Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g27440 | OGI:02047370 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:16172700-16180337 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AACATTTTTTCTAAATATTGCTTTTGACCATCTTTGCATCATTTTAGGAGAAATGGTTTGCCATTTGCTGTGAATATATTTTCACCTGAGGTCGGCATCTGCTTTAGGATTAAAGTACCTGAAGGATGAATTTTGTTAAAATTTTGAAGTTTGGGTTGCTAAATAATAAACTTTGGTTTTGCTTAATTTCTGCAGCCTATTTAGGTCTTGGTATAAGTTTCTGTCTTTTGATATATAGTTCTGTCGTAATATACCTTGCAGCATCTTTGGTCAGTACACTTGATGATGATTCTTTGAAACTATATGCCCTAATATGGAAAAGAACTATGGCTTGCCAAATGGAAGCTTCTAGAGCTGAGATGGTTAGCTATTCTTTTGCCTCTTTTTTTGTACTGTTATTTTTCACAGCTGTTCCTATACACTTGTCACTTTTCTTATTGTGGAGTGTTTCTTAATATGAAAACCATGGTTTAGATTAATTGGACTAAATATGTTCTAGCCTCTAATGACACCCCAACAACAAGAACACACTGAAGTAAACTGGATGGTACTGTCTATAGTTAGTAGGACTGCTCTATGAAATTCCACCTAAGAAACAGCTTTTTTTAGATAACGGGCAGCGCCCGGCCTCTGCATTATCAGGTGCACACGGCCATAGAGTTGTCAAAAAACAGCTGAACAGAGAAGAAACAAGCTTCTATGACTACATAGAGTTGTCAAAAAAGTGTAAGTATTTGTGAGTGTAAGGATTATTCGTTTGGATGTCTGTTCAAAATGTTCCACAAAGACATGTTAGTTAATAAAAAAAAGGTTGGTAGTGAATATGGATTTGTAAGAAGGTGCTTCTAAGTTGTAACCAAGCAAAATAATTCGTTCTGTAGACAAACGTTTCATTTCTGGATTATGACAGCTTTGAATAATTGTATCTGAACGTACCCATATTTCTTCTGGATAATAATCCTTCTATTTAACAGTTGCTAATTTGGTTTTATGAATTGCTGACACAAATAACACCGAAGAGGCCACATGGCAATGCTTGTTATTGCTCTTGGGCTAAGGCTTAGTTCGAATAGGCATACATAGTGGTCCCTTGGTATTCAAAATGAAGCGAGTCATTAGCGCATGATTAATTGAGAATTAACTATTATAAACTTGAAAAATGGATTTATTTGATTTTTTTAATAAAAAACCACACCGTTTAGCAGTTTGGGAAGTAGCTCATCCAAAATGTACTTGAGAATGCAGCCTAAATATATTTAATAGTAGCATGCTGGTGTTGTAACAGACAATATGTTGGCCTCCATTTTCTCTAATATGTATTATGCCAAAATCTCTGAATTTCCATGGTAAAAAAAAATCTCTTCTTTTTTTTGTGCACTATTTTTTTTTAATAGCTAAAAAAATCAATCAAATTTCATGCTTAGAGTTTATCTTTTCGTAATTGCACTGTAGATTCAAGTTGATATTGGTAATTCTAAAGGAGACATGATTTTTCATTCGTCTGCATCAAATCTTGACTTCAAGGGATACCAAGCTGTATATGATGTAAGTTGTACATTTTATGTATCTATGCTTCTTGCATCCTCTATACATTCAGAACATCCTGTATAGTTCACTTTTCTTTGCCTAAGTTTTTCTATATCCTGCCTCAACCTTTTAGGAAAATCTGTTTAATACTTTAATGTCTTCTAAATGCGACCGTCCACTTTCTTCTGTGCTTCTGTTAAGAAAATGTGTTACCTTTGGAGATTGGATGATCAAAATTGAGGACTATATTAATCTGTGCCTAACATTTACTTTAGCTTGCTTAACTCAGTAATGGGAAAATATGTTGCCCTTTTAGGACACGGAAGCAAGTCCTTCCAGTAACAATTCTGAGGATGATGCTGTTCATCAGGATAACTTTGAGGCCTTGTCCAAATTAAAGGTCAGCAGCTGTTAAATTACCTCAACGGTCCACTTCCTATGACTTTTTTGAAGCTAATGCTTATTGCTGCCTGTCATTGAACTATATCAGCATGTTATTGACTTATTGTTGCATTTCTTTTTCTCAGGTGAAGGACTTGATGTCTCCAGTTAACGTTCATCTTGCACAGAACTTTACTAAACCTCCATCACGTTATTCCGAGAGTGCATTGGTTAGTACTAATACCTATATGTTACTCTTTTATTTGTTCATTCTGAGCCATGCCTGCGATAGAAAAATGTTCCTTTTATTGGGCTTTCTCTGTAATTTAAGAATGTAAGGTTTCTTCCTTGGTACCTGCAGATTAAAAGACTAGAAGAACTTGGAATCGGAGGGCCATCCACATACTCTTCTATAATGAAAGTATTGCAGGTGCCATATTCCTATGACCCACTCTCTTAGATCATGATATGCCCAAAATATAACCCATTGCCTTTTTTCATTTTCATATATATGCTGATTTTTGGGTTGGATGTTATGAACAAACTATGTAGCTTACAGCATGTTTGTGCTGGGTTGCTTTGCTTATGTTCCTGTGGTGCTGCATATGCCATGTGGTGCAACACAGGTCATATGGTAACTGTTGGACTTCAATTTACTTGCATCACCTTGGACCTTTCGAATCCAATGGAAGTTGAGTTGTATGTGGTTTGCAACGTGGAGCACTGGGGTCAGCACATACGTGGTCAGCTTGGCATTAAGCTGTGATCTGGCTTTAGAGTTCTTTGTAACATAATCTAAATCTGGAAACCAGGAGATACTGTATCTATGATGTTTGCCTGCCATTGGATGCAAGTCCATCTACAAATATATGACATAAATAAGGAAAGGTTCATAAAACATATCAGCCGCAAGACCCCAACTTGGATAGGCTGAGATTGATTAGGATCATCCCTGGGCAAAGTAGTACAACATACAATTTCTTTTTCAAATGTACATCCAGAGATGTTTGTTTTTGTTGGGGTCAACCACAATGTTACATGGACAAAACAAACAGTTGCAAAATAGTTGGAACTTGCATCATCATTAAATTAACAATGACTCAAGCCACATGGATAACAGTGTTTACCTCTTGCTATTCAGGATCGTAACCATGTGACAGTAAAAGGTCAAGTTGTGCACCCCGAATTCCGTGGTCGGATGGTAGGTTGTTTGCTCCTTATGTCATTTCCTTTTAGAAAGGTCTTATTTGGCAATAACATCTACAATCCTGATCACACATTGAATTTCTGTTATATTGATTTAAATAAAAGATGATACCTCTAGCTATATGTATTACTTGATCATATAATCCAATTGTGCCAAAGCATAAACCTTGTAAGGAAAATTACAGGTTAACTATAGTCCCTAAAGTCTTCAAGGCACCTAAACTATTTTTTATATGTGTATATACGATTCTTTCACTTCTCGCATCAATGTTGCTTATGGTAACTTTAATTAATTAAGTTGTTTTATTTCTTCTATTTTTGACATATGTTAACTGCCATCTCTTCCTTAGGTCTCAGCATTTCTTACACATCACTTCTCAGAAGTTGCAGATCTCAGCTTTACTGCTAACTTGGAGACTGAGGTAGTGAACAATTCTCAGTTTGTAGGTTATATCTACATCCCCTTTCTTTCTTATTCTTGAGATCAGAAACCAGCATAAGCTGGCTAGTTACTGCCACAGATTTGGTCAATGTGAATCCCAGTAATTTTGCAGTTTGATATCAGTATGAAAGTTTAGTCACACTTGTTTCAGAAGAGAATCTTAAACCCCATGTGCATAGAATAGTTTTTAAAAAATGTTTGTTTCCTTGTCCGTAATTGTTCTTGCATTTGAGACACATTGGTGGTATTTTATAGAAATGTGAAAATGACTAAATACAGAAGTTTTACTTGAGACTGGAGCTTGTTTGGTAAGTTTTTGCCTGAACTTGAGACTGGAGCAGGGCTGTCCTGGAAAAGCGCTTTACACCAAATAACTGGACAATACATTTATTGTGTAAACCCCTCTACTTTGTGATGTTGTTCATATGCTAATGTGCACCCCTTGTCAATTCTTTTTAACAAACAATGTTGTTACTACCAGGATGTCATTTTCTGATATGCCCATTTCTCTTGCACTTTCTGTTTGAGCAACATCAAGCAGTGTATCTGACTTGTGTTAAAAATAGAATTGTTGGCATATTGATAAAAATACACAAAGAAAGAAAAGGTTGATGAATATATGAACATCTTGAATGAGATATGCTAGTATATATGATGTCAATGAAAGTATTCTTGAAAATATTCTTATCACTCTACGTCCACTGACATGGGCTGGTATATGTGAAACCATAAAAACTTGGAGATAGATCTAAAAAATCTGATTAAATTTTGAAATTTTTCTCCAAGTTTTTCCCATCATGATAACTTAACCAGCAATTGTTATATTCTTATGAACAGCTAGCCCGCTTCACTAGTCCTAATATGATAATTCTGAAGTTGGTATAAACATACTAATATCCCTTTCCTACTGCTTTATTAGCTTGATAACGTCTCTGCTGGATCAACTGAATGGAAAGGCCTTCTGAAAGATTTTTGGGAACGATTCAATAAATATTGTGGCAATGCTAGTCGCCTTCAAGTCAGGAAGGTACTACCTTTTTCACGTCTCTTCTGGAAGATTTATTCACCCTTGCAGCTAAAAAGAAAAATACTCCCTTTCCTGATTTTTCATAAGGTGCAATTGCCTTTAAAGATTCAAACTTTGTAATTTTTAACTCATGACTATATATGTTTGTTGACACAAAAGTTGTATTGGATTTATATTCAAATTATTTTCATATGATCTTGGTCTTCTACTCTTCTAATTTAACTTTTAGAAATTTACCTAATGGAGGGAGAATAATTCCTAGAACTGTATGACTACTGTCTCTAGTTATCAGATGATGCACAGTCAAGTTTATTTCTCTCACATGATCACATCAACTTTTGTCAAGACATAGCAACTGGGTTAAGGGTGTGTTCTTTACCACCTCTTTCCAAGTACTTCCTTGTTTTCCACGCGCATGCTTCCCAAACTGAACGGTGTGTGTTTTGTAAAAAAAAAATTATAGAAAAGTTGCTTTAAAAATCATATTAATCTATTTTTCAAGTTTAATTTAGCTAATGCTTAATTTATCATGTGCTAATGGATCGCTCCGTTTTGCATCCGGGGAGAAGTTCCCAACCTCCACCTCTGAACGCAGCTCAAAAGACTGGTTTCTGTGAGTAGGTTCTAAAAATTTTGATGGTTGCTAGGATGCTTGTAACTTGCAAACCCCACATTTCTTCTGAGGAATAAGATATGAGAAATGTTGGGCTATGATCTTGTTCGTTCTCCCTACAGATGCTTCCACTTATGAACTCAGGCTACTAGCAATGGAAGAAAAGAACTGCTAGTAAATACAATTGTGGCTGAGCCCATGTTCTTGTCCAAAAAGTGCCCGATTTGCTTTATTTTCCCTTTTCTTTCCAGTGCCCCATATATTACGGGTAGAGGGATATGGATGAAAAACGAAACAACATGGTTAACTCATTGAGATTTATATTACTGGGCTTTGGGTTTCTGCCTGATTTCCACCCACCTGCTCAGATTTGTGCATCTTTATACCAGTCATTACTCATTAGCAAATTGTACTGTTTACTATAGATCTGTAATCCCTTTAGCATTGAAAACGGTATTTTAACTAACTATCCACTTTGTTGCAGGTAGAGAGAATGCTTGAAGAAAAATTTGGTTCCATCCTCTTTCCTGACCTTGACAATGATAGTAGGATATGCCCTAGGTAATTCATCTCATTACGTCTAAGAAGTTGTTTTCTACTTTGTAGAAGGTTCACATTTATTTTGCCATAAAATATGTATGGTGCTATATTCCTACAGATTAATTTGGTATCGCTAACCTGTCATGCTATCCTTATGATTGCAATATCTGCAGTTGTTCTGAAGGAACTCTGAGATTGAAAGTAAGTAAGCATGGTGAAGGATATTTTATAGGTTGTGATCGACATCCGAAATGCAAGTATGACCATATGATCCTCTCTTAGAAATTATCAATTCGTTGAGTTTAATCCTTGCTATTATCCATGTTACTTCTGTTTATAAACTATGATTTAAGCATTTATTGTTTATAATTGAGAGCACCATGCGTACCAAACTTGAAGGTACATTGCTCGCACATTGTCGGTTGAAGTTGATGAAACTGAGGCATCTGATGAAATTCAAAGCACTTTTACACCTAGGTTACTTGGGGTGCTACCTGATTCTGATGAGAAGGTATATTCTAGTCTTATGGTTATCCTGCTTTGTTATTTTTCTTGTACAGAATGTTTATGATATTTTGTTGCTTGTTTTACAGGTATTTCTGAAACAAGGTCCTTACGGTCACTATATCCAGGTTGGAGAGGATATAAAAGGAGTGTCTCGGAAAAGAGCTCCTCTTTCTGAAGTAATTTCCATATTAATATGTTTCTTAAATGCAGAGCAAGCTTGTGTTTGGCAATTTCTGATCTACCTTTTTCAAGAACTCAACCTCAGCTATGATTCACCCTAATTTCAGGTGAAAGATATTGACTCAATCACTTTAGAAGATGCAATCGAGCTATTGCAGTATCCCAAAATCCTGGTATGCGCAACATTTTAGCTGCTAATTAAGTTCACGTTGATGAGCTGCCCCATGATGATATTGTTGTCTGATTGATGTCTAACAGGGAAAACACCCTGATGATGATCTTCCTGTACTTGTAACACATTCTAAATCTGGATTTAGAATCAGACACAGGAGAACTCTTGCTCCATTGCCGAAGGTACGTGTTCTAATATTGTACTATCTGTTGAATGTTGGTACCACACACACCATTATGATACTACGCGAATACAAACGCGCAATGTTTAGTTCTTTTGTGCTGGCGCTATTGTTTTCTGCTATACTACAATTGAACAAAACTTTTAACTGCTGAGATGCATATATTTCTTCAAAATTGTTTGTGACAGAGCGCAGACCCAAAGGAGATTACGCTCGAGCGTGCATTGAAGCTTTTGACAGGTAAAAACGTGATAAGGTTTGGTCGCCCTAAGGGAATCAAGAACCCAGAACCCCTTGAATACCATTCGTAAACATCTAATATTGTAAAAGAGATGTTTTTAGTCTAACAAGATCGCTTATCGAACGCGAAATTTACGGTGATTCCTGACCGGCATTGTTTGAAGCCATGGATTCCGCTTTCTTCCTTTTTTTGCCTAATCCTGAGTCGGCTTTTGTATGCTTTAGGGGTGTACGGTGAGTTTGATAATGTGGAGAGATCGTCACTCACACCGTCACACGTACGTTCACGGTGTGTAGCAGCGTACACCCTCCGTACCAACAAAAAAAAAATCCTTTTGTCCATATCAATCTCCAAAAGTTCTTTCTCGAAGCGGAGGGTGTAGGTGAGTGTGATCGTACCTGTGAGTGAATGGATGCAGTTCGTAAAAGTACTACTCACTGAAATGTGGGTTCCACAGCCCTTCAGATCCACATGTCAGTGAATACATGTAATACTGCAGGGGATCTTAATTGGTGAGTGAATATGACTGTGGTTGACAATGAAGATTTGGGCTCCCATCACATTTGTTTTTCCTTTCGTACACTACTGCCGAAACAAAGGCGAAGCATTTGCCCTCTTTTC
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| CDS seq | ATGAAAGTATTGCAGGATCGTAACCATGTGACAGTAAAAGGTCAAGTTGTGCACCCCGAATTCCGTGGTCGGATGGTCTCAGCATTTCTTACACATCACTTCTCAGAAGTTGCAGATCTCAGCTTTACTGCTAACTTGGAGACTGAGCTTGATAACGTCTCTGCTGGATCAACTGAATGGAAAGGCCTTCTGAAAGATTTTTGGGAACGATTCAATAAATATTGTGGCAATGCTAGTCGCCTTCAAGTCAGGAAGGTAGAGAGAATGCTTGAAGAAAAATTTGGTTCCATCCTCTTTCCTGACCTTGACAATGATAGTAGGATATGCCCTAGTTGTTCTGAAGGAACTCTGAGATTGAAAGTAAGTAAGCATGGTGAAGGATATTTTATAGGTTGTGATCGACATCCGAAATGCAAGTACATTGCTCGCACATTGTCGGTTGAAGTTGATGAAACTGAGGCATCTGATGAAATTCAAAGCACTTTTACACCTAGGTTACTTGGGGTGCTACCTGATTCTGATGAGAAGGTATTTCTGAAACAAGGTCCTTACGGTCACTATATCCAGGTTGGAGAGGATATAAAAGGAGTGTCTCGGAAAAGAGCTCCTCTTTCTGAAGTGAAAGATATTGACTCAATCACTTTAGAAGATGCAATCGAGCTATTGCAGTATCCCAAAATCCTGGGAAAACACCCTGATGATGATCTTCCTGTACTTGTAACACATTCTAAATCTGGATTTAGAATCAGACACAGGAGAACTCTTGCTCCATTGCCGAAGAGCGCAGACCCAAAGGAGATTACGCTCGAGCGTGCATTGAAGCTTTTGACAGGTAAAAACGTGATAAGGTTTGGTCGCCCTAAGGGAATCAAGAACCCAGAACCCCTTGAATACCATTCGTAA
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| Protein seq | MKVLQDRNHVTVKGQVVHPEFRGRMVSAFLTHHFSEVADLSFTANLETELDNVSAGSTEWKGLLKDFWERFNKYCGNASRLQVRKVERMLEEKFGSILFPDLDNDSRICPSCSEGTLRLKVSKHGEGYFIGCDRHPKCKYIARTLSVEVDETEASDEIQSTFTPRLLGVLPDSDEKVFLKQGPYGHYIQVGEDIKGVSRKRAPLSEVKDIDSITLEDAIELLQYPKILGKHPDDDLPVLVTHSKSGFRIRHRRTLAPLPKSADPKEITLERALKLLTGKNVIRFGRPKGIKNPEPLEYHS |
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| Function | DNA topoisomerase 1 [UniProtKB/Swiss-Prot:Q9ZDK2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g27440 | LOC_Os02g27440.2 | Chr02 | 16172700 | 16180337 | + | MSU_osa1r7 | ||
| CDS seq | ATGAAAGTATTGCAGGATCGTAACCATGTGACAGTAAAAGGTCAAGTTGTGCACCCCGAATTCCGTGGTCGGATGGTCTCAGCATTTCTTACACATCACTTCTCAGAAGTTGCAGATCTCAGCTTTACTGCTAACTTGGAGACTGAGCTTGATAACGTCTCTGCTGGATCAACTGAATGGAAAGGCCTTCTGAAAGATTTTTGGGAACGATTCAATAAATATTGTGGCAATGCTAGTCGCCTTCAAGTCAGGAAGGTAGAGAGAATGCTTGAAGAAAAATTTGGTTCCATCCTCTTTCCTGACCTTGACAATGATAGTAGGATATGCCCTAGTTGTTCTGAAGGAACTCTGAGATTGAAAGTAAGTAAGCATGGTGAAGGATATTTTATAGGTTGTGATCGACATCCGAAATGCAAGTACATTGCTCGCACATTGTCGGTTGAAGTTGATGAAACTGAGGCATCTGATGAAATTCAAAGCACTTTTACACCTAGGTTACTTGGGGTGCTACCTGATTCTGATGAGAAGGTATTTCTGAAACAAGGTCCTTACGGTCACTATATCCAGGTTGGAGAGGATATAAAAGGAGTGTCTCGGAAAAGAGCTCCTCTTTCTGAAGTGAAAGATATTGACTCAATCACTTTAGAAGATGCAATCGAGCTATTGCAGTATCCCAAAATCCTGGGAAAACACCCTGATGATGATCTTCCTGTACTTGTAACACATTCTAAATCTGGATTTAGAATCAGACACAGGAGAACTCTTGCTCCATTGCCGAAGAGCGCAGACCCAAAGGAGATTACGCTCGAGCGTGCATTGAAGCTTTTGACAGGTAAAAACGTGATAAGGTTTGGTCGCCCTAAGGGAATCAAGAACCCAGAACCCCTTGAATACCATTCGTAA
