Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g36840 | OGI:04067950 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:22239221-22242241 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAAGTTGATAAGTCACTCAGTAGGCCATAGATTATGTTGGGAAAACTAGAAGGTTGATAATAAATACTGAATGAGCTTGCCTATGAAAAAAACCCAAATAATCATTCCAATGGGAATTTTTTTTAAAAAAAATCGCACTACCAAAAATTGTGCTCAAACTTGTGTAAGCATTATTGGAAATATGGACAACCATGTGTATAGATGATCAAAATGATCAACTACCTCCTAAAAAAAATCTATACCACACTGAATAGCACAAGAAAAACTGGTAACAGGTGAAGTACCTCTGCTAGAGGGAAAATTACTTCATGCCATTCTTCAAGAATCAAGTCTTCAACTGCTACTCAATCTCATTTCAGTTAACAAGTCCAAAAAAGCATGTTGCTGACGCATATGGACCAAAGTGACTGGAAGTCCCAGGAAAGCGATCAGGCGAACCAGTTATACATGAGTTGTTTAGGGACATGCCAAGAATTGATAGAGCATCATTTTATCACATAAGCAACTCCAATGAAATTTGCAGCTCTGGCAACCATATATCTGTTGCTTCACTAAATACTAGGAGACCAAATGGCTTGCCTTTTACTTTATTGATCAGTGTGAAGTTGTTTTCGATTAGTTTCTTGGTAGTTCTGGTCCAGGTGCAATATGTTTACATTTGAGGTTCTCTTATCTGAATATCCTGCAAAACAAGTAATGAAAAAATATCAGGTGCCTTCAAATCTTCAACTATGTTAGTAGGCTAAAGTGGAGTTTATATTATGACAAATGTTAATAAGCATAGGAATCCTGCCAGTTAGGTCATCATTTGAAGGGGAACAAACTGGCATAATGCAATAAAAATCTTGTTCACAGTATGCAGACTTAAACAGACTATTAGAAACCCAGTTATTATCTCTGATGATCCATGCTACTACATCTGTAATGAACTAAATGTCAAGACGGTATTAAGATGGGCACAGGGCACTAAAGCTATTAGACCAAACATGTGCTTCGAATTCTATAGTGATAATTTAAAAACTAATACAAGGTCGTATGGGGATGAAAATAGTTCAAACTTTGAGGAAACAAACATATATCTATTAAAGATGTGTAAGAGGTCTCTAACTCAAACAAGAACAACTCACCAGTCACCACAGCCTCTTATAAGCTTTGCAAGTTCCAGATGTTCTGCAGTGCATACCAGAAACAGTCAGTGTGCTTTTCCTTCCATTCTCTGCTGTACCATTCAACTACAAAGCTACTGAAATATCTAGTCTTTGCCTCACAGGAGAAGGGACTTCCTGAATAGATGAAGCACCCCCTGATGCAAGACGCATTACATGATCCACCTCATTTGGCATCCCAGCCTTTAATAGGCAACTAATAAAACAATTAACTGTAATACTGTCAGGGGAACAACCAGCCTCCACCATTTCATGGAAAAACATGATAGCCTCTGAAATCCTACTCTTCATGCAGTAACCAATTATTAGAATAGTATATGTATACTTGTCAGGGCGACATCCTTTTTCTTCCATGCCCTTTCGAATCAAGTTTGCTTCATCCACCTTGCCACACTTGCACAGTACATCTATCACTGGGTTATATATGAATGCTTGTGGTGCAATGTCAGGTCTCAAGTTTAGTTCATTCAAAAGACCAATTGCTTCATCTGATCTGTTCTGCTTACAAAGTGAGTGTATTATGATAGAAAAGGTGTACACATTTGGTTGAATCCGATGCTGGGCCATATCACTCCAAATCCTCAATGCATCATCAAGTTGCCCACACCGACAATAACCATCAATCAAAGAACTAAATGTCACAACATCAGGAGGGCACCGAAGTCGCGTCATTTGCTGATACACTTCCACCGCAGAACCCAAGTCGCCAACTTTGCCATATCCATTTATAAGCACATTGTATGTAACCGTGTTGGGCATTATCCCAGATGCAACCATGTCATTGTATACAGCCATTGCATCCTCCAACTTCCCAGCCTTACAGTAACCTGAGATCACCGAGGTGAATGTCACAACATTGGGCATGCAAACACCGTCCCTCTGGAGCCTCCTCAACACCTCATGACCTCTACTCACCTCATTAGTCCTGCATAGACCATCCACAAGGATGTTATGTGTGACAGTATCTGGTGAACACCCAAATTCATTCATCCTTTCGACCAGCTCGAGCGCCTTTTGGACTTGCCCCACCCGACAAACCCCCTTGATGACAACATTAAAGCTCCAAACATCTGGAGAATATACCCTGTCCTGAATCCACCGTTCAAACAACGCCACAACATCATGCACCCGTCCACGGCCAATCAACGAGCTCATGAGCTTGTTATACGCATATGCTTCTACGCGGCAACCAAACTCCGATGCCTTCGATAGCAATGTCGCGGACGCATCCAGAAGGTTTGCACATGTGCAGGAACTGACCAGGAACGAGAGAAAACGGGCGTCGGGAGAGTACCCGTAGTGGGTCGTCATTTGGTCAAACAGCTGGAGGGCGTCGGCCTGGCGGCCGGACCTGCACAGCACCACGATGATCTGCTGGCAGGAGTGCGCGGACGGCGTGATGGAGAGCGGCGAGCAATGCAGCGCGGTGAAGACGGCGAGGGCCGAGGAGGCGCACGGCGCGAGACGGAGCGCGGCGGCGGCGGCGAGCGGGGAAGGGTCGATGCGGCGGAACCCCGGGAGGTGCCGCGGGCGGAGCAATGCCGCGGACGCGAGCGCCTTGGCGATCCAGAGCTCGGCCGACGCGTGCGACGGCGACGGCGGCGACGAAGAAGGCGGGAGCTGCTGCTGCTGCGACGGCGGGCCGGCGGCGGAGTAGTGGAGGAGGCGGGCGAGGGGGCGGGGATGGGGCAGGTAGATGCAGAGGAGGGCGTGGAGGCGGGAAGGCATCAGAGAGAGCGACGGCGGTGGAGGGTTCGGGGGCGAGGAGGCGGAGGAGGAGGAGGCGGCGGCGGCGGCGGCGGCGGCGGGGGTCGTCATTAACTCACCGCGATGTGACAAAGAGAGAGGAGGCCAT
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| CDS seq | ATGACGACCCCCGCCGCCGCCGCCGCCGCCGCCGCCTCCTCCTCCTCCGCCTCCTCGCCCCCGAACCCTCCACCGCCGTCGCTCTCTCTGATGCCTTCCCGCCTCCACGCCCTCCTCTGCATCTACCTGCCCCATCCCCGCCCCCTCGCCCGCCTCCTCCACTACTCCGCCGCCGGCCCGCCGTCGCAGCAGCAGCAGCTCCCGCCTTCTTCGTCGCCGCCGTCGCCGTCGCACGCGTCGGCCGAGCTCTGGATCGCCAAGGCGCTCGCGTCCGCGGCATTGCTCCGCCCGCGGCACCTCCCGGGGTTCCGCCGCATCGACCCTTCCCCGCTCGCCGCCGCCGCCGCGCTCCGTCTCGCGCCGTGCGCCTCCTCGGCCCTCGCCGTCTTCACCGCGCTGCATTGCTCGCCGCTCTCCATCACGCCGTCCGCGCACTCCTGCCAGCAGATCATCGTGGTGCTGTGCAGGTCCGGCCGCCAGGCCGACGCCCTCCAGCTGTTTGACCAAATGACGACCCACTACGGGTACTCTCCCGACGCCCGTTTTCTCTCGTTCCTGGTCAGTTCCTGCACATGTGCAAACCTTCTGGATGCGTCCGCGACATTGCTATCGAAGGCATCGGAGTTTGGTTGCCGCGTAGAAGCATATGCGTATAACAAGCTCATGAGCTCGTTGATTGGCCGTGGACGGGTGCATGATGTTGTGGCGTTGTTTGAACGGTGGATTCAGGACAGGGTATATTCTCCAGATGTTTGGAGCTTTAATGTTGTCATCAAGGGGGTTTGTCGGGTGGGGCAAGTCCAAAAGGCGCTCGAGCTGGTCGAAAGGATGAATGAATTTGGGTGTTCACCAGATACTGTCACACATAACATCCTTGTGGATGGTCTATGCAGGACTAATGAGGTGAGTAGAGGTCATGAGGTGTTGAGGAGGCTCCAGAGGGACGGTGTTTGCATGCCCAATGTTGTGACATTCACCTCGGTGATCTCAGGTTACTGTAAGGCTGGGAAGTTGGAGGATGCAATGGCTGTATACAATGACATGGTTGCATCTGGGATAATGCCCAACACGGTTACATACAATGTGCTTATAAATGGATATGGCAAAGTTGGCGACTTGGGTTCTGCGGTGGAAGTGTATCAGCAAATGACGCGACTTCGGTGCCCTCCTGATGTTGTGACATTTAGTTCTTTGATTGATGGTTATTGTCGGTGTGGGCAACTTGATGATGCATTGAGGATTTGGAGTGATATGGCCCAGCATCGGATTCAACCAAATGTGTACACCTTTTCTATCATAATACACTCACTTTGTAAGCAGAACAGATCAGATGAAGCAATTGGTCTTTTGAATGAACTAAACTTGAGACCTGACATTGCACCACAAGCATTCATATATAACCCAGTGATAGATGTACTGTGCAAGTGTGGCAAGGTGGATGAAGCAAACTTGATTCGAAAGGGCATGGAAGAAAAAGGATGTCGCCCTGACAAGTATACATATACTATTCTAATAATTGGTTACTGCATGAAGAGTAGGATTTCAGAGGCTATCATGTTTTTCCATGAAATGGTGGAGGCTGGTTGTTCCCCTGACAGTATTACAGTTAATTGTTTTATTAGTTGCCTATTAAAGGCTGGGATGCCAAATGAGGTGGATCATGTAATGCGTCTTGCATCAGGGGGTGCTTCATCTATTCAGGAAGTCCCTTCTCCTGTGAGGCAAAGACTAGATATTTCAGTAGCTTTGTAG
