Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g15000 | OGI:02013220 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:8367222-8368328 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACCCAGTAATTTCCTTCAATTCTCCAAGTACATATACAGTTTAACAGTTTATATACAGTGCTGTTTGTTAAATGAGAAAAAGAATAAGCACAAGCAAAAGAATGCAAGAACGGCGTAGAGCATCTCGCTGACTACACCATTTGAGCCGGCAATGGCGGCGCCGCCGTGGCGAAGGCGTTGCGCCGGCAGACCGGGCAGGTGGAGTTGCCCCGCAGCCACGCGTCGATGCACCGCTGGTGGAACACGTGCAGGCACGCCGGCAGCCGCTTCGCCATCTCCCCCTTCTCCACCTCGCCGAGGCACACCGCGCACTCCGGCGCCGCCGCCGCGCCGCCCTCGCCCTCTCCCGCAGGCGGCTGCTCGTACGCGGGGATGTCGTCCGCCGTCGCCACCCGCGCGCCTCCGCCTCCGCGCACGGTCGGCGTCTCCCGTGGCTGCACGCCGTCGCGCAGGTGGCTCGGCAGGCCATCGCCGCCGCCGCCGTTCCGGCGCGGGAGCAGCGCGCGCGCGCACCGGGAGAGCGCGTCCCGGACAGGAGCCAGCGGGCGCCGCAGCGACGCCCACGGGAAGAACGCGCCGCAGAAGGAGGCGTAGACGCAGGAGCCGACGGCGACCCAGAGCGCCAGGAAGAGGGAGAGCACGACGAGGGACCCCGCGTCGCCGCCCGTCCGCGACACCTGCACGATCCCGTAGACGATCATCGCCGCGCCGCCGATGCACACGCCGTTGGCGATCGCCAGCATGTAGCACCGCACGAACCAATCCATGGCGCGCCGCCCCGGCCGCCCGCCGCCGTACGTCGACGACGAACCACGGGCGCGGCGGCGACGCGATGGTCGCGCGTGTGGTTTTTCTTGGGGAATTTGGACCTTACAGGGGCGAGGTCTCGTGGACGCCAGCAGCGTCGATAGCGATTTTTGCCGCGAGATTTCGTAGTTTTTGCGCTATGTCGCAGCGACGCTTGCCTGGGGTAGGCTTGAACTGTGCGTGTCTTTTACTCGGCTAAGCCATCGCACAGATCGTCTTATGGGGGATTAATTTTTGGTTCAGAATTCTTGCAGAACAAGAAGCACTGGTTAATCTGTGAGCCGATGACAATATACTACT
More
|
||||||||||
| CDS seq | ATGGATTGGTTCGTGCGGTGCTACATGCTGGCGATCGCCAACGGCGTGTGCATCGGCGGCGCGGCGATGATCGTCTACGGGATCGTGCAGGTGTCGCGGACGGGCGGCGACGCGGGGTCCCTCGTCGTGCTCTCCCTCTTCCTGGCGCTCTGGGTCGCCGTCGGCTCCTGCGTCTACGCCTCCTTCTGCGGCGCGTTCTTCCCGTGGGCGTCGCTGCGGCGCCCGCTGGCTCCTGTCCGGGACGCGCTCTCCCGGTGCGCGCGCGCGCTGCTCCCGCGCCGGAACGGCGGCGGCGGCGATGGCCTGCCGAGCCACCTGCGCGACGGCGTGCAGCCACGGGAGACGCCGACCGTGCGCGGAGGCGGAGGCGCGCGGGTGGCGACGGCGGACGACATCCCCGCGTACGAGCAGCCGCCTGCGGGAGAGGGCGAGGGCGGCGCGGCGGCGGCGCCGGAGTGCGCGGTGTGCCTCGGCGAGGTGGAGAAGGGGGAGATGGCGAAGCGGCTGCCGGCGTGCCTGCACGTGTTCCACCAGCGGTGCATCGACGCGTGGCTGCGGGGCAACTCCACCTGCCCGGTCTGCCGGCGCAACGCCTTCGCCACGGCGGCGCCGCCATTGCCGGCTCAAATGGTGTAG
More
|
||||||||||
| Protein seq | MDWFVRCYMLAIANGVCIGGAAMIVYGIVQVSRTGGDAGSLVVLSLFLALWVAVGSCVYASFCGAFFPWASLRRPLAPVRDALSRCARALLPRRNGGGGDGLPSHLRDGVQPRETPTVRGGGGARVATADDIPAYEQPPAGEGEGGAAAAPECAVCLGEVEKGEMAKRLPACLHVFHQRCIDAWLRGNSTCPVCRRNAFATAAPPLPAQMV |
||||||||||
| Function | RING-H2 finger protein ATL32 [UniProtKB/Swiss-Prot:Q8W571] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g15000 | LOC_Os02g15000.1 | Chr02 | 8367222 | 8368328 | - | MSU_osa1r7 | ||
| CDS seq | ATGGATTGGTTCGTGCGGTGCTACATGCTGGCGATCGCCAACGGCGTGTGCATCGGCGGCGCGGCGATGATCGTCTACGGGATCGTGCAGGTGTCGCGGACGGGCGGCGACGCGGGGTCCCTCGTCGTGCTCTCCCTCTTCCTGGCGCTCTGGGTCGCCGTCGGCTCCTGCGTCTACGCCTCCTTCTGCGGCGCGTTCTTCCCGTGGGCGTCGCTGCGGCGCCCGCTGGCTCCTGTCCGGGACGCGCTCTCCCGGTGCGCGCGCGCGCTGCTCCCGCGCCGGAACGGCGGCGGCGGCGATGGCCTGCCGAGCCACCTGCGCGACGGCGTGCAGCCACGGGAGACGCCGACCGTGCGCGGAGGCGGAGGCGCGCGGGTGGCGACGGCGGACGACATCCCCGCGTACGAGCAGCCGCCTGCGGGAGAGGGCGAGGGCGGCGCGGCGGCGGCGCCGGAGTGCGCGGTGTGCCTCGGCGAGGTGGAGAAGGGGGAGATGGCGAAGCGGCTGCCGGCGTGCCTGCACGTGTTCCACCAGCGGTGCATCGACGCGTGGCTGCGGGGCAACTCCACCTGCCCGGTCTGCCGGCGCAACGCCTTCGCCACGGCGGCGCCGCCATTGCCGGCTCAAATGGTGTAG
More
|
|||||||
| Protein seq | MDWFVRCYMLAIANGVCIGGAAMIVYGIVQVSRTGGDAGSLVVLSLFLALWVAVGSCVYASFCGAFFPWASLRRPLAPVRDALSRCARALLPRRNGGGGDGLPSHLRDGVQPRETPTVRGGGGARVATADDIPAYEQPPAGEGEGGAAAAPECAVCLGEVEKGEMAKRLPACLHVFHQRCIDAWLRGNSTCPVCRRNAFATAAPPLPAQMV
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0248100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g11480 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0248100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0010660 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0010740 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0010620 | SBH | 0.000000 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0010440 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0010570 | SBH | 0.263175 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0138000 | RBH | 0.043411 | 1.5457015 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0010330 | RBH | 0.026031 | 0.200497 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0145600 | RBH | 0.057 | 1.539451 | 0.019385 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0010860 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0010480 | SBH | 0.0 | 0.973875 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0010830 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0010830 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0010500 | RBH | 0.149334 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G010730 | SBH | 0.045426 | 0.221712 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0010530 | RBH | 0.0 | 0.0 | 0.0 |