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| Protein seq | MKVLQDRNHVTVKGQVVHPEFRGRMVSAFLTHHFSEVADLSFTANLETELDNVSAGSTEWKGLLKDFWERFNKYCGNASRLQVRKVERMLEEKFGSILFPDLDNDSRICPSCSEGTLRLKVSKHGEGYFIGCDRHPKCKYIARTLSVEVDETEASDEIQSTFTPRLLGVLPDSDEKVFLKQGPYGHYIQVGEDIKGVSRKRAPLSEVKDIDSITLEDAIELLQYPKILGKHPDDDLPVLVTHSKSGFRIRHRRTLAPLPKSADPKEITLERALKLLTGKNVIRFGRPKGIKNPEPLEYHS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g27440 | LOC_Os02g27440.3 | Chr02 | 16172700 | 16180337 | + | MSU_osa1r7 | ||
| CDS seq | ATGGTCTCAGCATTTCTTACACATCACTTCTCAGAAGTTGCAGATCTCAGCTTTACTGCTAACTTGGAGACTGAGCTTGATAACGTCTCTGCTGGATCAACTGAATGGAAAGGCCTTCTGAAAGATTTTTGGGAACGATTCAATAAATATTGTGGCAATGCTAGTCGCCTTCAAGTCAGGAAGGTAGAGAGAATGCTTGAAGAAAAATTTGGTTCCATCCTCTTTCCTGACCTTGACAATGATAGTAGGATATGCCCTAGTTGTTCTGAAGGAACTCTGAGATTGAAAGTAAGTAAGCATGGTGAAGGATATTTTATAGGTTGTGATCGACATCCGAAATGCAAGTACATTGCTCGCACATTGTCGGTTGAAGTTGATGAAACTGAGGCATCTGATGAAATTCAAAGCACTTTTACACCTAGGTTACTTGGGGTGCTACCTGATTCTGATGAGAAGGTATTTCTGAAACAAGGTCCTTACGGTCACTATATCCAGGTTGGAGAGGATATAAAAGGAGTGTCTCGGAAAAGAGCTCCTCTTTCTGAAGTGAAAGATATTGACTCAATCACTTTAGAAGATGCAATCGAGCTATTGCAGTATCCCAAAATCCTGGGAAAACACCCTGATGATGATCTTCCTGTACTTGTAACACATTCTAAATCTGGATTTAGAATCAGACACAGGAGAACTCTTGCTCCATTGCCGAAGGTACGTGTTCTAATATTGTACTATCTGTTGAATGTTGGTACCACACACACCATTATGATACTACGCGAATACAAACGCGCAATGTTTAGTTCTTTTGTGCTGGCGCTATTGTTTTCTGCTATACTACAATTGAACAAAACTTTTAACTGCTGA
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| Protein seq | MVSAFLTHHFSEVADLSFTANLETELDNVSAGSTEWKGLLKDFWERFNKYCGNASRLQVRKVERMLEEKFGSILFPDLDNDSRICPSCSEGTLRLKVSKHGEGYFIGCDRHPKCKYIARTLSVEVDETEASDEIQSTFTPRLLGVLPDSDEKVFLKQGPYGHYIQVGEDIKGVSRKRAPLSEVKDIDSITLEDAIELLQYPKILGKHPDDDLPVLVTHSKSGFRIRHRRTLAPLPKVRVLILYYLLNVGTTHTIMILREYKRAMFSSFVLALLFSAILQLNKTFNC
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g27440 | LOC_Os02g27440.4 | Chr02 | 16172700 | 16180337 | + | MSU_osa1r7 | ||
| CDS seq | ATGAAAGTATTGCAGGATCGTAACCATGTGACAGTAAAAGGTCAAGTTGTGCACCCCGAATTCCGTGGTCGGATGGTCTCAGCATTTCTTACACATCACTTCTCAGAAGTTGCAGATCTCAGCTTTACTGCTAACTTGGAGACTGAGCTTGATAACGTCTCTGCTGGATCAACTGAATGGAAAGGCCTTCTGAAAGATTTTTGGGAACGATTCAATAAATATTGTGGCAATGCTAGTCGCCTTCAAGTCAGGAAGGTAGAGAGAATGCTTGAAGAAAAATTTGGTTCCATCCTCTTTCCTGACCTTGACAATGATAGTAGGATATGCCCTAGTTGTTCTGAAGGAACTCTGAGATTGAAAGTAAGTAAGCATGGTGAAGGATATTTTATAGGTTGTGATCGACATCCGAAATGCAAGTATGACCATATGATCCTCTCTTAG
