Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g40840 | OGI:01071670 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:23090754-23095383 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGGTTTCTCTCTCTCTCTCTCTCTCCTCTCTCTCTCTCTCCTCTCTCTCCAATCGAATCGGAATCCATGGAGTCGTCGCGGTCGCGGAAGCGGGCCCGCCAGGACTGGGACGGCGCCGGCGCGCCGCCGCCGCCGGCGGAGCGGGCGGTGGTACGTCCGTCCGTTCATCCCTCTGTCTGCTTTGCTCGATGGGGGTGGTCGGGTTCCTAGGGTTCATGGGGGCTCCTGTGCTGACGTTGTGGTGCTTGCAGGTGGCGAGGGGCGGCGCGTCGCCGCCGTGGAGGGACGACGACCGCGACGGGCACTACGTGTTCGACCTCGGCGAGAACTTGAACCGACGATGTGAGCGCCACCCCGTTCCTGTCTCTTGGTTGGCTGAAAGGAGATTTGTGTGTTCTTAGATCCTGCCTGCTTGGAAACTGCAGTAGTTTTGTTCAGTTTTATGTGGTGCTGTAGAATTCTACTGCGAAAGTTCATTGCAATAATCGCATGAGTGATTTGGACATTGATTACCTAGTGTAATACAGTATAATATTGTATCTGTGTTCTAAAACCAAGGGAGGTGAATGAAACAAGGTTCCCGTTTGGATTAGCAACTTTCTGTTATGTTAATAAACTATATATGCCCTTGTTCCTTGCTTTTGTTCCCAGCATTTATTGATGCTAATTTTAGTTGAAATTGCAATAACCGTAGGGCTTTATAGCTATTTAGGTTCTGTGAGATTGTTCGTTGATATTCTTCTCTTCTTGGCTATGCAGACAAAATCTTGAGCAAAATGGGAGAAGGTTGGATTTTCTGCAATCTGTTCCCTAGTACCTGGTGTCTTTGCTATTATTGTAATGTAAAGCAACAGGAATCATTTTAAATTTTTAATAGGTACTTTTGGGCGTGTTTTGGAATGCTGGGACCGTGAAACACATGAATATGTCGCAATAAAAGTTGTTCGTAGCATCCGCAAGTACAGGGATGCTGCAATGATTGAGATCGATGTGCTCAACCGCCTTGCAGAAAATGAGAGATACAGATCACTGTGAGTACCTCAAAATATTTGATCCCAAAAATCTTAGTCTTTTCTGTTTCTCTCCTGATCAGTCTTCCTTACTGGCCAGCTGTGTCCAGATTCAAGGATGGTTTGACTATCGCAATCATATATGCATTGTAAGTCTCAATTTCATTCATTTATGCTAGTTCTAAAAATCTATACCAAATGTCAGTTGTTGATATGCGCATTTACAGTTCCAATATTCCATATTCCACTTTTCCCTGTTAGTTCAAAGTTTTGTTTGTTGGCAATTTACTTTGCTGGCCCTCCGAATATTCACCTTTTTGCTCGTAGGCAGTGAAACATGCTGCTATGTACGATATGGTAATGTGCTTGAATAGGATTTCCATGCTTATAAAACAGTTGTCGTTCTTTGCTCATAAAGGTTTGCCGATATGGAAACAAATCAAAGATAATTTTTCTTCAATGGATATCGATGGTTTTGTCAGGTTTTTGAGAAGCTTGGGCCAAGCTTGTATGATTTTCTAAAGAGAAATAGATACCAACCTTTCCCTGTGGAACTTGTGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCATGTGTGTGATTGTTTGATTCTGCATATCAATTCTTAACAAATTCGGTAGCTGCTGATTCATTCTTCTGTTGCTGAAAAGGAGCATGCTTGACCATCTTTTCCTTTCTTTCTTCTAAAATAGATATGCATGAATTACGCCTTATTCACACTGATCTGAAGCCAGAAAACATACTCCTTGTGTCTTCGGAGTATATAAGGGTTCCAGGTTCCAAGGTAATGTCAATCAGTTTTGTAGTGATCATCTGCTATTCTGAAACTAGGCATGCGGTATTAGCAGTTATGTTGAATGATCCCTTGGGGTTGTACAGAAGAATTCACAAGATGAGATGCATTTCAAGTGCTTACCAAAGTCCAGTGCCATAAAGCTGATAGATTTTGGTAGTACCGCCTTTGATAATCAGGAACATAGCTCGATTGTTTCTACAAGGCATTACAGAGCACCTGAAATAATCTTAGGTAAATTGGTTATCTTTTAAGGTTTGCTTTTATTTTATCTTGCTTGAGTTTGGAATATCCTTGTGATGAAGGTTAATGTGGCCTCGAGTATGCTCCAATGGAGCACAACAAAGGTGCAATTCAAAATCCTTGGATGCAATAATTGATAATGCTGTTAGAACTCTTATTTTTAGTGATTCGAAATGACAGAACTCATTAAAACAATGAAAACTTCTTGCCATCACTATAATCATGTTAGTATTGGCAGAAGAAATAGCACTTGGTCTACTTATTCGTCATTTTTTTCAGTGTACTATCTGATTATGCTTTATAGTAAAGTGGTAGGCATTTGACTGAGAAGAATGTTTTTATTAACTTGGTATTTTTAGAGATGGAGCATATATTCCTCCCTAGATAATTCTGATATTCTTGAATATGTTCCTATGACAGGCTTAGGGTGGAGTTTCCCTTGTGACCTTTGGAGTGTCGGATGCATCATTGTTGAGCTATGCTCGGTTTGATATCTTGTCATGCATATTTTTCCTTTCTTTTACCTTAGCCTATGTTCCTAACCATAAAAAACCTTTAGGGGGAAGCATTGTTTCAAACACATGAGAACCTTGAGCACTTAGCAATGATGGAGAGGGTTTTGGGTCCACTCCCAGAACACATGATAAGGAAAGCCAGGTACATTGTGGCAGTGTGCACACTACTTTGATGATCATTTTCTTTTACCTTTTTCTGTGTTGTCCTCAATATAGCAAGTAGTAAACGAATCTATGTTTTACTGTTTAATTTGGCATTTGACAAGGAAAATTTTAATTGTATCACTTTTTAAAAATATTTTTTGGGTTTTCCTTTCTATAGAACTTGACTTGTTAGTGGTATGCTATTCTGCCAAGTTGAACCCCTCAATATGTCCGTTTTCTTATACTAGCTTGTAATTTAACAACAGTTTGTTCATGTGTAGACCCAACCTTAAATCCAGGGTTTTTTTTAACAGTTTATAGTTACTCCAACTCACTAATACTCGAGTCTTATATTTCTTTTGATTGATTTATCCATAGTTCTCATATAAAGTAATAATAATAGATGCAACTCATGCGAATGCTGTTTCTGAGTACGTCATGTGGCTGTCATGTTAACTTTGGCTATGGTATGCTACCATTTACTGTCTTGCAATGATCAATCTTCTTCATTTTATACTGATTTTCCATATTTGCATCGTGTATGTCAACTGGAATATGCAGTTCATCAGCTCAGAAATATTTTAGACGAGGAGCGCGTCTAAATTGGCCTGAAGGTGCTGTTTCAAGAGAGAGTATCAGAGCAGTCAAAAAACTAGATCGGCTAAAGGTTTTGGTTCCCTCAATTATGTCTCTTTTTTTTTGCTACGTTTATCCCCAATCTAAATTATATCTCTAAAATTCAAAACAATATTATGCATATTCCTGTTCTTCAGTCTATCTCCTGTCTGCTACAAGTAAAAGAAATACCATGCATAGAAACATACAAATCAAGAGTAGAAGCAGAAGCTGTTTTTTTTTAATGTAACTATGCATCTATAGTTAATGATTTGTCTGAATGAAGGCATATTATGTTTGTAAATGTTTGATATAAAGCTTATTTCAGTTTTGTCAGGGTGCAGATAGAAAAAATAAAGTTCCATTTTCTTTGGTGAACTGGTCCTCTTGTAGTGTAGTATCTGTTTCATTTAGTGATTTACTATGCTGTTTGTGTGGTAAATTCAGAGTATTATTCTGCTGGTTAGTAAAATTATTCCTTCAAATTTCCACTAAGAGGAAATGAGAAAGTATTAGAAACATATTCTGAAATATCTGTTCTGAAGAAGATTCAACTTACACACCTCAAACATTATGGACTGAAACTTCAGGACTTAGTGGCGAGGAAGGCTGATCATTCAAGGGCGGTGCTGGCAGACTTGTTATATGGGCTTTTAAAATTTGAGCCATCAGAGCGTCTTACTGCCCAAGAAGCTCTAGACCATCCATTTTTCAGAAATACAACATGAGTACATGATCATGCTGACTCTACCCCTCCCAATATGTACGTGAAGAACCCAAGCCTGGAGAAAGCAGGCGCAAGGACATTCCCATATAAAGCAGAATGCCTTCAGCTCATCTGTACCATAAATCTTCTGTAAGCTGAGCTATAATGCTTGTGGTGGTGACACGGCATAACTGTTACGTTCACCCGATGTAATGTACAATAGCATTGAATCTAGGGAAGGTTGATGTAGCAGATGGAACTTGTGCATTGTGAGTTGTGTGATACATGAGGAATTGCATTGCGACTCATGTCGCAGTGACACAACAATGACCAAAGCAGGCCATATATGCCCCTTCCAAATGCTTGTATGATGTATCCTTGCTGGGGTGTTCATGTTACTTAAACATCTCTGTATCCTGAAGTTCCGTTGAAAGCCTGACAAAGTACATAGTAGGGTTGGCACTTGGCGCCTGTTTGTCCTGTTTGCAACTTGCCATGACTTCCTGAAAAATGTTGTGCATACACTGTTACAGATTTGAATCTTCAAAATGCAGAGAGCGAGAGGAATTTTGATTCGAC
