Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g25065 | OGI:01056340 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:14137598-14139142 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCCCAAATAATTCACTTAGGAGTCGGTAAATAAAGATTTAATTTCATTTCTTCAATTTGTTCTCGTCTTCAAAGTTTATAGCTTTCGTGCTAGCTTCATCGATGTTACCCACCAAATAAAAAGCCTGTTCGGGTAGGCCGTCTAATTCTCCGGAAAGGATTAGTTGAAATCCCCTAATAGTTTCTGCAAGACCAACATACTTTCCCGGAGAACCGGTAAAAACTTCTGCCACAAAAAACGGTTGTGATAAGAAGCGCTCAATTTTTCGTGCTCTTGCTACAGTTAAACGATCCTCCTCCGATAATTCATCCAACCTAAGAATTGCGATAATGTCCTGAAGTTCTTTGTAACGTTGTAAAGTTTGCTTAACTCTTTGCGCAGTTTCATAATGTTCGTTGCCAACGATCCAAGGTTGTAACATAGTTGAGGTTGAATCTGAAGGATCTACTGCAGGATAAATCCCTTTGGATGCTAATCCTCTGGAAAGTACGGTAGTAGCATACAAATGTGCAAATGTTGTAGCATGAGCAGGGTCGGTCAAATCATCCGCAGGTATATAAACTGCTTGGATCGAAGTTATAGATCCTTTTTAGTATAAGTAATTCTTTCTTGCAAAGAAACCATTTCTGTACTAAGAGTAAGTTGATAACCCACTGCAGAGGGCATTCTCCCTAATAAGGCAGATACCTCCGATCCTGCTTGAACAAAACGAAAGATATTATCGATGAATAGAAGCACGTCTTGCTTATTAACATCTCGGAAATATTCTGCCATAGTTAGGGCGGTCAAACCAACTCTCATACGAGCTCCTGGCGGTTCATTCATTTGGCCATAGACTAGAGCTACCTTTGATTCCTCAAGATTTTTTTCATTAATTACTCCAGATTCCTTCATTTCCATATAAAGATCATTTCCTTCACAAGTCCGTTCCCCTGCTCCGCCAAATACGGATACGCCCCCGTGAGCTTTAGCAATATTGTTGATTAATTCCATGATGAGTATTGTTTTACCTACTCCAGCTCCCCCAAATAGTCTGATTTTTCCTCCACGCCGATAAGGAGCTAAAAGATCGATCACCTTAATACCAGTTTCAAAGATGGATAATTTCGTATCTAACTCGATAAAGGCGGGCGCGGATCTATGAATAGGGAATGTTGCACTAGTATCTACAGGACCCAAATTGTCAACAGGCACCCCAAGAACGTTGAAAATTCGTCCAAGAGTAGCTCCACCGATAGGAACACTGAGAGGAGCTCCCGTGTCAATCACTTCCATTCCTCTCATCAACCTATCTGTAGCACTCATAGCTAGAGCTCTAACTCGATAATTTCCTAATAATTGTTGTACCTCACAAGTTACATTAATAATTGTTGTACCGTCAGTGTCTCGACTCTTGACTACCAAAGCATTATAAATATAAGGTAACTTGCCCGGGGGAAAAGTGACATCCAGCACGGGTCCAATAATTTGATTGATACGCCCTGTACTTTTTTCTTCAACTGTAGAAACCCCGGGATGAGAAGTAGTAGGATTGGTTCTCATAAT
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| CDS seq | ATGAGAACCAATCCTACTACTTCTCATCCCGGGGTTTCTACAGTTGAAGAAAAAAGTACAGGGCGTATCAATCAAATTATTGGACCCGTGCTGGATGTCACTTTTCCCCCGGGCAAGTTACCTTATATTTATAATGCTTTGGTAGTCAAGAGTCGAGACACTGACGGTACAACAATTATTAATGTAACTTGTGAGGTACAACAATTATTAGGAAATTATCGAGTTAGAGCTCTAGCTATGAGTGCTACAGATAGGTTGATGAGAGGAATGGAAGTGATTGACACGGGAGCTCCTCTCAGTGTTCCTATCGGTGGAGCTACTCTTGGACGAATTTTCAACGTTCTTGGGGTGCCTGTTGACAATTTGGGTCCTGTAGATACTAGTGCAACATTCCCTATTCATAGATCCGCGCCCGCCTTTATCGAGTTAGATACGAAATTATCCATCTTTGAAACTGGTATTAAGGTGATCGATCTTTTAGCTCCTTATCGGCGTGGAGGAAAAATCAGACTATTTGGGGGAGCTGGAGTAGGTAAAACAATACTCATCATGGAATTAATCAACAATATTGCTAAAGCTCACGGGGGCGTATCCGTATTTGGCGGAGCAGGGGAACGGACTTGTGAAGGAAATGATCTTTATATGGAAATGAAGGAATCTGGAGTAATTAATGAAAAAAATCTTGAGGAATCAAAGGTAGCTCTAGTCTATGGCCAAATGAATGAACCGCCAGGAGCTCGTATGAGAGTTGGTTTGACCGCCCTAACTATGGCAGAATATTTCCGAGATGTTAATAAGCAAGACGTGCTTCTATTCATCGATAATATCTTTCGTTTTGTTCAAGCAGGATCGGAGGTATCTGCCTTATTAGGGAGAATGCCCTCTGCAGTGGGTTATCAACTTACTCTTAGTACAGAAATGGTTTCTTTGCAAGAAAGAATTACTTATACTAAAAAGGATCTATAA
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| Protein seq | MRTNPTTSHPGVSTVEEKSTGRINQIIGPVLDVTFPPGKLPYIYNALVVKSRDTDGTTIINVTCEVQQLLGNYRVRALAMSATDRLMRGMEVIDTGAPLSVPIGGATLGRIFNVLGVPVDNLGPVDTSATFPIHRSAPAFIELDTKLSIFETGIKVIDLLAPYRRGGKIRLFGGAGVGKTILIMELINNIAKAHGGVSVFGGAGERTCEGNDLYMEMKESGVINEKNLEESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQLTLSTEMVSLQERITYTKKDL |
