Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g12770 | OGI:01021950 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:7071481-7073789 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCGCGCAACTACAACCAAGTAACCAAACGCTTTCCGTTGCACGCACGCGCGCAAAACAATGGCCGTCTCACTCCTCCCCGCCGTCCTTGTACTCCTCGCCATCGTCGCGCCGCTCCTGTACCTCGTGCTGCTTCCCGCCGTGAAGTACACGACGAGAAATGGCGCTGCGAGGTGGGAGGACGACGGCGGTGATGGCCGGCGCCGCCGGAGGCTGCCGCCGTCGCCGCGGGGGCTCCCGCTGCTCGGCCACCTCCACCTGCTCGGCGCGCTGCCGCACCGGGCACTGCGGTCCCTCGCCGCGGCGCACGGCCCGGTGCTGCTGCTGCGGCTCGGCCGCGTTCCCGTGGTGGTCGTGTCGTCGGCGGCCGCGGCCGAGGAGGTGATGCGGTCGCGGGACATGGAGTTCGCGAGCCGGCCCAGGATGGCCATGGCCGAGCTGCTGCTCTACGGCGGCCGCGACGTCGCGTTCGCGCCCTACGGCGAGTACTGGCGCCAGGCGCGCCGCATCTGCGTGGTCCACCTCCTCAGCGCGCGCCGCGTCCTCTCGTTCCGCCGCGTCAGGGAGGAGGAGGCCGCCGCGCTCGTCGGCCGCGTCCGCGCCGCCGCCGCCGACGTCGTCGTCGACCTGTCCGACCTCCTCATCGCTTACTCCAACACCGTCTTGACGCGCATCGCGTTCGGCGACGAGAGCGCGCGCGGCGGCGGCGGCGGCGGCGACAGGGGGCGCGAGCTGAGGAAGGTGTTCGACGACTTCGCGAGGTTGCTCGGGACGGAGCCGATGGGGGAGCTCTTGCCATGGTTCTGGTGGGTGGACGCCTTGAGGGGGATAGACGGGAAGGTGCAGCGCACGTTTGAGGCGCTGGACGGCATCCTCGAGAGGGTGATCGACGATCACCGTCGCCGCCGTGAAGGCGGCCGGCGTATGGACGACGACGGCGGCGGCGATCACCGGGATTTCGTGGACGTGTTGCTCGACGTGAACGAGACGGACAAGGACGCTGGCATTCAGCTCGGCACCGTCGAAATCAAGGCTATTATCATGGTATGAATCGAGCTATAGTCTAGTTGGAATACTAGCACTCCTTAGTCCAAAGGTTTTAAAACTCTGATCATCATGTTATCTTGGAACAATTTTATAATATTAAATAGGTGTAATTGTAGTGATTTTTAAGGTAATTGTATGCAAAATATGTTTCTTGTTTCAAACTAGGCAATAAAAAATTATTAATGATCAAAGTTTTAAAAGATTAACAAAATTTTATTCTAAATATCACATATTTATGACAAAAGTGAATACTGAATATTAATATAGCTGATAGGGCAATTTTACCATATTAAAACAGTGTCGGGAGGTATCGTATTTATTAGTATAAAATTTAGTACCTCCAGGTACTAATTAATTAGGTATCAAAAAATTTAGTGCAAAATTTAGATACCTTGAGGTTAAGGTACTGTGAAATTTCCGTAGCTGATATGCTTCTTGCTTCACGGACACGAGCAGGACATGTTTGTAGGGGGCTCAGACACTACGACCACGATGATGGCATGGACCATGGCCGAGCTGATCAACCACCCACGCGCCATGCGCAAAGCGCAGAACGAGATCTGGGCAGTCGTGGGCAACACTAGTCATGTCACCAAGGACCACGTGGACAAGCTGCCCTACCTCAAGGCTGTTTTCAAGGAGACGCTCCGGCTACACCCACCACTCCCGCTCCTCATCCCACGAGAGCCACCGGCGGACACCCAGATCCTGGGTTACACCATACCAGCGCACACGCGGGTGGTGATCAACGCGTGGGCCATCGGCCGAGACGCGGCAGCATGGGGGCAGCAACCGGACGAGTTCTCACCGGAGAAATTCCTCAACAGCACCATTGACTACAAGGGACAGGACTTCGAGCTGCTACCATTTGGCGCCGGTAGGAGGGGGTGCCCCGGGATCGTGTTCGGGGTGTCAGCCATGGAGATAGCACTCGCGAGCTTGCTCTACCATTTTGACTGGGAGGCGGCGGCAACTGATCACAGGAGGAGGGGCAGCCAAGCATGGGCGTTGCCAGTAGACATGAGTGAGGTCAATGGGATAGCTGTTCATCTCAAGTATGGTCTACATGTCGTCGCTAAACCACGTATGCCTTAACTTGAGAAAAGATGTTACCATCTGCAGTTCAACTAATAGGACCCTGGTTATGTATTGGTTGATTAACTTTTGAGGATATGGGATATCCTATCAATGTAGACCTCACTCGAGGAGATTGAATCGATAATGTGGAACACAACTACAACAGTCCATGAGTGATGGTGATGGA