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| CDS seq | ATGGAGTCGTCGCGGTCGCGGAAGCGGGCCCGCCAGGACTGGGACGGCGCCGGCGCGCCGCCGCCGCCGGCGGAGCGGGCGGTGGTGGCGAGGGGCGGCGCGTCGCCGCCGTGGAGGGACGACGACCGCGACGGGCACTACGTGTTCGACCTCGGCGAGAACTTGAACCGACGATACAAAATCTTGAGCAAAATGGGAGAAGGTACTTTTGGGCGTGTTTTGGAATGCTGGGACCGTGAAACACATGAATATGTCGCAATAAAAGTTGTTCGTAGCATCCGCAAGTACAGGGATGCTGCAATGATTGAGATCGATGTGCTCAACCGCCTTGCAGAAAATGAGAGATACAGATCACTCTGTGTCCAGATTCAAGGATGGTTTGACTATCGCAATCATATATGCATTGTTTTTGAGAAGCTTGGGCCAAGCTTGTATGATTTTCTAAAGAGAAATAGATACCAACCTTTCCCTGTGGAACTTGTGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCATATATGCATGAATTACGCCTTATTCACACTGATCTGAAGCCAGAAAACATACTCCTTGTGTCTTCGGAGTATATAAGGGTTCCAGGTTCCAAGAAGAATTCACAAGATGAGATGCATTTCAAGTGCTTACCAAAGTCCAGTGCCATAAAGCTGATAGATTTTGGTAGTACCGCCTTTGATAATCAGGAACATAGCTCGATTGTTTCTACAAGGCATTACAGAGCACCTGAAATAATCTTAGGCTTAGGGTGGAGTTTCCCTTGTGACCTTTGGAGTGTCGGATGCATCATTGTTGAGCTATGCTCGGGGGAAGCATTGTTTCAAACACATGAGAACCTTGAGCACTTAGCAATGATGGAGAGGGTTTTGGGTCCACTCCCAGAACACATGATAAGGAAAGCCAGTTCATCAGCTCAGAAATATTTTAGACGAGGAGCGCGTCTAAATTGGCCTGAAGGTGCTGTTTCAAGAGAGAGTATCAGAGCAGTCAAAAAACTAGATCGGCTAAAGGACTTAGTGGCGAGGAAGGCTGATCATTCAAGGGCGGTGCTGGCAGACTTGTTATATGGGCTTTTAAAATTTGAGCCATCAGAGCGTCTTACTGCCCAAGAAGCTCTAGACCATCCATTTTTCAGAAATACAACATGA
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| Protein seq | MESSRSRKRARQDWDGAGAPPPPAERAVVARGGASPPWRDDDRDGHYVFDLGENLNRRYKILSKMGEGTFGRVLECWDRETHEYVAIKVVRSIRKYRDAAMIEIDVLNRLAENERYRSLCVQIQGWFDYRNHICIVFEKLGPSLYDFLKRNRYQPFPVELVREFGRQLLESVAYMHELRLIHTDLKPENILLVSSEYIRVPGSKKNSQDEMHFKCLPKSSAIKLIDFGSTAFDNQEHSSIVSTRHYRAPEIILGLGWSFPCDLWSVGCIIVELCSGEALFQTHENLEHLAMMERVLGPLPEHMIRKASSSAQKYFRRGARLNWPEGAVSRESIRAVKKLDRLKDLVARKADHSRAVLADLLYGLLKFEPSERLTAQEALDHPFFRNTT |
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| Function | Serine/threonine-protein kinase AFC3 [UniProtKB/Swiss-Prot:P51568] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g40840 | LOC_Os01g40840.1 | Chr01 | 23090754 | 23095383 