacttgggataaatctaagactgtgagctacagaatttgccaattcaagtagaaaacatgaaaaatgaccagttgattactatctgaaactccctatttacatctaaattgaatgacaacataaaatttgaactaaattttagaaaaggctggaagtccagatttccctttggattgtgggtaccatcagaaattggtcagtgcccagtgatgtgattcaaaacttctttctcaatgagttattttccatgcttgtgatgggaaaatgatgaaattattggattcagtccttcaccactaagacattgatggcacctggccactttatgtcaaatgtcagaccagaaacatgattttcacttatgcagttaccatccttaggcgtaacctttccaatgtgtcatattatactaaagtcgctgatttagtttatattttaattaatttgctctgtttttattgcagtcttgccgtgctcaaatgctaatggaggtccttttctcagattgccaccagaaggtacttgaacaaacagtgaatctgagcctcactgtccatcaaaactgatctgtttatatatatgcaaggcactgataaccttgtaagttgtgaacctttgcatataaatttgtaatgattcaggctcaccagtatatgatgccctcctgtagctaatagtttttcccgtgtcaaatcaaatgaattttggtttaggcat
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| CDS seq | atggccgcgcccgcgcccacagcttcgccgccgccgccgcccgccatgtccggcctcctctccttcgcctcgtcccgcccctaccctcccctccccgcgcccagacccgccgccgccgcccccaggccgcgcctccgcatagcgggttccgccgccgcggcccccaacgccgtgtcccaccgggcatcctcctccttctcctccggagaccgcctccgctcgctcgtccgccgcggggagctcgacgaggcgctccgcctcgtcgggtccgcgcggaggcccgacgcgggcacctgcgccgcgctcatcaagaagctcagcgcgtcggggcgcaccgcggaggcccgccgcgtgctggccgcgtgcggccccgacgtcatggcgtacaacgccatggtggccgggtactgcggcgcggggcagctcgacgccgcgcggcggctcgtcgcggagatgcccgtggagcccgacgcctacacctacaacacgctcatccgaggcctctgcggacgcggccggaccgcgaacgcgctggcggtgctcgacgaaatgctccgccggcgatgtgtgccggacgtggtcacctacaccatcctcctcgaggccacgtgcaagaggagcgggtacaagcaggccatgaagcttctcgacgagatgcgagataaggggtgcaccccggacattgtcacctacaacgtcgttgtcaatggaatctgccaagaaggacgggttgacgatgccattgagttcttgaagaacctcccgtcatatggctgtgaaccaaacacagttagctataacattgtgttgaagggcctgtgtaccgcggagcgatgggaggatgccgaggagctcatgggcgagatgggccagaagggttgccctccaaatgtggtaacttttaacatgctcatcagtttcttatgccggaaaggattggttgagccagcactggaagtccttgagcagatccccaagtacggttgcacacctaattcgttgagttacaacccgcttctccacgcattctgcaagcaaaaaaagatggataaagcgatggcgtttttggatttgatggtgtccagaggctgttatccagacatcgtttcatacaacactctacttactgcactctgccgcagtggtgaggttgacgtcgctgttgaattgcttcatcaactcaaggacaagggctgcgctcctgtcttgataagttataacacggtcattgatgggcttacgaaggctgggaagacaaaggaagcactagagctgctcaatgagatggtcagcaaagggctccaaccagatattatcacatactcgacaatagctgctggtctttgtagagaagatagaattgaagatgcaattagggcatttggtaaagtgcaagatatgggcataaggcccaacactgtgttgtacaatgcgataattcttgggctttgcaaaaggcgtgaaacacacagtgccattgatcttttcgcttacatgatagggaatggctgcatgccgaatgaatcaacttacaccatattgattgaaggcttggcttatgagggattgatcaaggaggcacgggatttgctggatgaattatgttcgagaggtgttgtaaggaagagcttgataaataagggagccattagactgcttgattga
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| Protein seq | MAAPAPTASPPPPPAMSGLLSFASSRPYPPLPAPRPAAAAPRPRLRIAGSAAAAPNAVSHRASSSFSSGDRLRSLVRRGELDEALRLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMVAGYCGAGQLDAARRLVAEMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVVRKSLINKGAIRLLD |
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| Function | Pentatricopeptide repeat-containing protein At1g09900 [UniProtKB/Swiss-Prot:Q3EDF8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0021720 | OsKeNa_02g0021720.01 | Chr02 | 21582886 | 21585805 | + | NAM | ||
