Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g11480 | OGI:01019800 | 10/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:6183125-6183625 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACTCCACTGTGCCACGAGGCACGTGCCTGCGTCGTGGAGCTGTCGGCCTCGCCGGCACCGGCACGTCGGCGCGGCACAGGGGGCACGTCGGCCGCAGGCGCAGCCAGGCGTCGACGCAGCGGGCGTGGAAGGCGTGCGGGCAGCAGGGGAGCGCGCGCACCGTCTCCCCTTCCTCCACGGCGCCCAGGCACACCGCGCACTCCGCCGCCGCCGCCGCCGCACTACCTCCGCGGCGGGGAGGGAGCACGAAGCAGGGCAGCCGCGCAATGGCGGCGGAGTCGAGGCCGCCTCCCGACGACGAGCCGCCGATCCCGGCGCCGACCGCCGCCTGGAGCTCGCTCAGGCTGTCGACCAGGTGGTTCGCGTAGAGCACCGCGGCGTACCGCAGGACGACGATGGCGAGGGAGAACACCACGAGCTCCAGCGCCAGCCCGTCGTAGTACTGGCCGATCAGTGCGCTCACAACTTCAACGCCGTCCACGGCGCCCACCGTCGCCAT
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| CDS seq | ATGGCGACGGTGGGCGCCGTGGACGGCGTTGAAGTTGTGAGCGCACTGATCGGCCAGTACTACGACGGGCTGGCGCTGGAGCTCGTGGTGTTCTCCCTCGCCATCGTCGTCCTGCGGTACGCCGCGGTGCTCTACGCGAACCACCTGGTCGACAGCCTGAGCGAGCTCCAGGCGGCGGTCGGCGCCGGGATCGGCGGCTCGTCGTCGGGAGGCGGCCTCGACTCCGCCGCCATTGCGCGGCTGCCCTGCTTCGTGCTCCCTCCCCGCCGCGGAGGTAGTGCGGCGGCGGCGGCGGCGGAGTGCGCGGTGTGCCTGGGCGCCGTGGAGGAAGGGGAGACGGTGCGCGCGCTCCCCTGCTGCCCGCACGCCTTCCACGCCCGCTGCGTCGACGCCTGGCTGCGCCTGCGGCCGACGTGCCCCCTGTGCCGCGCCGACGTGCCGGTGCCGGCGAGGCCGACAGCTCCACGACGCAGGCACGTGCCTCGTGGCACAGTGGAGTGA
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| Protein seq | MATVGAVDGVEVVSALIGQYYDGLALELVVFSLAIVVLRYAAVLYANHLVDSLSELQAAVGAGIGGSSSGGGLDSAAIARLPCFVLPPRRGGSAAAAAAECAVCLGAVEEGETVRALPCCPHAFHARCVDAWLRLRPTCPLCRADVPVPARPTAPRRRHVPRGTVE |
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| Function | RING-H2 finger protein ATL40 [UniProtKB/Swiss-Prot:Q9SLC4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g11480 | LOC_Os01g11480.1 | Chr01 | 6183125 | 6183625 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGACGGTGGGCGCCGTGGACGGCGTTGAAGTTGTGAGCGCACTGATCGGCCAGTACTACGACGGGCTGGCGCTGGAGCTCGTGGTGTTCTCCCTCGCCATCGTCGTCCTGCGGTACGCCGCGGTGCTCTACGCGAACCACCTGGTCGACAGCCTGAGCGAGCTCCAGGCGGCGGTCGGCGCCGGGATCGGCGGCTCGTCGTCGGGAGGCGGCCTCGACTCCGCCGCCATTGCGCGGCTGCCCTGCTTCGTGCTCCCTCCCCGCCGCGGAGGTAGTGCGGCGGCGGCGGCGGCGGAGTGCGCGGTGTGCCTGGGCGCCGTGGAGGAAGGGGAGACGGTGCGCGCGCTCCCCTGCTGCCCGCACGCCTTCCACGCCCGCTGCGTCGACGCCTGGCTGCGCCTGCGGCCGACGTGCCCCCTGTGCCGCGCCGACGTGCCGGTGCCGGCGAGGCCGACAGCTCCACGACGCAGGCACGTGCCTCGTGGCACAGTGGAGTGA
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| Protein seq | MATVGAVDGVEVVSALIGQYYDGLALELVVFSLAIVVLRYAAVLYANHLVDSLSELQAAVGAGIGGSSSGGGLDSAAIARLPCFVLPPRRGGSAAAAAAECAVCLGAVEEGETVRALPCCPHAFHARCVDAWLRLRPTCPLCRADVPVPARPTAPRRRHVPRGTVE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0212700 | SBH | 0.0 | 0.0 | 3.126590 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g34880 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0212700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0008200 | SBH | 0.0 | 0.0 | 1.220803 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0007850 | SBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0008190 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0007710 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0007840 | SBH | 0.0 | 0.0 | 2.148210 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0100800 | RBH | 0.1274125 | 0.124628 | 0.109151 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0007760 | SBH | 0.0 | 0.0 | 0.120828 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0102100 | SBH | 0.1482865 | 0.392724 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0009600 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0007820 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0007820 | RBH | 0.0 | 11.559965 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0007830 | RBH | 0.0 | 0.318332 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0007730 | SBH | 0.0 | 0.375007 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G007810 | RBH | 0.0 | 0.0 | 0.437055 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0007640 | RBH | 0.0 | 0.0 | 0.0 |