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| CDS seq | ATGGCCGTCTCACTCCTCCCCGCCGTCCTTGTACTCCTCGCCATCGTCGCGCCGCTCCTGTACCTCGTGCTGCTTCCCGCCGTGAAGTACACGACGAGAAATGGCGCTGCGAGGTGGGAGGACGACGGCGGTGATGGCCGGCGCCGCCGGAGGCTGCCGCCGTCGCCGCGGGGGCTCCCGCTGCTCGGCCACCTCCACCTGCTCGGCGCGCTGCCGCACCGGGCACTGCGGTCCCTCGCCGCGGCGCACGGCCCGGTGCTGCTGCTGCGGCTCGGCCGCGTTCCCGTGGTGGTCGTGTCGTCGGCGGCCGCGGCCGAGGAGGTGATGCGGTCGCGGGACATGGAGTTCGCGAGCCGGCCCAGGATGGCCATGGCCGAGCTGCTGCTCTACGGCGGCCGCGACGTCGCGTTCGCGCCCTACGGCGAGTACTGGCGCCAGGCGCGCCGCATCTGCGTGGTCCACCTCCTCAGCGCGCGCCGCGTCCTCTCGTTCCGCCGCGTCAGGGAGGAGGAGGCCGCCGCGCTCGTCGGCCGCGTCCGCGCCGCCGCCGCCGACGTCGTCGTCGACCTGTCCGACCTCCTCATCGCTTACTCCAACACCGTCTTGACGCGCATCGCGTTCGGCGACGAGAGCGCGCGCGGCGGCGGCGGCGGCGGCGACAGGGGGCGCGAGCTGAGGAAGGTGTTCGACGACTTCGCGAGGTTGCTCGGGACGGAGCCGATGGGGGAGCTCTTGCCATGGTTCTGGTGGGTGGACGCCTTGAGGGGGATAGACGGGAAGGTGCAGCGCACGTTTGAGGCGCTGGACGGCATCCTCGAGAGGGTGATCGACGATCACCGTCGCCGCCGTGAAGGCGGCCGGCGTATGGACGACGACGGCGGCGGCGATCACCGGGATTTCGTGGACGTGTTGCTCGACGTGAACGAGACGGACAAGGACGCTGGCATTCAGCTCGGCACCGTCGAAATCAAGGCTATTATCATGGACATGTTTGTAGGGGGCTCAGACACTACGACCACGATGATGGCATGGACCATGGCCGAGCTGATCAACCACCCACGCGCCATGCGCAAAGCGCAGAACGAGATCTGGGCAGTCGTGGGCAACACTAGTCATGTCACCAAGGACCACGTGGACAAGCTGCCCTACCTCAAGGCTGTTTTCAAGGAGACGCTCCGGCTACACCCACCACTCCCGCTCCTCATCCCACGAGAGCCACCGGCGGACACCCAGATCCTGGGTTACACCATACCAGCGCACACGCGGGTGGTGATCAACGCGTGGGCCATCGGCCGAGACGCGGCAGCATGGGGGCAGCAACCGGACGAGTTCTCACCGGAGAAATTCCTCAACAGCACCATTGACTACAAGGGACAGGACTTCGAGCTGCTACCATTTGGCGCCGGTAGGAGGGGGTGCCCCGGGATCGTGTTCGGGGTGTCAGCCATGGAGATAGCACTCGCGAGCTTGCTCTACCATTTTGACTGGGAGGCGGCGGCAACTGATCACAGGAGGAGGGGCAGCCAAGCATGGGCGTTGCCAGTAGACATGAGTGAGGTCAATGGGATAGCTGTTCATCTCAAGTATGGTCTACATGTCGTCGCTAAACCACGTATGCCTTAA