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| Protein seq | MKVLQDRNHVTVKGQVVHPEFRGRMVSAFLTHHFSEVADLSFTANLETELDNVSAGSTEWKGLLKDFWERFNKYCGNASRLQVRKVERMLEEKFGSILFPDLDNDSRICPSCSEGTLRLKVSKHGEGYFIGCDRHPKCKYDHMILS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.059450 | 0.869180 | 0.369274 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g16980 | RBH | 5.156320 | 4.742339 | 0.849832 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0016870 | RBH | 0.753879 | 3.154313 | 6.166597 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0016980 | RBH | 0.210271 | 1.541392 | 2.145167 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0016880 | RBH | 2.301311 | 4.801648 | 8.063092 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0016750 | RBH | 0.134622 | 0.128122 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0016670 | RBH | 6.635843 | 4.293010 | 11.896700 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0270500 | RBH | 5.7920345 | 14.592307 | 9.33479 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0016440 | RBH | 0.480810 | 0.180615 | 1.702510 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0291300 | RBH | 4.677036 | 11.4153395 | 12.30746 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0016990 | RBH | 0.445664 | 0.034376 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0016540 | RBH | 0.528981 | 1.573711 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0017090 | RBH | 6.612318 | 4.752600 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0016860 | RBH | 0.817162 | 0.482238 | 0.664049 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0016610 | RBH | 0.232524 | 0.311583 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G017040 | RBH | 0.155466 | 1.640175 | 1.178720 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0016750 | RBH | 2.314850 | 14.475444 | 8.840847 |
