Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g39740 | OGI:05004580 | 1/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:23589443-23590939 | ||||||||
| Gene Symbol | OsVHA-B, VHA-B | ||||||||||
| DNA seq | ATGAGAACCAATCCTACTACTTCTCATCCCGGGGTTTCTACAATTGAAGAAAAAAGTACAGGGCGTATCGATCAAATTATTGGACCCGTGCTGGATGTCACTTTTCCCCCAGGCAAGTTACCTTATATTTATAATGCTTTGGTAGTCAAGAGTCGAGACACTGACGGTAAGCAAATTAATGTAACTTGTGAGGAACAACAATTATTAGGAAATAATCGAGTTAGAGTTGTAGCTATGAGTGCTACAGATGGGTTGATGAGAGGAATGGAAGTGATTGACACAGGAGCTCCTCTCAGTGTTCCTGTCGGTGGAGCTACTCTTGGACGAATTTTCAACGTTCTTGGGGAGCCTGTTGACAATTTGGGTCCTGTAGATACTAGTGCAACATTCCCTATTCATAGATCCGCGCCCGCTTTTATCGAGTTAGATACGAAATTATCCATCTTTGAAACTGGTATTAAGGTGGTCGATCTTTTAGCTCCTTATCGGCGTGGAGGAAAAATCGGACTATTTGGGGGAGCTGGAGTAGGTAAAACAGTACTCATCATGGAATTAATCAACAATATTGCTAAAGCTCACGGGGGCGTATCCGTATTTGGCGGAGTAGGGGAACGGACTCGTGAAGGAAATGATCTTTATATGGAAATGAAGGAATCTGGAGTATTTAATGAAAAAAATCTTGAGGAATCAAAGGTAGCTCTAGTCTATGGCCAAATGAATGAACCGCCAGGAGCTCGTATGAGAGTTGGTTTGACTGCCCTAACTATGGCAGAATATTTCCGAGATGTTAATAAGCAAGACGTGCTTCTATTCATCGATAATATCTTTCGTTTTGTTCAAGCAGGATCGGAGATATCTGCCTTATTAGGGAGAATGCCCTCTGCAGTGGGTTATCAACCTACTCTTAGTACAGAAATGGGTTCTTTGCAAGAAAGAATTACTTCTACTAAAAAGGGATCTATAACTTCGATCCAAGCGGTTTATGTACCTGCGGACGATTTGACCGACCCTGCTCCTCCTACAACATTTGCACATTTGGATGCTACTACCGTACTTTCCAGAGGATTAGCTTCCAAAGGGATTTATCCTGCAGTAGATCCTTTAGATTCAACCTCAACTATGTTACAACCTCGGATCGTTGGCAACGAACATTATGAAACTGTGCAAAGAGTTAAGCAAACTTTACAACGTTACAAAGAACTTCAGGACATTATCGCAATTCTTGGGTTGGATGAATTATCGGAGGAGGATCGTTTAACTGTAGCAAGAGCACGAAAAATTGAGCGCTTCTTATCACAACCGTTTTTTGTGGCAGAAGTTTTTACCGGTTCTCCGAGAAAGTATGTTGGTCTTGCAGAAACTATTAGGGGATTTCAACTAATCCTTTCCGGAGAATTAGACGGCCTACCCGAACAGGCTTTTTATTTGGTGGGTAACATCGATGAAGCTAGCACGAAAGCTATAAACTTAGAAGAGGAGAACAAATTGAAGAAATGA
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| CDS seq | ATGAGAACCAATCCTACTACTTCTCATCCCGGGGTTTCTACAATTGAAGAAAAAAGTACAGGGCGTATCGATCAAATTATTGGACCCGTGCTGGATGTCACTTTTCCCCCAGGCAAGTTACCTTATATTTATAATGCTTTGGTAGTCAAGAGTCGAGACACTGACGGTAAGCAAATTAATGTAACTTGTGAGGAACAACAATTATTAGGAAATAATCGAGTTAGAGTTGTAGCTATGAGTGCTACAGATGGGTTGATGAGAGGAATGGAAGTGATTGACACAGGAGCTCCTCTCAGTGTTCCTGTCGGTGGAGCTACTCTTGGACGAATTTTCAACGTTCTTGGGGAGCCTGTTGACAATTTGGGTCCTGTAGATACTAGTGCAACATTCCCTATTCATAGATCCGCGCCCGCTTTTATCGAGTTAGATACGAAATTATCCATCTTTGAAACTGGTATTAAGGTGGTCGATCTTTTAGCTCCTTATCGGCGTGGAGGAAAAATCGGACTATTTGGGGGAGCTGGAGTAGGTAAAACAGTACTCATCATGGAATTAATCAACAATATTGCTAAAGCTCACGGGGGCGTATCCGTATTTGGCGGAGTAGGGGAACGGACTCGTGAAGGAAATGATCTTTATATGGAAATGAAGGAATCTGGAGTATTTAATGAAAAAAATCTTGAGGAATCAAAGGTAGCTCTAGTCTATGGCCAAATGAATGAACCGCCAGGAGCTCGTATGAGAGTTGGTTTGACTGCCCTAACTATGGCAGAATATTTCCGAGATGTTAATAAGCAAGACGTGCTTCTATTCATCGATAATATCTTTCGTTTTGTTCAAGCAGGATCGGAGATATCTGCCTTATTAGGGAGAATGCCCTCTGCAGTGGGTTATCAACCTACTCTTAGTACAGAAATGGGTTCTTTGCAAGAAAGAATTACTTCTACTAAAAAGGGATCTATAACTTCGATCCAAGCGGTTTATGTACCTGCGGACGATTTGACCGACCCTGCTCCTCCTACAACATTTGCACATTTGGATGCTACTACCGTACTTTCCAGAGGATTAGCTTCCAAAGGGATTTATCCTGCAGTAGATCCTTTAGATTCAACCTCAACTATGTTACAACCTCGGATCGTTGGCAACGAACATTATGAAACTGTGCAAAGAGTTAAGCAAACTTTACAACGTTACAAAGAACTTCAGGACATTATCGCAATTCTTGGGTTGGATGAATTATCGGAGGAGGATCGTTTAACTGTAGCAAGAGCACGAAAAATTGAGCGCTTCTTATCACAACCGTTTTTTGTGGCAGAAGTTTTTACCGGTTCTCCGAGAAAGTATGTTGGTCTTGCAGAAACTATTAGGGGATTTCAACTAATCCTTTCCGGAGAATTAGACGGCCTACCCGAACAGGCTTTTTATTTGGTGGGTAACATCGATGAAGCTAGCACGAAAGCTATAAACTTAGAAGAGGAGAACAAATTGAAGAAATGA
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| Protein seq | MRTNPTTSHPGVSTIEEKSTGRIDQIIGPVLDVTFPPGKLPYIYNALVVKSRDTDGKQINVTCEEQQLLGNNRVRVVAMSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTSATFPIHRSAPAFIELDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVFNEKNLEESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEISALLGRMPSAVGYQPTLSTEMGSLQERITSTKKGSITSIQAVYVPADDLTDPAPPTTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPRIVGNEHYETVQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPRKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEASTKAINLEEENKLKK |
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| Function | ATP synthase subunit beta, chloroplastic [UniProtKB/Swiss-Prot:P12085] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g39740 | LOC_Os06g39740.1 | Chr06 | 23589443 | 23590939 | + | MSU_osa1r7 | ||
| CDS seq | ATGAGAACCAATCCTACTACTTCTCATCCCGGGGTTTCTACAATTGAAGAAAAAAGTACAGGGCGTATCGATCAAATTATTGGACCCGTGCTGGATGTCACTTTTCCCCCAGGCAAGTTACCTTATATTTATAATGCTTTGGTAGTCAAGAGTCGAGACACTGACGGTAAGCAAATTAATGTAACTTGTGAGGAACAACAATTATTAGGAAATAATCGAGTTAGAGTTGTAGCTATGAGTGCTACAGATGGGTTGATGAGAGGAATGGAAGTGATTGACACAGGAGCTCCTCTCAGTGTTCCTGTCGGTGGAGCTACTCTTGGACGAATTTTCAACGTTCTTGGGGAGCCTGTTGACAATTTGGGTCCTGTAGATACTAGTGCAACATTCCCTATTCATAGATCCGCGCCCGCTTTTATCGAGTTAGATACGAAATTATCCATCTTTGAAACTGGTATTAAGGTGGTCGATCTTTTAGCTCCTTATCGGCGTGGAGGAAAAATCGGACTATTTGGGGGAGCTGGAGTAGGTAAAACAGTACTCATCATGGAATTAATCAACAATATTGCTAAAGCTCACGGGGGCGTATCCGTATTTGGCGGAGTAGGGGAACGGACTCGTGAAGGAAATGATCTTTATATGGAAATGAAGGAATCTGGAGTATTTAATGAAAAAAATCTTGAGGAATCAAAGGTAGCTCTAGTCTATGGCCAAATGAATGAACCGCCAGGAGCTCGTATGAGAGTTGGTTTGACTGCCCTAACTATGGCAGAATATTTCCGAGATGTTAATAAGCAAGACGTGCTTCTATTCATCGATAATATCTTTCGTTTTGTTCAAGCAGGATCGGAGATATCTGCCTTATTAGGGAGAATGCCCTCTGCAGTGGGTTATCAACCTACTCTTAGTACAGAAATGGGTTCTTTGCAAGAAAGAATTACTTCTACTAAAAAGGGATCTATAACTTCGATCCAAGCGGTTTATGTACCTGCGGACGATTTGACCGACCCTGCTCCTCCTACAACATTTGCACATTTGGATGCTACTACCGTACTTTCCAGAGGATTAGCTTCCAAAGGGATTTATCCTGCAGTAGATCCTTTAGATTCAACCTCAACTATGTTACAACCTCGGATCGTTGGCAACGAACATTATGAAACTGTGCAAAGAGTTAAGCAAACTTTACAACGTTACAAAGAACTTCAGGACATTATCGCAATTCTTGGGTTGGATGAATTATCGGAGGAGGATCGTTTAACTGTAGCAAGAGCACGAAAAATTGAGCGCTTCTTATCACAACCGTTTTTTGTGGCAGAAGTTTTTACCGGTTCTCCGAGAAAGTATGTTGGTCTTGCAGAAACTATTAGGGGATTTCAACTAATCCTTTCCGGAGAATTAGACGGCCTACCCGAACAGGCTTTTTATTTGGTGGGTAACATCGATGAAGCTAGCACGAAAGCTATAAACTTAGAAGAGGAGAACAAATTGAAGAAATGA