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| Protein seq | MTTPAAAAAAAASSSSASSPPNPPPPSLSLMPSRLHALLCIYLPHPRPLARLLHYSAAGPPSQQQQLPPSSSPPSPSHASAELWIAKALASAALLRPRHLPGFRRIDPSPLAAAAALRLAPCASSALAVFTALHCSPLSITPSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGMPNEVDHVMRLASGGASSIQEVPSPVRQRLDISVAL |
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| Function | Pentatricopeptide repeat-containing protein At2g06000 [UniProtKB/Swiss-Prot:Q9ZUE9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g36840 | LOC_Os04g36840.1 | Chr04 | 22239221 | 22242241 | - | MSU_osa1r7 | ||
| CDS seq | ATGACGACCCCCGCCGCCGCCGCCGCCGCCGCCGCCTCCTCCTCCTCCGCCTCCTCGCCCCCGAACCCTCCACCGCCGTCGCTCTCTCTGATGCCTTCCCGCCTCCACGCCCTCCTCTGCATCTACCTGCCCCATCCCCGCCCCCTCGCCCGCCTCCTCCACTACTCCGCCGCCGGCCCGCCGTCGCAGCAGCAGCAGCTCCCGCCTTCTTCGTCGCCGCCGTCGCCGTCGCACGCGTCGGCCGAGCTCTGGATCGCCAAGGCGCTCGCGTCCGCGGCATTGCTCCGCCCGCGGCACCTCCCGGGGTTCCGCCGCATCGACCCTTCCCCGCTCGCCGCCGCCGCCGCGCTCCGTCTCGCGCCGTGCGCCTCCTCGGCCCTCGCCGTCTTCACCGCGCTGCATTGCTCGCCGCTCTCCATCACGCCGTCCGCGCACTCCTGCCAGCAGATCATCGTGGTGCTGTGCAGGTCCGGCCGCCAGGCCGACGCCCTCCAGCTGTTTGACCAAATGACGACCCACTACGGGTACTCTCCCGACGCCCGTTTTCTCTCGTTCCTGGTCAGTTCCTGCACATGTGCAAACCTTCTGGATGCGTCCGCGACATTGCTATCGAAGGCATCGGAGTTTGGTTGCCGCGTAGAAGCATATGCGTATAACAAGCTCATGAGCTCGTTGATTGGCCGTGGACGGGTGCATGATGTTGTGGCGTTGTTTGAACGGTGGATTCAGGACAGGGTATATTCTCCAGATGTTTGGAGCTTTAATGTTGTCATCAAGGGGGTTTGTCGGGTGGGGCAAGTCCAAAAGGCGCTCGAGCTGGTCGAAAGGATGAATGAATTTGGGTGTTCACCAGATACTGTCACACATAACATCCTTGTGGATGGTCTATGCAGGACTAATGAGGTGAGTAGAGGTCATGAGGTGTTGAGGAGGCTCCAGAGGGACGGTGTTTGCATGCCCAATGTTGTGACATTCACCTCGGTGATCTCAGGTTACTGTAAGGCTGGGAAGTTGGAGGATGCAATGGCTGTATACAATGACATGGTTGCATCTGGGATAATGCCCAACACGGTTACATACAATGTGCTTATAAATGGATATGGCAAAGTTGGCGACTTGGGTTCTGCGGTGGAAGTGTATCAGCAAATGACGCGACTTCGGTGCCCTCCTGATGTTGTGACATTTAGTTCTTTGATTGATGGTTATTGTCGGTGTGGGCAACTTGATGATGCATTGAGGATTTGGAGTGATATGGCCCAGCATCGGATTCAACCAAATGTGTACACCTTTTCTATCATAATACACTCACTTTGTAAGCAGAACAGATCAGATGAAGCAATTGGTCTTTTGAATGAACTAAACTTGAGACCTGACATTGCACCACAAGCATTCATATATAACCCAGTGATAGATGTACTGTGCAAGTGTGGCAAGGTGGATGAAGCAAACTTGATTCGAAAGGGCATGGAAGAAAAAGGATGTCGCCCTGACAAGTATACATATACTATTCTAATAATTGGTTACTGCATGAAGAGTAGGATTTCAGAGGCTATCATGTTTTTCCATGAAATGGTGGAGGCTGGTTGTTCCCCTGACAGTATTACAGTTAATTGTTTTATTAGTTGCCTATTAAAGGCTGGGATGCCAAATGAGGTGGATCATGTAATGCGTCTTGCATCAGGGGGTGCTTCATCTATTCAGGAAGTCCCTTCTCCTGTGAGGCAAAGACTAGATATTTCAGTAGCTTTGTAG
