Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
LOC_Os02g03640 OGI:02005490 | 3/16 Nipponbare | IRGSP 1.0 | MSU Chr02:1507314-1511605
Gene Symbol -
DNA seq

ATGAGGAATATTTGTCAGAGGAACAGACTGAAGAAGAAAATACCCTTCCACAGCTTGCCACACCATCTGAACAAAAAACTGTATGTGATGATTCTGGAGAAGGCAATGAAGACACTGATGACGATTTTGATATCAATGATGGAGAAGGCAATGAAGACACTAATGACGATGTTGATATTGATGATGAAGGCAATGAAGATACTGATGTTGATATTAATGTTCGAGGCAACTGCTAAGTTTAATAGTCCTAATGGTAAGAAATAATGACATTATTACTCGTATCCCTGATTACTAAGGATCACTTTTGTCTTCGCAATTTAACACCGAACAGTTGAAAATGGAGCACCTGAAACACGTGGCAAGACAAAACTGAAAGATGTTTGGAACCTTCCGAAAGGGCTTAGAATTGTGGTACAATGCAATGATCTCAATCAGGCGGTAGGGGAAGAAGCTGGAGTTTTGGGTAAATTTCTTGGAATGATAGCTAGGAATGGTAGTCTGTGTAGCTTAGGCTACACAGACTGGAGATATGTAATAGGAAAGAGAGAGAAAAATACAAATGAACTAAAAGTTAAAAAGGACATACTTAAGCAAGTAAAGGTAATTCCTTTTCAGATCAACATTTTTGCTAACTTCTTGTATTATGTTATGCATATCCCCATATGGCCATATGAGTTTCTGTGTTGCTATATGTAGATGAGATTCCTTTATGCTCCTCGGATGGAAGAGTTCATATTAAAAAAAATTGGAGAAAGATGGCGGCAATATAAAGCAAAACTAAAAGATTTGTATTTTGATGTGAATGAGACTAAGGAAGCTAATTGCAACAATGTCCCAGAAGGTGTGCTTTCTGACCAGTGGATTGCTCTTGTCAATCATTGGATGAACGAGAAATCGAAGGTACATATACCATATTCATTTCTGTAATGGTCTTACAAATTAGAACTCTGTACTAAACAAAACAATGCAATATTCTTTTTTGATTGCTAACTCTACGAGACCATAACAGAGAATAAGTGAGCAGAATAAGAAAAACTGCCAAAAGAAGAAGGCAATTCACACAGCAGGGACAAAGAGTTTTGCTCGCACAAGAGAAGAGATGGTAAAACATGTCTTGAATAGTATTCATCTATTTCCATTTCAAGCATGTATAGCTACTATTAGGACTTTACTGATTTGGTCATGTGTTCCATAGAGACAAAAAGATCCTGCAAAGAAGTACCCACATAGAGCTGTTGTTTATGTCCACACACACAAGCGCAAAAGTGACAAGAATATAAATGGGCATGTGGTATACTATTAACACTCAACCATAGATATTTTTCAGTTATTCTCATATGTTGTTTTATTCGTATTAATTTTTCATATGTTTAGGATAATTTGAAGAGACTTATAGCTGAACAACCAGCTTTAGCGGATGCTAGTAAAGGAAAGACTGCTTGGAAAGGAGATGCATTGAACCAAATACTAGGAGATGACAAGCCTGGGCGTGTGCATGGTCTTGGACTAGTTCCAAAGCCTAAACAAGTGCTTGATGTGCCAACTTCCCGACGTTTGCAGAATATAAATCTTACTACAGTGGAGGATAACTCCAGTGAAGATGTAATGGCTATTAGACTGCAGATGGAAAAGTTAGAACGCCATGTTGAGAATAATGATGCTGAACTTTTACAATTAAAAGAGAAGGCAACCAAGTTGGAAAAGGCACAAAAGAATCAGGTGAATTTAAGGGAGTTGAGTCTTAAAAAAATTATATGAACTTGTGTGTGACCCAATGAATGCATCTAACTTACCTAATTGAAGTTACAGGGAGGTTTAGATGGAGCATCTACAAATAAAAAAGCTATTTGTGATGACGTACCTAATTCAAAAAGGAGGGTATGTATCTTTATGGAAGAAATATCATAACATTTTCTGCATTATCTCATAAACTGTGGTATAGATCTCTGTTCATTTTCTGTTATGGACAGAGAGTGTATGGTGACAACCCCTCGCAAGAAATTTGTATGTTTGAGGAGGGAAACATTATGGATCAGCAGGACAACAGTTTGATGGTAATGTGATATAGCACCATCTTATAACTGGGAATAGCTGTGTTTTTTTACTTGGGAATAGCATTTATTTTCTCTCTTTTACAATAGAATACACAAAGCCATGTGCACGATGAGAATTTGCAACCACCAACCAAGCATTCTACTGTTTACAAGGTCCTTGCCTTTGCATTTAAAATATTATTATATATATATTCACTATTATTTACATAGCATTCATTATAATCATATGCCTTCTTTTACTCTAGAATACACAGTCTTTGGGCCAGAATCACAGTGGGAAGCAAAGGAAGATTACTTCCTGTGCAAACATAAACAAATAATTGGAACATTATAGTTTGTGCCAATTTTATGACCTATTCCATTGCAGCGCAAAGGAAATTTGGACCAGAATGAGCTTATGCAACCAGGGAAGAGTATTTCTAGTGCATACAAGGTGAGTTGATTAAGTTCTCTCTTTATCCTTTCAAACTCAATGCCATAGTCAATAAGTGTTTGAAAGTAGTTTAATTTCGATATATAAATGTATATATAGATTTGTAAAATTTATTTGTTACCTTCCACTGTAGAACAATAAACCTGACAACCAGGACAACTATATGGTGAATGCACACAAAGTTACAAGTACACACAAGGTTATTTTTTCATCACTTTAAGTCACCATGTCTACAGATATAAGCTCTTTGAAACTATAACACACATGATTTACTAGTTATAATAATTGTATTGCAGAACAAAGAGAACCTTACCCGCAAGCTTGTTAGACCAAGCCTAAACAAGTATAGTACTGCTTCTAAGGTTAGTCTAATTGTTTCAAGTTCAAAATGCTATTTCTGTTTATTGAACACTACACAACAACTAAAATAGCACACACAGCATGTTGGTTTTTACTGTAAATTCTCTCTATTTTTTCAGAAACGGCAATGCAACACAATGGACTTTTTAACTGACAATTCAACAGTGGTAAACCTTGCTAACATTTTAGTCTAAATAGTTTAATAAAATCTGGTCTTAATGTCCTTTTATTTTCCACTGTGATAGAAAGTGTATGGTGACGGTCCCTTGCAAGAAATTTGTCATGTTGAACAGGAAAACATTGTGATGGTAATATACATAAATTTCATTGTTTTATACATGGGAATAGTTGCACTATTTTGTAACTGGGAATATATGCTCTCTTTGACAACAGAATTCACAAAGCCATGCTCAAGATGAGGATAAGACACCACCAACCAAGCATGCTACTGCACACAAGGTCCTTGTCTTTCAATTTATATTTTTATTCTGAACTCACCATGGTTGCATCCTATTATATGGTTATCATGGATACATAGCATTATATTATTTGGTATTGTTTGTAACTAACTATGAATGTTTACTATAGTTCATGACAATGTGATGTATTCTTTTATTCTAGAACAAACGAACCTTTGGCCTAAATGACCATGGGAAACAGATGGAGATTATTTGTGCCAAGGTTAGTTTTCACTTCTTATTGAGTTCAAAAATTATTTGATAGAAAAGTTTGAAAGTAAAATTTCTTAATATATATAATTTTAGCACTAATTTGTTGCCCTCCCCTATAGAACAAGAAACCTGACAATCAGGACAGCCATATGGTACATGCACATAAAGTTGGTGGTGCATACAAGGTTGTTTTTTTATTCACCATGTTTACAAATATCAGTCCATTCAAACTATAACATGCATGATTCACTAGTATTATGATTGAATTGGAGAACAATAATTAGCTCTGTTTGGTCTTTCTTTCTTTCTATCTTGTGGTTAAATTGCAAACCATGATCCAATTTTTTTTATAGGAACAACAGTGCAGCAAAATGGACTTTATCACTGACAATTCAATGGAGGTATTTTACTGTGAAATTATTTATGATACTTGAATTTCTTAAAGTATATTGATAATATTGATGGATGTATTATGCACTTCAGGTTGGAACTAAAGTATTCTTAAAAAGTTGGAAAAATCGGAATACAAACGTGGCTCTTGCCACTATTGTAAGCTGTGATCCAACACGCAGAGTTGGAGGTGTTGAGCTAGGAAATGAATTTTTAATGGTTCATGTCGATCTTGCATTGGCAAAATCCGAAGATTTGATTAGGCCATACAAAGGCTACAAAATTGTTGGTCATGTTGTAGGACTTGAAATTGCGTGGCCTGCAATTTTTATATGTTCCTATCTCTTACTTCTTACTTCGGAGATGTGCTTTTCGTCTTCATAA