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| Protein seq | MRTNPTTSHPGVSTIEEKSTGRIDQIIGPVLDVTFPPGKLPYIYNALVVKSRDTDGKQINVTCEEQQLLGNNRVRVVAMSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTSATFPIHRSAPAFIELDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVFNEKNLEESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEISALLGRMPSAVGYQPTLSTEMGSLQERITSTKKGSITSIQAVYVPADDLTDPAPPTTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPRIVGNEHYETVQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPRKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEASTKAINLEEENKLKK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 23.838846 | 20.550503 | 2.791731 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0568200 | SBH | 12.898626 | 15.315991 | 47.557537 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g21266 | RBH | 145.910477 | 139.534317 | 22.558170 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0568200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0019950 | SBH | 6.588201 | 229.948883 | 51.753674 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0019820 | SBH | 2.579736 | 57.189404 | 29.879988 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0019880 | SBH | 10.502033 | 240.620148 | 96.839249 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0019650 | SBH | 1.287378 | 7.595862 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0020110 | SBH | 54.077457 | 248.929855 | 172.186752 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0427600 | SBH | 34.488817 | 45.383814 | 65.6629845 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0019560 | SBH | 2.397065 | 17.706615 | 15.728746 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0410800 | SBH | 42.457781 | 31.2910455 | 36.9617975 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0020000 | SBH | 0.062438 | 0.270156 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0020000 | SBH | 4.112705 | 174.338989 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0019640 | SBH | 31.173262 | 201.053558 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0019800 | SBH | 238.438507 | 0.0 | 98.746689 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0019790 | SBH | 2.603081 | 95.120766 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G006520 | SBH | 94.360809 | 25.380814 | 174.393448 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0019860 | SBH | 10.686189 | 190.941544 | 112.484169 |
