Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g12440 | OGI:02019120 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:6487390-6490577 | ||||||||
| Gene Symbol | OsGIRL1, OsGIRL1-1, OsGIRL1-2, OsGIRL1-3 | ||||||||||
| DNA seq | CGATTCCGCAATGCTTGGGAAGAAACCAGAACATGCTGTCAGTAGTGAACTTCGATGGAAATCAGCTTGAAGCAACCAATGATGCTGATTGGGGCTTCATGACTAGTCTAACCAATTGCAGCAATATGATACTGATAGATGTTAGTATCAACAAACTCCAAGGTGTGCTACCAAAAGCAATTGGTAATATGTCAACACAATTGGAGTATTTCGGCATAACAAACAACAATATAACAGGAACAATACCTGAATCAATAGGGAACCTCGTCAACTTGGATGAACTTGACATGGAAAACAATCTTCTCATGGGGAGCCTTCCCGCATCTCTCGGCAATCTCAAGAAGTTGAATAGATTGTCTTTGTCAAATAACAATTTTTCAGGATCCATCCCAGTAACTCTTGGCAATCTTACAAAACTTACAATCCTTTTGCTTAGTACCAATGCACTGAGTGGAGCTATACCTTCTACTCTCAGCAATTGTCCTTTAGAAATGGTGGACCTTTCTTACAACAACCTTTCCGGCCCGATACCGAAGGAACTTTTTCTTATCTCCACAATATCAAGTTTCCTGTATCTTGCGCACAATAAATTAACTGGGAATTTGCCTTCAGAAGTGGGAAATCTCAAGAATCTTGATGAACTCGACCTCTCTGATAATACGATTTCAGGAAAGATCCCTACCACCATTGGAGAATGCCAGAGCTTACAGTATCTCAATTTATCTAGGAACTTCATCGAGGACACAATTCCTCCGTCACTGGAACAATTAAGGGGGCTCCTAGTACTTGATCTTTCTCAAAATAATTTGTCTGGAACAATCCCTAGATTCCTAGGTAGCATGACAGGTCTTTCTACTCTGAATCTTTCAAGCAATGATTTCGAAGGTGAAGTTCCAAAATATGGAATATTTCTTAATGCAACTGCAACCTCTGTCATGGGAAACAATGACTTGTGTGGTGGGGCGCCTCAACTGAAGTTGCCAAAATGCTCAAATCAAACTAAACATGGGCTGTCTTCAAAGATCATCATAATTATCATTGCAGGAAGCACAATTTTGTTTCTCATTCTATTCACATGCTTTGCGCTACGTCTAAGGACTAAGCTTAGAAGAGCAAACCCAAAGATACCGCTCTCCGATAAGCAACATATGAGAGTTTCTTATGCTCAGTTGTCCAAAGCAACAAATAGTTTTGCATCTGAGAACCTCATTGGAGTGGGCAGCTTTGGTGCAGTGTACCAAGGAAGAATTGGGATCTCTGACCAACAATTGGTGGTTGCAGTGAAGGTGCTCAACTTGCAACAAGCTGGTGCGTATCGAAGTTTTGATGCAGAATGTGAGGCTTTGAGATGTATTCGCCATCGGAATCTTGTAAAGATTCTTACAGTTTGCTCAGGTATTGATTTCCAAGGTAGTGACTTCAAGGCGCTTGTATTTGAGTTCCTGCCAAATGGAAATTTAGACCAGTGGCTACACAAGCATCTTGAGGAAGAAGGTGAACCTAAGGTGCTAAATCTCGTTGAAAGACTCCAAATTGCGATAGATGTGGCTTCTGCACTTGAATACTTACATCAGCACAAGCCATGTCCAATTGTTCACTGTGATCTGAAGCCAAGCAATATTCTTCTTGACAATGACATGGTTGCTCATGTTGGTGATTTTGGGCTTGCAAGGTTCCTTCATCAAGAACACAGCAATAGTTCAGATAAATCAACTGGTTGGAATGCAATAAGAGGAACAATTGGCTATGTTGCCCCAGGTGTGCACAATTCTATCATCATCTTGTTGCATTTGTTTCTTTACTTCATTCCACCTAAATAAGCTTACTAAGTTCTTTATGTTTGTTTATTCCAGAGTATGGATTGGGCAATGAAGTCTCAATCCATGGAGACGTCTACAGCTATGGCATACTTTTGCTGGAGATGTTCACTGGAAAAAGGCCAACAAACAGTGAATTCGGCGATGTTCTTACTCTTCATGAGTATGTAGAAACAGCGCTGCCAGACCAAACAACTAGTGTCATTGACCAAAGCCTACTAGATGCGACATGGAATAGCGAAGGAACAGCTCAAAAGTACCACGACATCGAAGAGATAAGAACTGAGTGCATTGTTTCAATTCTGAAGGTCGGAATATTGTGCTCAAAAGAGATACCAACTGATCGGATGCAAATTGGGGATGCATTGAGAGAGTTGCAGGCAATTAGAGATAGGTTTGATACACATCAGCTATAGTAGCCTATATCTTGATGAAGTGGTGCAGCATATCAAAGTCATGCTTGTGCATGAAATATTCTACTTCGTACTATTTATCTGTTGAGGGTCATGCACTTATCAGTCAAGTAAGTCTGCAAGAAGACACTGGAGGCTGAACATGCTCTACTGAAGATTTTAGGAGTTGGAAGCTAAAAACGGATATCGAGTATCATGGAAGAAGCAAAACATCTTCAGCTAAGGAAAAGGAGGAAGTTAATTGAAATAAACTAGGGCAAAATGCTGTACTACATTATCAAGCAAAAATATTGTACTCGAGCAGCTACAGTCAGCTTATGGCCACACCTACACAACACTCTGTAATGGCTGAGAGGTATACTAAATAAGAGCCTATAGCAATTCGTATTGCAGGGCATCCAATTAGCTACTCATTTTCGCTCTTCGCACATATAATTCTTGACTGAGCAATTCATAAACATGTCAACATGGCAGTGCCTGACTTGGCTAATACTGTTGACAACTGTTGCAATAAGCAGCACAAGATAGCGACGTAAGAACCTCCATCTGTCATAGAAGTAGACATGAGAATTGTTAACACAACTTTTGTTCTGAATATTGGAATTTCTTGTTCAAATTCAACGAATCTCCCACAAAGTAAGAGATGCAACCAATAAGAAAAAGGTTTAACAGGGATTTGCTCCGAGAATGGAGCATCAACCCATGAAGCAGTACAAGGTATTTCCAGTGCAGGTCATCTTGAAACTATTGCACAACTCAAAAAAGGTCAATCTTGATCCAGGGGCTCTTGGCTAAGGCCCTGGATGTGGTCTATTCTACTGTAGACTGGCCCTCCCCTTAAGAGTTAGGTTTAGAATTTTGGATCGATTGATCACAGCCGAATTTGGAATGCAGGAATCTTGTCTTGTCCATGCAAAAGATTTGAGCATTTATATGCACTTTTAAGAAAAATCATCTG
More
|
||||||||||
| CDS seq | ATGCTGTCAGTAGTGAACTTCGATGGAAATCAGCTTGAAGCAACCAATGATGCTGATTGGGGCTTCATGACTAGTCTAACCAATTGCAGCAATATGATACTGATAGATGTTAGTATCAACAAACTCCAAGGTGTGCTACCAAAAGCAATTGGTAATATGTCAACACAATTGGAGTATTTCGGCATAACAAACAACAATATAACAGGAACAATACCTGAATCAATAGGGAACCTCGTCAACTTGGATGAACTTGACATGGAAAACAATCTTCTCATGGGGAGCCTTCCCGCATCTCTCGGCAATCTCAAGAAGTTGAATAGATTGTCTTTGTCAAATAACAATTTTTCAGGATCCATCCCAGTAACTCTTGGCAATCTTACAAAACTTACAATCCTTTTGCTTAGTACCAATGCACTGAGTGGAGCTATACCTTCTACTCTCAGCAATTGTCCTTTAGAAATGGTGGACCTTTCTTACAACAACCTTTCCGGCCCGATACCGAAGGAACTTTTTCTTATCTCCACAATATCAAGTTTCCTGTATCTTGCGCACAATAAATTAACTGGGAATTTGCCTTCAGAAGTGGGAAATCTCAAGAATCTTGATGAACTCGACCTCTCTGATAATACGATTTCAGGAAAGATCCCTACCACCATTGGAGAATGCCAGAGCTTACAGTATCTCAATTTATCTAGGAACTTCATCGAGGACACAATTCCTCCGTCACTGGAACAATTAAGGGGGCTCCTAGTACTTGATCTTTCTCAAAATAATTTGTCTGGAACAATCCCTAGATTCCTAGGTAGCATGACAGGTCTTTCTACTCTGAATCTTTCAAGCAATGATTTCGAAGGTGAAGTTCCAAAATATGGAATATTTCTTAATGCAACTGCAACCTCTGTCATGGGAAACAATGACTTGTGTGGTGGGGCGCCTCAACTGAAGTTGCCAAAATGCTCAAATCAAACTAAACATGGGCTGTCTTCAAAGATCATCATAATTATCATTGCAGGAAGCACAATTTTGTTTCTCATTCTATTCACATGCTTTGCGCTACGTCTAAGGACTAAGCTTAGAAGAGCAAACCCAAAGATACCGCTCTCCGATAAGCAACATATGAGAGTTTCTTATGCTCAGTTGTCCAAAGCAACAAATAGTTTTGCATCTGAGAACCTCATTGGAGTGGGCAGCTTTGGTGCAGTGTACCAAGGAAGAATTGGGATCTCTGACCAACAATTGGTGGTTGCAGTGAAGGTGCTCAACTTGCAACAAGCTGGTGCGTATCGAAGTTTTGATGCAGAATGTGAGGCTTTGAGATGTATTCGCCATCGGAATCTTGTAAAGATTCTTACAGTTTGCTCAGGTATTGATTTCCAAGGTAGTGACTTCAAGGCGCTTGTATTTGAGTTCCTGCCAAATGGAAATTTAGACCAGTGGCTACACAAGCATCTTGAGGAAGAAGGTGAACCTAAGGTGCTAAATCTCGTTGAAAGACTCCAAATTGCGATAGATGTGGCTTCTGCACTTGAATACTTACATCAGCACAAGCCATGTCCAATTGTTCACTGTGATCTGAAGCCAAGCAATATTCTTCTTGACAATGACATGGTTGCTCATGTTGGTGATTTTGGGCTTGCAAGGTTCCTTCATCAAGAACACAGCAATAGTTCAGATAAATCAACTGGTTGGAATGCAATAAGAGGAACAATTGGCTATGTTGCCCCAGAGTATGGATTGGGCAATGAAGTCTCAATCCATGGAGACGTCTACAGCTATGGCATACTTTTGCTGGAGATGTTCACTGGAAAAAGGCCAACAAACAGTGAATTCGGCGATGTTCTTACTCTTCATGAGTATGTAGAAACAGCGCTGCCAGACCAAACAACTAGTGTCATTGACCAAAGCCTACTAGATGCGACATGGAATAGCGAAGGAACAGCTCAAAAGTACCACGACATCGAAGAGATAAGAACTGAGTGCATTGTTTCAATTCTGAAGGTCGGAATATTGTGCTCAAAAGAGATACCAACTGATCGGATGCAAATTGGGGATGCATTGAGAGAGTTGCAGGCAATTAGAGATAGGTTTGATACACATCAGCTATAG
More
|
||||||||||
| Protein seq | MLSVVNFDGNQLEATNDADWGFMTSLTNCSNMILIDVSINKLQGVLPKAIGNMSTQLEYFGITNNNITGTIPESIGNLVNLDELDMENNLLMGSLPASLGNLKKLNRLSLSNNNFSGSIPVTLGNLTKLTILLLSTNALSGAIPSTLSNCPLEMVDLSYNNLSGPIPKELFLISTISSFLYLAHNKLTGNLPSEVGNLKNLDELDLSDNTISGKIPTTIGECQSLQYLNLSRNFIEDTIPPSLEQLRGLLVLDLSQNNLSGTIPRFLGSMTGLSTLNLSSNDFEGEVPKYGIFLNATATSVMGNNDLCGGAPQLKLPKCSNQTKHGLSSKIIIIIIAGSTILFLILFTCFALRLRTKLRRANPKIPLSDKQHMRVSYAQLSKATNSFASENLIGVGSFGAVYQGRIGISDQQLVVAVKVLNLQQAGAYRSFDAECEALRCIRHRNLVKILTVCSGIDFQGSDFKALVFEFLPNGNLDQWLHKHLEEEGEPKVLNLVERLQIAIDVASALEYLHQHKPCPIVHCDLKPSNILLDNDMVAHVGDFGLARFLHQEHSNSSDKSTGWNAIRGTIGYVAPEYGLGNEVSIHGDVYSYGILLLEMFTGKRPTNSEFGDVLTLHEYVETALPDQTTSVIDQSLLDATWNSEGTAQKYHDIEEIRTECIVSILKVGILCSKEIPTDRMQIGDALRELQAIRDRFDTHQL |
||||||||||
| Function | Receptor kinase-like protein Xa21 [UniProtKB/Swiss-Prot:Q2R2D5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g12440 | LOC_Os02g12440.1 | Chr02 | 6487390 | 6490577 | + | MSU_osa1r7 | ||