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CDS seq

ATGAGGAATATTTGTCAGAGGAACAGACTGAAGAAGAAAATACCCTTCCACAGCTTGCCACACCATCTGAACAAAAAACTGTATGTGATGATTCTGGAGAAGGCAATGAAGACACTGATGACGATTTTGATATCAATGATGGAGAAGGCAATGAAGACACTAATGACGATGTTGATATTGATGATGAAGGCAATGAAGATACTGATGTTGATATTAATGTTCGAGGCAACTGCTAAGTTTAATAGTCCTAATGTTGAAAATGGAGCACCTGAAACACGTGGCAAGACAAAACTGAAAGATGTTTGGAACCTTCCGAAAGGGCTTAGAATTGTGGTACAATGCAATGATCTCAATCAGGCGGTAGGGGAAGAAGCTGGAGTTTTGGGTAAATTTCTTGGAATGATAGCTAGGAATGGTAGTCTGTGTAGCTTAGGCTACACAGACTGGAGATATGTAATAGGAAAGAGAGAGAAAAATACAAATGAACTAAAAGTTAAAAAGGACATACTTAAGCAAGTAAAGATGAGATTCCTTTATGCTCCTCGGATGGAAGAGTTCATATTAAAAAAAATTGGAGAAAGATGGCGGCAATATAAAGCAAAACTAAAAGATTTGTATTTTGATGTGAATGAGACTAAGGAAGCTAATTGCAACAATGTCCCAGAAGGTGTGCTTTCTGACCAGTGGATTGCTCTTGTCAATCATTGGATGAACGAGAAATCGAAGAGAATAAGTGAGCAGAATAAGAAAAACTGCCAAAAGAAGAAGGCAATTCACACAGCAGGGACAAAGAGTTTTGCTCGCACAAGAGAAGAGATGAGACAAAAAGATCCTGCAAAGAAGTACCCACATAGAGCTGTTGTTTATGTCCACACACACAAGCGCAAAAGTGACAAGAATATAAATGGGCATGTGGATAATTTGAAGAGACTTATAGCTGAACAACCAGCTTTAGCGGATGCTAGTAAAGGAAAGACTGCTTGGAAAGGAGATGCATTGAACCAAATACTAGGAGATGACAAGCCTGGGCGTGTGCATGGTCTTGGACTAGTTCCAAAGCCTAAACAAGTGCTTGATGTGCCAACTTCCCGACGTTTGCAGAATATAAATCTTACTACAGTGGAGGATAACTCCAGTGAAGATGTAATGGCTATTAGACTGCAGATGGAAAAGTTAGAACGCCATGTTGAGAATAATGATGCTGAACTTTTACAATTAAAAGAGAAGGCAACCAAGTTGGAAAAGGCACAAAAGAATCAGGGAGGTTTAGATGGAGCATCTACAAATAAAAAAGCTATTTGTGATGACGTACCTAATTCAAAAAGGAGGAGAGTGTATGGTGACAACCCCTCGCAAGAAATTTGTATGTTTGAGGAGGGAAACATTATGGATCAGCAGGACAACAGTTTGATGAATACACAAAGCCATGTGCACGATGAGAATTTGCAACCACCAACCAAGCATTCTACTGTTTACAAGCGCAAAGGAAATTTGGACCAGAATGAGCTTATGCAACCAGGGAAGAGTATTTCTAGTGCATACAAGAACAATAAACCTGACAACCAGGACAACTATATGGTGAATGCACACAAAGTTACAAGTACACACAAGAACAAAGAGAACCTTACCCGCAAGCTTGTTAGACCAAGCCTAAACAAGTATAGTACTGCTTCTAAGAAACGGCAATGCAACACAATGGACTTTTTAACTGACAATTCAACAGTGAAAGTGTATGGTGACGGTCCCTTGCAAGAAATTTGTCATGTTGAACAGGAAAACATTGTGATGAATTCACAAAGCCATGCTCAAGATGAGGATAAGACACCACCAACCAAGCATGCTACTGCACACAAGAACAAACGAACCTTTGGCCTAAATGACCATGGGAAACAGATGGAGATTATTTGTGCCAAGGAACAACAGTGCAGCAAAATGGACTTTATCACTGACAATTCAATGGAGGTTGGAACTAAAGTATTCTTAAAAAGTTGGAAAAATCGGAATACAAACGTGGCTCTTGCCACTATTGTAAGCTGTGATCCAACACGCAGAGTTGGAGGTGTTGAGCTAGGAAATGAATTTTTAATGGTTCATGTCGATCTTGCATTGGCAAAATCCGAAGATTTGATTAGGCCATACAAAGGCTACAAAATTGTTGGTCATGTTGTAGGACTTGAAATTGCGTGGCCTGCAATTTTTATATGTTCCTATCTCTTACTTCTTACTTCGGAGATGTGCTTTTCGTCTTCATAA

