Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_01g0015750 | OGI:01056340 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr01:14041991-14042956 | ||||||||
| Gene Symbol | AtpB | ||||||||||
| DNA seq | ttatagatcctttttagtataagtaattctttcttgcaaagaaaccatttctgtactaagagtaagttgataacccactgcagagggcattctccctaataaggcagatacctccgatcctgcttgaacaaaacgaaagatattatcgatgaatagaagcacgtcttgcttattaacatctcggaaatattctgccatagttagggcagtcaaaccaactctcatacgagctcctggcggttcattcatttggccatagactagagctacctttgattcctcaagatttttttcattaattactccagattccttcatttccatataaagatcatttccttcacaagtccgttcccctgctccgccaaatacggatacgcccccgtgagctttagcaatattgttgattaattccatgatgagtattgttttacctactccagctcccccaaatagtctgatttttcctccacgccgataaggagctaaaagatcgaccaccttaataccagtttcaaagatggataatttcgtatctaactcgataaaggcgggcgcggatctatgaatagggaatgttgcactagtatctacaggacccaaattgtcaacaggcaccccaagaacgttgaaaattcgtccaagagtagctccaccgataggaacactgagaggagctcccgtgtcaatcacttccattcctctcatcaacctatctgtagcactcatagctagagctctaactcgataatttcctaataattgttgtacctcacaagttacattaataattgttgtaccgtcagtgtctcgactcttgactaccaaagcattataaatataaggtaacttgcccgggggaaaagtgacatccagcacgggtccaataatttgattgatacgccctgtacttttttcttcaactgtagaaaccccgggatgagaagtagtaggattggttctcat
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| CDS seq | atgagaaccaatcctactacttctcatcccggggtttctacagttgaagaaaaaagtacagggcgtatcaatcaaattattggacccgtgctggatgtcacttttcccccgggcaagttaccttatatttataatgctttggtagtcaagagtcgagacactgacggtacaacaattattaatgtaacttgtgaggtacaacaattattaggaaattatcgagttagagctctagctatgagtgctacagataggttgatgagaggaatggaagtgattgacacgggagctcctctcagtgttcctatcggtggagctactcttggacgaattttcaacgttcttggggtgcctgttgacaatttgggtcctgtagatactagtgcaacattccctattcatagatccgcgcccgcctttatcgagttagatacgaaattatccatctttgaaactggtattaaggtggtcgatcttttagctccttatcggcgtggaggaaaaatcagactatttgggggagctggagtaggtaaaacaatactcatcatggaattaatcaacaatattgctaaagctcacgggggcgtatccgtatttggcggagcaggggaacggacttgtgaaggaaatgatctttatatggaaatgaaggaatctggagtaattaatgaaaaaaatcttgaggaatcaaaggtagctctagtctatggccaaatgaatgaaccgccaggagctcgtatgagagttggtttgactgccctaactatggcagaatatttccgagatgttaataagcaagacgtgcttctattcatcgataatatctttcgttttgttcaagcaggatcggaggtatctgccttattagggagaatgccctctgcagtgggttatcaacttactcttagtacagaaatggtttctttgcaagaaagaattacttatactaaaaaggatctataa
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| Protein seq | MRTNPTTSHPGVSTVEEKSTGRINQIIGPVLDVTFPPGKLPYIYNALVVKSRDTDGTTIINVTCEVQQLLGNYRVRALAMSATDRLMRGMEVIDTGAPLSVPIGGATLGRIFNVLGVPVDNLGPVDTSATFPIHRSAPAFIELDTKLSIFETGIKVVDLLAPYRRGGKIRLFGGAGVGKTILIMELINNIAKAHGGVSVFGGAGERTCEGNDLYMEMKESGVINEKNLEESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQLTLSTEMVSLQERITYTKKDL |
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| Function | ATP synthase subunit beta, chloroplastic [UniProtKB/Swiss-Prot:P12085] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0015750 | OsARC_01g0015750.01 | Chr01 | 14041991 | 14042956 | - | NAM | ||
| CDS seq | atgagaaccaatcctactacttctcatcccggggtttctacagttgaagaaaaaagtacagggcgtatcaatcaaattattggacccgtgctggatgtcacttttcccccgggcaagttaccttatatttataatgctttggtagtcaagagtcgagacactgacggtacaacaattattaatgtaacttgtgaggtacaacaattattaggaaattatcgagttagagctctagctatgagtgctacagataggttgatgagaggaatggaagtgattgacacgggagctcctctcagtgttcctatcggtggagctactcttggacgaattttcaacgttcttggggtgcctgttgacaatttgggtcctgtagatactagtgcaacattccctattcatagatccgcgcccgcctttatcgagttagatacgaaattatccatctttgaaactggtattaaggtggtcgatcttttagctccttatcggcgtggaggaaaaatcagactatttgggggagctggagtaggtaaaacaatactcatcatggaattaatcaacaatattgctaaagctcacgggggcgtatccgtatttggcggagcaggggaacggacttgtgaaggaaatgatctttatatggaaatgaaggaatctggagtaattaatgaaaaaaatcttgaggaatcaaaggtagctctagtctatggccaaatgaatgaaccgccaggagctcgtatgagagttggtttgactgccctaactatggcagaatatttccgagatgttaataagcaagacgtgcttctattcatcgataatatctttcgttttgttcaagcaggatcggaggtatctgccttattagggagaatgccctctgcagtgggttatcaacttactcttagtacagaaatggtttctttgcaagaaagaattacttatactaaaaaggatctataa
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| Protein seq | MRTNPTTSHPGVSTVEEKSTGRINQIIGPVLDVTFPPGKLPYIYNALVVKSRDTDGTTIINVTCEVQQLLGNYRVRALAMSATDRLMRGMEVIDTGAPLSVPIGGATLGRIFNVLGVPVDNLGPVDTSATFPIHRSAPAFIELDTKLSIFETGIKVVDLLAPYRRGGKIRLFGGAGVGKTILIMELINNIAKAHGGVSVFGGAGERTCEGNDLYMEMKESGVINEKNLEESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQLTLSTEMVSLQERITYTKKDL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.796892 | 0.038164 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0685800 | SBH | 13.888079 | 14.160533 | 82.462624 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g25065 | RBH | 4.491604 | 5.173028 | 0.411382 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0685800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0036440 | RBH | 195.072189 | 54.160545 | 311.076752 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0029060 | SBH | 1.690834 | 66.264549 | 51.273251 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0029450 | SBH | 4.820353 | 258.773254 | 100.463524 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0006660 | RBH | 5.490091 | 0.245439 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0028360 | SBH | 32.971130 | 348.798492 | 283.181335 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0321300 | SBH | 4556.696533 | 300.042511 | 311.625824 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0332700 | SBH | 3890.892944 | 145.379814 | 236.1027605 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0028390 | SBH | 1.371496 | 2.039833 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0028260 | SBH | 3.153829 | 212.338226 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0028560 | SBH | 19.349724 | 240.978226 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0028720 | SBH | 2.369555 | 19.992865 | 18.965485 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0015610 | RBH | 76.981033 | 8.796945 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G006520 | SBH | 94.360809 | 25.380814 | 174.393448 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0017740 | SBH | 446.197113 | 153.654099 | 868.082825 |