| CDS seq | ATGCTGTCAGTAGTGAACTTCGATGGAAATCAGCTTGAAGCAACCAATGATGCTGATTGGGGCTTCATGACTAGTCTAACCAATTGCAGCAATATGATACTGATAGATGTTAGTATCAACAAACTCCAAGGTGTGCTACCAAAAGCAATTGGTAATATGTCAACACAATTGGAGTATTTCGGCATAACAAACAACAATATAACAGGAACAATACCTGAATCAATAGGGAACCTCGTCAACTTGGATGAACTTGACATGGAAAACAATCTTCTCATGGGGAGCCTTCCCGCATCTCTCGGCAATCTCAAGAAGTTGAATAGATTGTCTTTGTCAAATAACAATTTTTCAGGATCCATCCCAGTAACTCTTGGCAATCTTACAAAACTTACAATCCTTTTGCTTAGTACCAATGCACTGAGTGGAGCTATACCTTCTACTCTCAGCAATTGTCCTTTAGAAATGGTGGACCTTTCTTACAACAACCTTTCCGGCCCGATACCGAAGGAACTTTTTCTTATCTCCACAATATCAAGTTTCCTGTATCTTGCGCACAATAAATTAACTGGGAATTTGCCTTCAGAAGTGGGAAATCTCAAGAATCTTGATGAACTCGACCTCTCTGATAATACGATTTCAGGAAAGATCCCTACCACCATTGGAGAATGCCAGAGCTTACAGTATCTCAATTTATCTAGGAACTTCATCGAGGACACAATTCCTCCGTCACTGGAACAATTAAGGGGGCTCCTAGTACTTGATCTTTCTCAAAATAATTTGTCTGGAACAATCCCTAGATTCCTAGGTAGCATGACAGGTCTTTCTACTCTGAATCTTTCAAGCAATGATTTCGAAGGTGAAGTTCCAAAATATGGAATATTTCTTAATGCAACTGCAACCTCTGTCATGGGAAACAATGACTTGTGTGGTGGGGCGCCTCAACTGAAGTTGCCAAAATGCTCAAATCAAACTAAACATGGGCTGTCTTCAAAGATCATCATAATTATCATTGCAGGAAGCACAATTTTGTTTCTCATTCTATTCACATGCTTTGCGCTACGTCTAAGGACTAAGCTTAGAAGAGCAAACCCAAAGATACCGCTCTCCGATAAGCAACATATGAGAGTTTCTTATGCTCAGTTGTCCAAAGCAACAAATAGTTTTGCATCTGAGAACCTCATTGGAGTGGGCAGCTTTGGTGCAGTGTACCAAGGAAGAATTGGGATCTCTGACCAACAATTGGTGGTTGCAGTGAAGGTGCTCAACTTGCAACAAGCTGGTGCGTATCGAAGTTTTGATGCAGAATGTGAGGCTTTGAGATGTATTCGCCATCGGAATCTTGTAAAGATTCTTACAGTTTGCTCAGGTATTGATTTCCAAGGTAGTGACTTCAAGGCGCTTGTATTTGAGTTCCTGCCAAATGGAAATTTAGACCAGTGGCTACACAAGCATCTTGAGGAAGAAGGTGAACCTAAGGTGCTAAATCTCGTTGAAAGACTCCAAATTGCGATAGATGTGGCTTCTGCACTTGAATACTTACATCAGCACAAGCCATGTCCAATTGTTCACTGTGATCTGAAGCCAAGCAATATTCTTCTTGACAATGACATGGTTGCTCATGTTGGTGATTTTGGGCTTGCAAGGTTCCTTCATCAAGAACACAGCAATAGTTCAGATAAATCAACTGGTTGGAATGCAATAAGAGGAACAATTGGCTATGTTGCCCCAGAGTATGGATTGGGCAATGAAGTCTCAATCCATGGAGACGTCTACAGCTATGGCATACTTTTGCTGGAGATGTTCACTGGAAAAAGGCCAACAAACAGTGAATTCGGCGATGTTCTTACTCTTCATGAGTATGTAGAAACAGCGCTGCCAGACCAAACAACTAGTGTCATTGACCAAAGCCTACTAGATGCGACATGGAATAGCGAAGGAACAGCTCAAAAGTACCACGACATCGAAGAGATAAGAACTGAGTGCATTGTTTCAATTCTGAAGGTCGGAATATTGTGCTCAAAAGAGATACCAACTGATCGGATGCAAATTGGGGATGCATTGAGAGAGTTGCAGGCAATTAGAGATAGGTTTGATACACATCAGCTATAG
More
|
|||||||