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Protein seq

MRNICQRNRLKKKIPFHSLPHHLNKKLYVMILEKAMKTLMTILISMMEKAMKTLMTMLILMMKAMKILMLILMFEATAKFNSPNVENGAPETRGKTKLKDVWNLPKGLRIVVQCNDLNQAVGEEAGVLGKFLGMIARNGSLCSLGYTDWRYVIGKREKNTNELKVKKDILKQVKMRFLYAPRMEEFILKKIGERWRQYKAKLKDLYFDVNETKEANCNNVPEGVLSDQWIALVNHWMNEKSKRISEQNKKNCQKKKAIHTAGTKSFARTREEMRQKDPAKKYPHRAVVYVHTHKRKSDKNINGHVDNLKRLIAEQPALADASKGKTAWKGDALNQILGDDKPGRVHGLGLVPKPKQVLDVPTSRRLQNINLTTVEDNSSEDVMAIRLQMEKLERHVENNDAELLQLKEKATKLEKAQKNQGGLDGASTNKKAICDDVPNSKRRRVYGDNPSQEICMFEEGNIMDQQDNSLMNTQSHVHDENLQPPTKHSTVYKRKGNLDQNELMQPGKSISSAYKNNKPDNQDNYMVNAHKVTSTHKNKENLTRKLVRPSLNKYSTASKKRQCNTMDFLTDNSTVKVYGDGPLQEICHVEQENIVMNSQSHAQDEDKTPPTKHATAHKNKRTFGLNDHGKQMEIICAKEQQCSKMDFITDNSMEVGTKVFLKSWKNRNTNVALATIVSCDPTRRVGGVELGNEFLMVHVDLALAKSEDLIRPYKGYKIVGHVVGLEIAWPAIFICSYLLLLTSEMCFSSS

