Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g57958 | OGI:03070620 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:33504237-33504874 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTTTTTGGGGGGGTTATATTTCTAACCGAAGAAATTGACTTCGTATGGGCATTTTGCTGGCAGCTATGGAAATAGCTACTCTAGCTACAGTTTCGGATACTCCGCCCATTTCATAAAGTATTCGACCTGGTTTAACAACGGCTACCCAATATTCGGGGGATCCCTTTCCCGAACCCATACGTGTTTCGGTCGGTCTTATTGTAACCGGTTTGTCGGGAAATATACGTACCCAGATTTTTCCACCACGACGTGCATATCGTGTCATTGCTCTTCGTCCTGCTTCTATCTGCCTCGCCGTAATCCAAGTGGGTTCAAGTGCTTGAAGAGCATATCTACCAAAACAAATACAATTGCCTCGGTAGGATTTTCCCTTCATTCTTCCTCTATGTTGTTTACGAAATCTGGTTCTTTTGGGGTTATAGTCGATGGTTCTCTCTTAGTTCCATCTCTACTGCAAAACTGGACATGAGAGTTTCTTCTCATCCAGCTCCTCGCGAATCAAATGAGAAAGTGTGCAAATTTCTCTAATTCCACAATATTCTAAAATATTACGGATAGATACACATTAATAGGAAAGGTTAGGGTTTTTAATATTGAATTTATTAAAATACTAAAATATATAGTCAAGAAAGAGGATC
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| CDS seq | ATGAAGGGAAAATCCTACCGAGGCAATTGTATTTGTTTTGGTAGATATGCTCTTCAAGCACTTGAACCCACTTGGATTACGGCGAGGCAGATAGAAGCAGGACGAAGAGCAATGACACGATATGCACGTCGTGGTGGAAAAATCTGGGTACGTATATTTCCCGACAAACCGGTTACAATAAGACCGACCGAAACACGTATGGGTTCGGGAAAGGGATCCCCCGAATATTGGGTAGCCGTTGTTAAACCAGGTCGAATACTTTATGAAATGGGCGGAGTATCCGAAACTGTAGCTAGAGTAGCTATTTCCATAGCTGCCAGCAAAATGCCCATACGAAGTCAATTTCTTCGGTTAGAAATATAA |
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| Protein seq | MKGKSYRGNCICFGRYALQALEPTWITARQIEAGRRAMTRYARRGGKIWVRIFPDKPVTIRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVSETVARVAISIAASKMPIRSQFLRLEI |
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| Function | 50S ribosomal protein L16, chloroplastic [UniProtKB/Swiss-Prot:P0C442] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g57958 | LOC_Os01g57958.1 | Chr01 | 33504237 | 33504874 | - | MSU_osa1r7 | ||
| CDS seq | ATGAAGGGAAAATCCTACCGAGGCAATTGTATTTGTTTTGGTAGATATGCTCTTCAAGCACTTGAACCCACTTGGATTACGGCGAGGCAGATAGAAGCAGGACGAAGAGCAATGACACGATATGCACGTCGTGGTGGAAAAATCTGGGTACGTATATTTCCCGACAAACCGGTTACAATAAGACCGACCGAAACACGTATGGGTTCGGGAAAGGGATCCCCCGAATATTGGGTAGCCGTTGTTAAACCAGGTCGAATACTTTATGAAATGGGCGGAGTATCCGAAACTGTAGCTAGAGTAGCTATTTCCATAGCTGCCAGCAAAATGCCCATACGAAGTCAATTTCTTCGGTTAGAAATATAA
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| Protein seq | MKGKSYRGNCICFGRYALQALEPTWITARQIEAGRRAMTRYARRGGKIWVRIFPDKPVTIRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVSETVARVAISIAASKMPIRSQFLRLEI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 13.132854 | 11.832225 | 5.414974 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0269100 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g16826 | SBH | 10.665731 | 6.948205 | 6.113594 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0269100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0036370 | RBH | 5.125414 | 17.839218 | 52.512280 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0035890 | RBH | 13.145954 | 26.207108 | 47.520508 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0036260 | RBH | 11.192279 | 18.540056 | 58.990185 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0035650 | RBH | 13.238655 | 1.021801 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0007750 | SBH | 414.002625 | 192.582275 | 1194.498901 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0454400 | SBH | 91.2320745 | 40.4014455 | 20.6135725 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0007470 | SBH | 37.755905 | 5.577140 | 41.794212 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0550200 | RBH | 467.010437 | 113.2591095 | 105.99263 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0004620 | SBH | 26.624899 | 2.423838 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0007440 | SBH | 27.437029 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0007360 | SBH | 80.257927 | 110.143013 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0019860 | SBH | 26.748146 | 0.0 | 28.370596 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0007430 | SBH | 13.668886 | 9.578989 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G026050 | SBH | 51.216404 | 33.987991 | 104.823463 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0025810 | SBH | 54.282810 | 284.303741 | 253.209412 |