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| Protein seq | MAVSLLPAVLVLLAIVAPLLYLVLLPAVKYTTRNGAARWEDDGGDGRRRRRLPPSPRGLPLLGHLHLLGALPHRALRSLAAAHGPVLLLRLGRVPVVVVSSAAAAEEVMRSRDMEFASRPRMAMAELLLYGGRDVAFAPYGEYWRQARRICVVHLLSARRVLSFRRVREEEAAALVGRVRAAAADVVVDLSDLLIAYSNTVLTRIAFGDESARGGGGGGDRGRELRKVFDDFARLLGTEPMGELLPWFWWVDALRGIDGKVQRTFEALDGILERVIDDHRRRREGGRRMDDDGGGDHRDFVDVLLDVNETDKDAGIQLGTVEIKAIIMDMFVGGSDTTTTMMAWTMAELINHPRAMRKAQNEIWAVVGNTSHVTKDHVDKLPYLKAVFKETLRLHPPLPLLIPREPPADTQILGYTIPAHTRVVINAWAIGRDAAAWGQQPDEFSPEKFLNSTIDYKGQDFELLPFGAGRRGCPGIVFGVSAMEIALASLLYHFDWEAAATDHRRRGSQAWALPVDMSEVNGIAVHLKYGLHVVAKPRMP |
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| Function | Cytochrome P450 71A26 [UniProtKB/Swiss-Prot:Q9STK7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g12770 | LOC_Os01g12770.1 | Chr01 | 7071481 | 7073789 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCCGTCTCACTCCTCCCCGCCGTCCTTGTACTCCTCGCCATCGTCGCGCCGCTCCTGTACCTCGTGCTGCTTCCCGCCGTGAAGTACACGACGAGAAATGGCGCTGCGAGGTGGGAGGACGACGGCGGTGATGGCCGGCGCCGCCGGAGGCTGCCGCCGTCGCCGCGGGGGCTCCCGCTGCTCGGCCACCTCCACCTGCTCGGCGCGCTGCCGCACCGGGCACTGCGGTCCCTCGCCGCGGCGCACGGCCCGGTGCTGCTGCTGCGGCTCGGCCGCGTTCCCGTGGTGGTCGTGTCGTCGGCGGCCGCGGCCGAGGAGGTGATGCGGTCGCGGGACATGGAGTTCGCGAGCCGGCCCAGGATGGCCATGGCCGAGCTGCTGCTCTACGGCGGCCGCGACGTCGCGTTCGCGCCCTACGGCGAGTACTGGCGCCAGGCGCGCCGCATCTGCGTGGTCCACCTCCTCAGCGCGCGCCGCGTCCTCTCGTTCCGCCGCGTCAGGGAGGAGGAGGCCGCCGCGCTCGTCGGCCGCGTCCGCGCCGCCGCCGCCGACGTCGTCGTCGACCTGTCCGACCTCCTCATCGCTTACTCCAACACCGTCTTGACGCGCATCGCGTTCGGCGACGAGAGCGCGCGCGGCGGCGGCGGCGGCGGCGACAGGGGGCGCGAGCTGAGGAAGGTGTTCGACGACTTCGCGAGGTTGCTCGGGACGGAGCCGATGGGGGAGCTCTTGCCATGGTTCTGGTGGGTGGACGCCTTGAGGGGGATAGACGGGAAGGTGCAGCGCACGTTTGAGGCGCTGGACGGCATCCTCGAGAGGGTGATCGACGATCACCGTCGCCGCCGTGAAGGCGGCCGGCGTATGGACGACGACGGCGGCGGCGATCACCGGGATTTCGTGGACGTGTTGCTCGACGTGAACGAGACGGACAAGGACGCTGGCATTCAGCTCGGCACCGTCGAAATCAAGGCTATTATCATGGACATGTTTGTAGGGGGCTCAGACACTACGACCACGATGATGGCATGGACCATGGCCGAGCTGATCAACCACCCACGCGCCATGCGCAAAGCGCAGAACGAGATCTGGGCAGTCGTGGGCAACACTAGTCATGTCACCAAGGACCACGTGGACAAGCTGCCCTACCTCAAGGCTGTTTTCAAGGAGACGCTCCGGCTACACCCACCACTCCCGCTCCTCATCCCACGAGAGCCACCGGCGGACACCCAGATCCTGGGTTACACCATACCAGCGCACACGCGGGTGGTGATCAACGCGTGGGCCATCGGCCGAGACGCGGCAGCATGGGGGCAGCAACCGGACGAGTTCTCACCGGAGAAATTCCTCAACAGCACCATTGACTACAAGGGACAGGACTTCGAGCTGCTACCATTTGGCGCCGGTAGGAGGGGGTGCCCCGGGATCGTGTTCGGGGTGTCAGCCATGGAGATAGCACTCGCGAGCTTGCTCTACCATTTTGACTGGGAGGCGGCGGCAACTGATCACAGGAGGAGGGGCAGCCAAGCATGGGCGTTGCCAGTAGACATGAGTGAGGTCAATGGGATAGCTGTTCATCTCAAGTATGGTCTACATGTCGTCGCTAAACCACGTATGCCTTAA