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| Protein seq | MTTPAAAAAAAASSSSASSPPNPPPPSLSLMPSRLHALLCIYLPHPRPLARLLHYSAAGPPSQQQQLPPSSSPPSPSHASAELWIAKALASAALLRPRHLPGFRRIDPSPLAAAAALRLAPCASSALAVFTALHCSPLSITPSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGMPNEVDHVMRLASGGASSIQEVPSPVRQRLDISVAL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.341049 | 0.130744 | 0.178692 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0446100 | RBH | 0.158696 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g35750 | RBH | 2.767038 | 2.313450 | 0.814130 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0446100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0014800 | RBH | 0.145187 | 2.063638 | 1.248931 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0015660 | RBH | 0.091644 | 0.000000 | 0.376968 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0015390 | RBH | 0.000000 | 1.756174 | 1.196783 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0014960 | RBH | 0.056082 | 0.118289 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0015290 | RBH | 1.651747 | 1.358725 | 2.226139 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0346700 | RBH | 1.007629 | 2.583615 | 1.290054 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0014120 | RBH | 0.0 | 0.189760 | 0.316575 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0343400 | RBH | 1.03935 | 3.4194605 | 5.9799965 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0014760 | RBH | 0.065195 | 0.023985 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0014480 | RBH | 0.143679 | 1.933444 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0014470 | RBH | 0.000000 | 4.985579 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0015110 | RBH | 0.178837 | 0.094247 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0015300 | RBH | 0.081146 | 0.546145 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G014370 | RBH | 0.172778 | 0.283227 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0014430 | RBH | 0.916963 | 6.240022 | 1.196961 |