| Protein seq | MLSVVNFDGNQLEATNDADWGFMTSLTNCSNMILIDVSINKLQGVLPKAIGNMSTQLEYFGITNNNITGTIPESIGNLVNLDELDMENNLLMGSLPASLGNLKKLNRLSLSNNNFSGSIPVTLGNLTKLTILLLSTNALSGAIPSTLSNCPLEMVDLSYNNLSGPIPKELFLISTISSFLYLAHNKLTGNLPSEVGNLKNLDELDLSDNTISGKIPTTIGECQSLQYLNLSRNFIEDTIPPSLEQLRGLLVLDLSQNNLSGTIPRFLGSMTGLSTLNLSSNDFEGEVPKYGIFLNATATSVMGNNDLCGGAPQLKLPKCSNQTKHGLSSKIIIIIIAGSTILFLILFTCFALRLRTKLRRANPKIPLSDKQHMRVSYAQLSKATNSFASENLIGVGSFGAVYQGRIGISDQQLVVAVKVLNLQQAGAYRSFDAECEALRCIRHRNLVKILTVCSGIDFQGSDFKALVFEFLPNGNLDQWLHKHLEEEGEPKVLNLVERLQIAIDVASALEYLHQHKPCPIVHCDLKPSNILLDNDMVAHVGDFGLARFLHQEHSNSSDKSTGWNAIRGTIGYVAPEYGLGNEVSIHGDVYSYGILLLEMFTGKRPTNSEFGDVLTLHEYVETALPDQTTSVIDQSLLDATWNSEGTAQKYHDIEEIRTECIVSILKVGILCSKEIPTDRMQIGDALRELQAIRDRFDTHQL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.210678 | 0.347639 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0215900 | RBH | 0.0 | 0.247162 | 0.883589 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0215900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004120 | SBH | 0.124114 | 14.442955 | 1.259517 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0008960 | RBH | 0.000000 | 0.0 | 0.208188 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0008750 | RBH | 0.0 | 0.000000 | 0.672218 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0008630 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0008760 | RBH | 0.130144 | 0.000000 | 1.292085 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0108900 | RBH | 0.7293755 | 2.231795 | 3.2296055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0008590 | RBH | 0.047226 | 0.052366 | 0.060355 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0112700 | RBH | 0.448294 | 2.9449195 | 5.3632495 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0009010 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0008690 | RBH | 0.029775 | 0.493149 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0008990 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0008970 | RBH | 0.120356 | 0.097424 | 0.112737 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0008740 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G008870 | RBH | 0.054619 | 0.838713 | 1.551434 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0008770 | RBH | 0.0 | 0.000000 | 0.686564 |