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| Protein seq | MAVSLLPAVLVLLAIVAPLLYLVLLPAVKYTTRNGAARWEDDGGDGRRRRRLPPSPRGLPLLGHLHLLGALPHRALRSLAAAHGPVLLLRLGRVPVVVVSSAAAAEEVMRSRDMEFASRPRMAMAELLLYGGRDVAFAPYGEYWRQARRICVVHLLSARRVLSFRRVREEEAAALVGRVRAAAADVVVDLSDLLIAYSNTVLTRIAFGDESARGGGGGGDRGRELRKVFDDFARLLGTEPMGELLPWFWWVDALRGIDGKVQRTFEALDGILERVIDDHRRRREGGRRMDDDGGGDHRDFVDVLLDVNETDKDAGIQLGTVEIKAIIMDMFVGGSDTTTTMMAWTMAELINHPRAMRKAQNEIWAVVGNTSHVTKDHVDKLPYLKAVFKETLRLHPPLPLLIPREPPADTQILGYTIPAHTRVVINAWAIGRDAAAWGQQPDEFSPEKFLNSTIDYKGQDFELLPFGAGRRGCPGIVFGVSAMEIALASLLYHFDWEAAATDHRRRGSQAWALPVDMSEVNGIAVHLKYGLHVVAKPRMP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.666985 | 2.363968 | 0.758547 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0227800 | RBH | 2.465493 | 3.515313 | 2.946192 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g12760 | RBH | 0.0 | 0.0 | 0.265602 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0227800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0009150 | SBH | 0.381645 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0008800 | SBH | 0.374200 | 0.0 | 2.232614 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0009160 | SBH | 0.699528 | 0.0 | 1.015152 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0008690 | SBH | 0.121134 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0008760 | RBH | 13.217168 | 0.452093 | 2.263297 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0115200 | RBH | 4.551184 | 0.5310895 | 0.176884 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0008740 | RBH | 0.539556 | 0.000000 | 0.273021 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0115000 | RBH | 4.3759025 | 2.2542725 | 0.011638 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0008600 | RBH | 0.239537 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0008790 | RBH | 0.316430 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0008740 | RBH | 2.980054 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0008810 | RBH | 1.513962 | 0.0 | 1.031180 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0008630 | RBH | 0.613575 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G008780 | RBH | 0.610610 | 0.0 | 0.584088 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0008660 | RBH | 0.464144 | 0.0 | 2.369665 |