| CDS seq | atggccgcgcccgcgcccacagcttcgccgccgccgccgcccgccatgtccggcctcctctccttcgcctcgtcccgcccctaccctcccctccccgcgcccagacccgccgccgccgcccccaggccgcgcctccgcatagcgggttccgccgccgcggcccccaacgccgtgtcccaccgggcatcctcctccttctcctccggagaccgcctccgctcgctcgtccgccgcggggagctcgacgaggcgctccgcctcgtcgggtccgcgcggaggcccgacgcgggcacctgcgccgcgctcatcaagaagctcagcgcgtcggggcgcaccgcggaggcccgccgcgtgctggccgcgtgcggccccgacgtcatggcgtacaacgccatggtggccgggtactgcggcgcggggcagctcgacgccgcgcggcggctcgtcgcggagatgcccgtggagcccgacgcctacacctacaacacgctcatccgaggcctctgcggacgcggccggaccgcgaacgcgctggcggtgctcgacgaaatgctccgccggcgatgtgtgccggacgtggtcacctacaccatcctcctcgaggccacgtgcaagaggagcgggtacaagcaggccatgaagcttctcgacgagatgcgagataaggggtgcaccccggacattgtcacctacaacgtcgttgtcaatggaatctgccaagaaggacgggttgacgatgccattgagttcttgaagaacctcccgtcatatggctgtgaaccaaacacagttagctataacattgtgttgaagggcctgtgtaccgcggagcgatgggaggatgccgaggagctcatgggcgagatgggccagaagggttgccctccaaatgtggtaacttttaacatgctcatcagtttcttatgccggaaaggattggttgagccagcactggaagtccttgagcagatccccaagtacggttgcacacctaattcgttgagttacaacccgcttctccacgcattctgcaagcaaaaaaagatggataaagcgatggcgtttttggatttgatggtgtccagaggctgttatccagacatcgtttcatacaacactctacttactgcactctgccgcagtggtgaggttgacgtcgctgttgaattgcttcatcaactcaaggacaagggctgcgctcctgtcttgataagttataacacggtcattgatgggcttacgaaggctgggaagacaaaggaagcactagagctgctcaatgagatggtcagcaaagggctccaaccagatattatcacatactcgacaatagctgctggtctttgtagagaagatagaattgaagatgcaattagggcatttggtaaagtgcaagatatgggcataaggcccaacactgtgttgtacaatgcgataattcttgggctttgcaaaaggcgtgaaacacacagtgccattgatcttttcgcttacatgatagggaatggctgcatgccgaatgaatcaacttacaccatattgattgaaggcttggcttatgagggattgatcaaggaggcacgggatttgctggatgaattatgttcgagaggtgttgtaaggaagagcttgataaataagggagccattagactgcttgattga
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| Protein seq | MAAPAPTASPPPPPAMSGLLSFASSRPYPPLPAPRPAAAAPRPRLRIAGSAAAAPNAVSHRASSSFSSGDRLRSLVRRGELDEALRLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMVAGYCGAGQLDAARRLVAEMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVVRKSLINKGAIRLLD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.437826 | 0.0 | 0.619641 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0565400 | RBH | 5.134666 | 3.616355 | 3.867090 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g35750 | RBH | 2.767038 | 2.313450 | 0.814130 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0565400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0021630 | RBH | 0.499579 | 0.000000 | 1.632169 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0016930 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0021730 | RBH | 1.321050 | 0.777898 | 2.886961 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0021430 | RBH | 0.208621 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0021380 | RBH | 4.064860 | 0.000000 | 3.849854 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0352500 | RBH | 5.2388625 | 2.854623 | 1.8374585 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0021110 | RBH | 0.551320 | 0.0 | 0.760416 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0379500 | RBH | 4.9101065 | 1.9530195 | 3.4676295 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0021560 | RBH | 0.340523 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0021300 | RBH | 0.880113 | 2.938750 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0021760 | RBH | 4.530016 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0021460 | RBH | 0.904146 | 0.0 | 1.007726 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0021290 | RBH | 0.410095 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G021740 | RBH | 0.328298 | 0.0 | 1.037486 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0021510 | RBH | 1.620471 | 3.816461 | 3.406270 |