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGTCGTCGCGGTCGCGGAAGCGGGCCCGCCAGGACTGGGACGGCGCCGGCGCGCCGCCGCCGCCGGCGGAGCGGGCGGTGGTGGCGAGGGGCGGCGCGTCGCCGCCGTGGAGGGACGACGACCGCGACGGGCACTACGTGTTCGACCTCGGCGAGAACTTGAACCGACGATACAAAATCTTGAGCAAAATGGGAGAAGGTACTTTTGGGCGTGTTTTGGAATGCTGGGACCGTGAAACACATGAATATGTCGCAATAAAAGTTGTTCGTAGCATCCGCAAGTACAGGGATGCTGCAATGATTGAGATCGATGTGCTCAACCGCCTTGCAGAAAATGAGAGATACAGATCACTCTGTGTCCAGATTCAAGGATGGTTTGACTATCGCAATCATATATGCATTGTTTTTGAGAAGCTTGGGCCAAGCTTGTATGATTTTCTAAAGAGAAATAGATACCAACCTTTCCCTGTGGAACTTGTGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCATATATGCATGAATTACGCCTTATTCACACTGATCTGAAGCCAGAAAACATACTCCTTGTGTCTTCGGAGTATATAAGGGTTCCAGGTTCCAAGAAGAATTCACAAGATGAGATGCATTTCAAGTGCTTACCAAAGTCCAGTGCCATAAAGCTGATAGATTTTGGTAGTACCGCCTTTGATAATCAGGAACATAGCTCGATTGTTTCTACAAGGCATTACAGAGCACCTGAAATAATCTTAGGCTTAGGGTGGAGTTTCCCTTGTGACCTTTGGAGTGTCGGATGCATCATTGTTGAGCTATGCTCGGGGGAAGCATTGTTTCAAACACATGAGAACCTTGAGCACTTAGCAATGATGGAGAGGGTTTTGGGTCCACTCCCAGAACACATGATAAGGAAAGCCAGTTCATCAGCTCAGAAATATTTTAGACGAGGAGCGCGTCTAAATTGGCCTGAAGGTGCTGTTTCAAGAGAGAGTATCAGAGCAGTCAAAAAACTAGATCGGCTAAAGGACTTAGTGGCGAGGAAGGCTGATCATTCAAGGGCGGTGCTGGCAGACTTGTTATATGGGCTTTTAAAATTTGAGCCATCAGAGCGTCTTACTGCCCAAGAAGCTCTAGACCATCCATTTTTCAGAAATACAACATGA
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| Protein seq | MESSRSRKRARQDWDGAGAPPPPAERAVVARGGASPPWRDDDRDGHYVFDLGENLNRRYKILSKMGEGTFGRVLECWDRETHEYVAIKVVRSIRKYRDAAMIEIDVLNRLAENERYRSLCVQIQGWFDYRNHICIVFEKLGPSLYDFLKRNRYQPFPVELVREFGRQLLESVAYMHELRLIHTDLKPENILLVSSEYIRVPGSKKNSQDEMHFKCLPKSSAIKLIDFGSTAFDNQEHSSIVSTRHYRAPEIILGLGWSFPCDLWSVGCIIVELCSGEALFQTHENLEHLAMMERVLGPLPEHMIRKASSSAQKYFRRGARLNWPEGAVSRESIRAVKKLDRLKDLVARKADHSRAVLADLLYGLLKFEPSERLTAQEALDHPFFRNTT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g40840 | LOC_Os01g40840.2 | Chr01 | 23090754 | 23095249 | + | MSU_osa1r7 | ||
| CDS seq | ATGTGCTCAACCGCCTTGCAGAAAATGAGAGATACAGATCACTGTGAGTACCTCAAAATATTTGATCCCAAAAATCTTAGTCTTTTCTGTTTCTCTCCTGATCAGTCTTCCTTACTGGCCAGCTGTGTCCAGATTCAAGGATGGTTTGACTATCGCAATCATATATGCATTGTTTTTGAGAAGCTTGGGCCAAGCTTGTATGATTTTCTAAAGAGAAATAGATACCAACCTTTCCCTGTGGAACTTGTGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCATATATGCATGAATTACGCCTTATTCACACTGATCTGAAGCCAGAAAACATACTCCTTGTGTCTTCGGAGTATATAAGGGTTCCAGGTTCCAAGAAGAATTCACAAGATGAGATGCATTTCAAGTGCTTACCAAAGTCCAGTGCCATAAAGCTGATAGATTTTGGTAGTACCGCCTTTGATAATCAGGAACATAGCTCGATTGTTTCTACAAGGCATTACAGAGCACCTGAAATAATCTTAGGCTTAGGGTGGAGTTTCCCTTGTGACCTTTGGAGTGTCGGATGCATCATTGTTGAGCTATGCTCGGGGGAAGCATTGTTTCAAACACATGAGAACCTTGAGCACTTAGCAATGATGGAGAGGGTTTTGGGTCCACTCCCAGAACACATGATAAGGAAAGCCAGTTCATCAGCTCAGAAATATTTTAGACGAGGAGCGCGTCTAAATTGGCCTGAAGGTGCTGTTTCAAGAGAGAGTATCAGAGCAGTCAAAAAACTAGATCGGCTAAAGGACTTAGTGGCGAGGAAGGCTGATCATTCAAGGGCGGTGCTGGCAGACTTGTTATATGGGCTTTTAAAATTTGAGCCATCAGAGCGTCTTACTGCCCAAGAAGCTCTAGACCATCCATTTTTCAGAAATACAACATGA