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
LOC_Os02g03640 LOC_Os02g03640.1 Chr02 1507314 1511605 + MSU_osa1r7
CDS seq

ATGAGGAATATTTGTCAGAGGAACAGACTGAAGAAGAAAATACCCTTCCACAGCTTGCCACACCATCTGAACAAAAAACTGTATGTGATGATTCTGGAGAAGGCAATGAAGACACTGATGACGATTTTGATATCAATGATGGAGAAGGCAATGAAGACACTAATGACGATGTTGATATTGATGATGAAGGCAATGAAGATACTGATGTTGATATTAATGTTCGAGGCAACTGCTAAGTTTAATAGTCCTAATGTTGAAAATGGAGCACCTGAAACACGTGGCAAGACAAAACTGAAAGATGTTTGGAACCTTCCGAAAGGGCTTAGAATTGTGGTACAATGCAATGATCTCAATCAGGCGGTAGGGGAAGAAGCTGGAGTTTTGGGTAAATTTCTTGGAATGATAGCTAGGAATGGTAGTCTGTGTAGCTTAGGCTACACAGACTGGAGATATGTAATAGGAAAGAGAGAGAAAAATACAAATGAACTAAAAGTTAAAAAGGACATACTTAAGCAAGTAAAGATGAGATTCCTTTATGCTCCTCGGATGGAAGAGTTCATATTAAAAAAAATTGGAGAAAGATGGCGGCAATATAAAGCAAAACTAAAAGATTTGTATTTTGATGTGAATGAGACTAAGGAAGCTAATTGCAACAATGTCCCAGAAGGTGTGCTTTCTGACCAGTGGATTGCTCTTGTCAATCATTGGATGAACGAGAAATCGAAGAGAATAAGTGAGCAGAATAAGAAAAACTGCCAAAAGAAGAAGGCAATTCACACAGCAGGGACAAAGAGTTTTGCTCGCACAAGAGAAGAGATGAGACAAAAAGATCCTGCAAAGAAGTACCCACATAGAGCTGTTGTTTATGTCCACACACACAAGCGCAAAAGTGACAAGAATATAAATGGGCATGTGGATAATTTGAAGAGACTTATAGCTGAACAACCAGCTTTAGCGGATGCTAGTAAAGGAAAGACTGCTTGGAAAGGAGATGCATTGAACCAAATACTAGGAGATGACAAGCCTGGGCGTGTGCATGGTCTTGGACTAGTTCCAAAGCCTAAACAAGTGCTTGATGTGCCAACTTCCCGACGTTTGCAGAATATAAATCTTACTACAGTGGAGGATAACTCCAGTGAAGATGTAATGGCTATTAGACTGCAGATGGAAAAGTTAGAACGCCATGTTGAGAATAATGATGCTGAACTTTTACAATTAAAAGAGAAGGCAACCAAGTTGGAAAAGGCACAAAAGAATCAGGGAGGTTTAGATGGAGCATCTACAAATAAAAAAGCTATTTGTGATGACGTACCTAATTCAAAAAGGAGGAGAGTGTATGGTGACAACCCCTCGCAAGAAATTTGTATGTTTGAGGAGGGAAACATTATGGATCAGCAGGACAACAGTTTGATGAATACACAAAGCCATGTGCACGATGAGAATTTGCAACCACCAACCAAGCATTCTACTGTTTACAAGCGCAAAGGAAATTTGGACCAGAATGAGCTTATGCAACCAGGGAAGAGTATTTCTAGTGCATACAAGAACAATAAACCTGACAACCAGGACAACTATATGGTGAATGCACACAAAGTTACAAGTACACACAAGAACAAAGAGAACCTTACCCGCAAGCTTGTTAGACCAAGCCTAAACAAGTATAGTACTGCTTCTAAGAAACGGCAATGCAACACAATGGACTTTTTAACTGACAATTCAACAGTGAAAGTGTATGGTGACGGTCCCTTGCAAGAAATTTGTCATGTTGAACAGGAAAACATTGTGATGAATTCACAAAGCCATGCTCAAGATGAGGATAAGACACCACCAACCAAGCATGCTACTGCACACAAGAACAAACGAACCTTTGGCCTAAATGACCATGGGAAACAGATGGAGATTATTTGTGCCAAGGAACAACAGTGCAGCAAAATGGACTTTATCACTGACAATTCAATGGAGGTTGGAACTAAAGTATTCTTAAAAAGTTGGAAAAATCGGAATACAAACGTGGCTCTTGCCACTATTGTAAGCTGTGATCCAACACGCAGAGTTGGAGGTGTTGAGCTAGGAAATGAATTTTTAATGGTTCATGTCGATCTTGCATTGGCAAAATCCGAAGATTTGATTAGGCCATACAAAGGCTACAAAATTGTTGGTCATGTTGTAGGACTTGAAATTGCGTGGCCTGCAATTTTTATATGTTCCTATCTCTTACTTCTTACTTCGGAGATGTGCTTTTCGTCTTCATAA