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| Function | ATP synthase subunit beta, chloroplastic [UniProtKB/Swiss-Prot:P12085] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g25065 | LOC_Os01g25065.1 | Chr01 | 14137598 | 14139142 | - | MSU_osa1r7 | ||
| CDS seq | ATGAGAACCAATCCTACTACTTCTCATCCCGGGGTTTCTACAGTTGAAGAAAAAAGTACAGGGCGTATCAATCAAATTATTGGACCCGTGCTGGATGTCACTTTTCCCCCGGGCAAGTTACCTTATATTTATAATGCTTTGGTAGTCAAGAGTCGAGACACTGACGGTACAACAATTATTAATGTAACTTGTGAGGTACAACAATTATTAGGAAATTATCGAGTTAGAGCTCTAGCTATGAGTGCTACAGATAGGTTGATGAGAGGAATGGAAGTGATTGACACGGGAGCTCCTCTCAGTGTTCCTATCGGTGGAGCTACTCTTGGACGAATTTTCAACGTTCTTGGGGTGCCTGTTGACAATTTGGGTCCTGTAGATACTAGTGCAACATTCCCTATTCATAGATCCGCGCCCGCCTTTATCGAGTTAGATACGAAATTATCCATCTTTGAAACTGGTATTAAGGTGATCGATCTTTTAGCTCCTTATCGGCGTGGAGGAAAAATCAGACTATTTGGGGGAGCTGGAGTAGGTAAAACAATACTCATCATGGAATTAATCAACAATATTGCTAAAGCTCACGGGGGCGTATCCGTATTTGGCGGAGCAGGGGAACGGACTTGTGAAGGAAATGATCTTTATATGGAAATGAAGGAATCTGGAGTAATTAATGAAAAAAATCTTGAGGAATCAAAGGTAGCTCTAGTCTATGGCCAAATGAATGAACCGCCAGGAGCTCGTATGAGAGTTGGTTTGACCGCCCTAACTATGGCAGAATATTTCCGAGATGTTAATAAGCAAGACGTGCTTCTATTCATCGATAATATCTTTCGTTTTGTTCAAGCAGGATCGGAGGTATCTGCCTTATTAGGGAGAATGCCCTCTGCAGTGGGTTATCAACTTACTCTTAGTACAGAAATGGTTTCTTTGCAAGAAAGAATTACTTATACTAAAAAGGATCTATAA
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| Protein seq | MRTNPTTSHPGVSTVEEKSTGRINQIIGPVLDVTFPPGKLPYIYNALVVKSRDTDGTTIINVTCEVQQLLGNYRVRALAMSATDRLMRGMEVIDTGAPLSVPIGGATLGRIFNVLGVPVDNLGPVDTSATFPIHRSAPAFIELDTKLSIFETGIKVIDLLAPYRRGGKIRLFGGAGVGKTILIMELINNIAKAHGGVSVFGGAGERTCEGNDLYMEMKESGVINEKNLEESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQLTLSTEMVSLQERITYTKKDL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.491604 | 5.173028 | 0.411382 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g39740 | SBH | 23.838846 | 20.550503 | 2.791731 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0036440 | SBH | 195.072189 | 54.160545 | 311.076752 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0006760 | SBH | 72.391319 | 5.758027 | 84.931236 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0006760 | SBH | 60.821098 | 5.132908 | 57.434643 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0015750 | RBH | 0.796892 | 0.038164 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0321300 | SBH | 4556.696533 | 300.042511 | 311.625824 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0332700 | SBH | 3890.892944 | 145.379814 | 236.1027605 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0019800 | SBH | 238.438507 | 0.0 | 98.746689 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0015610 | RBH | 76.981033 | 8.796945 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G006520 | SBH | 94.360809 | 25.380814 | 174.393448 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0017740 | SBH | 446.197113 | 153.654099 | 868.082825 |