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| Protein seq | MCSTALQKMRDTDHCEYLKIFDPKNLSLFCFSPDQSSLLASCVQIQGWFDYRNHICIVFEKLGPSLYDFLKRNRYQPFPVELVREFGRQLLESVAYMHELRLIHTDLKPENILLVSSEYIRVPGSKKNSQDEMHFKCLPKSSAIKLIDFGSTAFDNQEHSSIVSTRHYRAPEIILGLGWSFPCDLWSVGCIIVELCSGEALFQTHENLEHLAMMERVLGPLPEHMIRKASSSAQKYFRRGARLNWPEGAVSRESIRAVKKLDRLKDLVARKADHSRAVLADLLYGLLKFEPSERLTAQEALDHPFFRNTT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.347069 | 0.623409 | 1.223477 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0590900 | RBH | 0.550505 | 1.058117 | 5.206822 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0590900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0023620 | RBH | 0.357651 | 2.562901 | 4.214345 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0023190 | RBH | 0.169221 | 0.991578 | 2.400526 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0023510 | RBH | 1.465007 | 0.000000 | 6.519214 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0022920 | RBH | 0.037961 | 0.153869 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0022610 | RBH | 0.000000 | 0.000000 | 11.327125 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0385600 | RBH | 6.519944 | 13.8544245 | 32.210149 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0022550 | RBH | 0.387896 | 0.318597 | 0.573793 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0374300 | RBH | 4.3698785 | 9.645088 | 19.802124 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0022540 | RBH | 0.151398 | 0.346642 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0022490 | RBH | 0.171752 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0022770 | RBH | 2.147319 | 16.463795 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0022780 | RBH | 0.477039 | 0.353600 | 0.524439 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0022590 | RBH | 0.465000 | 3.444213 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G022920 | RBH | 0.256125 | 1.976373 | 1.665457 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0022590 | RBH | 2.647270 | 9.971820 | 3.703799 |