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Protein seq

MRNICQRNRLKKKIPFHSLPHHLNKKLYVMILEKAMKTLMTILISMMEKAMKTLMTMLILMMKAMKILMLILMFEATAKFNSPNVENGAPETRGKTKLKDVWNLPKGLRIVVQCNDLNQAVGEEAGVLGKFLGMIARNGSLCSLGYTDWRYVIGKREKNTNELKVKKDILKQVKMRFLYAPRMEEFILKKIGERWRQYKAKLKDLYFDVNETKEANCNNVPEGVLSDQWIALVNHWMNEKSKRISEQNKKNCQKKKAIHTAGTKSFARTREEMRQKDPAKKYPHRAVVYVHTHKRKSDKNINGHVDNLKRLIAEQPALADASKGKTAWKGDALNQILGDDKPGRVHGLGLVPKPKQVLDVPTSRRLQNINLTTVEDNSSEDVMAIRLQMEKLERHVENNDAELLQLKEKATKLEKAQKNQGGLDGASTNKKAICDDVPNSKRRRVYGDNPSQEICMFEEGNIMDQQDNSLMNTQSHVHDENLQPPTKHSTVYKRKGNLDQNELMQPGKSISSAYKNNKPDNQDNYMVNAHKVTSTHKNKENLTRKLVRPSLNKYSTASKKRQCNTMDFLTDNSTVKVYGDGPLQEICHVEQENIVMNSQSHAQDEDKTPPTKHATAHKNKRTFGLNDHGKQMEIICAKEQQCSKMDFITDNSMEVGTKVFLKSWKNRNTNVALATIVSCDPTRRVGGVELGNEFLMVHVDLALAKSEDLIRPYKGYKIVGHVVGLEIAWPAIFICSYLLLLTSEMCFSSS

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.000000

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_02g0129000 RBH 0.0 0.0 0.000000
Nipponbare | IRGSP 1.0 | MSU LOC_Os07g11150 SBH 0.0 0.000000 0.000000
Nipponbare | IRGSP 1.0 | RAP-db Os02g0129000 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_02g0009420 SBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_02g0009510 SBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_02g0009370 SBH 0.0 0.0 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) NA NA NA NA NA
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_02g0009330 SBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_02G0026300 RBH 6.0598055 25.598183 26.154227
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_02g0009140 SBH 0.0 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_02G0026500 RBH 0.0148565 0.974824 0.164154
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_02g0009590 SBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_05g0012230 SBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_09g0004930 SBH 11.888258 31.335684 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_07G022630 SBH 0.512635 4.929079 6.489412
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_07g0022680 SBH 0.0 0.0 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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