Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g05720 | OGI:02047340 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:2728135-2730972 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCAGCGGATGGTTCAATGGTGCGGAGGCTCTACCTCTCTATCTACAATTGGGTCGCCTTCATCGGATGGTCAGTTCAACTGCCTACTGTTTGTTGAGTTTCTGGATGGATATCGATTTTTTATTTTGAGTTTCATATATTGATATAGCAGGAGAAAAATACAAATCTATAGTCAGGAAAGAAAAACAACCACACCACGCGTCTACAATAACACACTGCCGCGAGAGTGAAAACATTGCCCTCTAGCATCTTTGTTTGCTGGCCATTTCATGGGCTGGACAGCCAGGGTGTTGTTTTTTATCGGGGTTCTGAATTTGATTTGGATCAATGCAGGGCTCAGGTGTTGTGCTACATGACCTTGGCATTGCTGGATAAGGGACATGAGGCCGTCTATGCTGCCATCGAGCGACCTCTGCTGTTCACGCAGACTGCTGCCATCTTGGAGGTCCTGGTTTTTCCTAGTTCTTTACCTTTATTTATCAGGGAGAATTGGAGATTGAGAGGTGTGCTAAAATTTTTTTGTGTTCTGTTGTTTGCCTGATGATGTTGTTGCTGGTGGTACAGATTCTTCATTCCATTGTAGGTGAGAAATCTTTTTTTCTTTTCCTTCGTTGAAAAGAGACTTGTTTTTTCCCCCTTCTCTGAATGTTGTTTTTTGTCATCTTTGCCAACTGAGAAGTGTAGTTTCCTGCTTGGTATGTCTGTCCTGTGCAAACTTTATGGAAACAGGCTTCCAACCCTTAATCTGGATTGTAGAGCATACTGATATGTTCAATGCCTAGATGACAAAACTTCAACATGGGCTACCGCATTCTATTATTATTATTTTTAAAATTGTACTACAAAAGAAAGGGACTAAAAAGGATTTCTGATTGAGCCTAAAAGGCTAATTACCATCTGGTAGCTCTTCATTGTTAGGCGGCCTAAGGTTTACTACCTTGATGTTGTGTTTTAGTTGTTCATGCTGAATTAGATCGTGGTAGATGGTAAGTTCTGGTATGTGCACGATAAAAGATATGCTGTAATTTTGGTGAATGTGTCTACTTTCACATTTGTGCAGTATAATATGTAGCTCAGCTTACCTCTAGCCTCCTTTTCAATCATTTGAGATCATTATGATACAAGCAATAATCTAGAATTTGAATAAAATCAAGAGAAGCCTCAACTTTGAGAAGATCATATTGTTAGCTTCTTCCTAGGAGAGAAAGGAAATGTCCTATTAGACACAATTATTTACCCCAAAAAATATTGCTTATCACTGTAATCTGAATTGTTGAAAAGGGTTGGTGAGGTCTCCAGTGTCTTCTACTCTCCCACAAATTACTGGAAGGTTGTTCATTACCTGGGGCATCTTGTGGAGCTTCCCTGAGGTAATATCAGGACCTTACTCCAAGTTATTAGATAGTTTTTATCTTAAAAACAAGTCCTGGACTAGAAAGCACTTCTTAAAATAATAAAACATACTATCTTTTCAGGTTATAAGACTTTCTAGCACTGCCCACATGTGTCTAGATTCATTAACATCTATATGAATGTGGGCAATATGTCTAGATTCATTAACATCTATATGAATGTGGGCAATGCTAGAAAGTTTTATAATATGAAAAGGGGGAAGTAGATGTTAGGTGATGTTGCAGCTATTAGAAATATCCATACTTTCATTTATGATCATAATCCTCTGAGTAAGCATTGGACAAACCAAAGCGGCAGAAATGGCATAAGTAATAAAGCTGATGCAACTACATCGTGGAAAAGGATAAAACAGTGCTCTTTCCTTCTGCGTCCTACTTTCCTACTTCCTATATTTTAACTTCTATAATCAAGTAATTGTTTTGTTTATGAACAATATCGGTGAATCACTGTCCACATATGTTTTGCAGACACAGTCTTATATTTTTGTTACCTCCTTGCTCATATGCTGGTGCATCATTGAGGTATATGTTACTCCCTAAAACTTTTCACCAAATTACTCGCTTGGAAGACGATGAGTTTCAGATGAAATTTTATTATAAGATGATAAGGAATAATTCTGCTTCTTGAAATGACAGTAGTTGTTGAAGTTCCTGAAAGAAAATCCCAAGCTTTTGGAAGTTCCTGTGTTGAGCTTAGTTGAACAAGTATTATGAAATTTTCTTCACTTCAGAGAATGAAGTGAATTACTGATTCCTTGCAGGTTACCAGATATTCTTTCTATGGCATGAAGGAGTCATTTGGATTTACACCTTCCTGGCTCTTATGGCTTAGGTTGGTTCTGGTTGTAAACAAACCATACTAATATGTAGCATAAACTTCAAATGAAACTCATTATCTGATCATTGAATTCTCTTAAAAGTAATTCTTATTATTTTCGTACTGATTTCTTCGCAGGTACAGCACCTTCATAGCATGCTTTCCTGTTGGTGTGGTTAGTGAGATTTGCCTAGCCTACACTGTTCTTCCTTTCATGAAGGTAACTTTGAATAACTTAGAAAGGAAGAGCTCCGGTTGCATTTGATAACAATCTTGTTCAAATGCTCTTTTCTTTTGCATGAGCAATATCAGGCGTCTGAGAAATACTGCCTTAGGATGCCCAACAAATGGAATTTCTCCTTCAACTACTTCTATGCCAATGTCTTTTTCATGGCTTTTTATGTCCCAGGTAGTATTTTATTTCCTGCAATTGTACTTCATTTAGTAATTGATGATATAATCAAGTATCTTTTTTTTTTAAAAAAAAACTAGGATTTGACGGCACACTGCCTTGCTGTTTCATTTCATGAATGCAGTGGTTCCATACTTGTTTCACCATATGATCGCCCAGCGGAAGAAGGCCTTGTCAAAGGCAAAAACCACATAA
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| CDS seq | ATGGCAGCGGATGGTTCAATGGTGCGGAGGCTCTACCTCTCTATCTACAATTGGGTCGCCTTCATCGGATGGGCTCAGGTGTTGTGCTACATGACCTTGGCATTGCTGGATAAGGGACATGAGGCCGTCTATGCTGCCATCGAGCGACCTCTGCTGTTCACGCAGACTGCTGCCATCTTGGAGGTCCTGGTTTTTCCTAGTTCTTTACCTTTATTTATCAGGGAGAATTGGAGATTGAGAGGGTTGGTGAGGTCTCCAGTGTCTTCTACTCTCCCACAAATTACTGGAAGGTTGTTCATTACCTGGGGCATCTTGTGGAGCTTCCCTGAGACACAGTCTTATATTTTTGTTACCTCCTTGCTCATATGCTGGTGCATCATTGAGGTTACCAGATATTCTTTCTATGGCATGAAGGAGTCATTTGGATTTACACCTTCCTGGCTCTTATGGCTTAGGTACAGCACCTTCATAGCATGCTTTCCTGTTGGTGTGGTTAGTGAGATTTGCCTAGCCTACACTGTTCTTCCTTTCATGAAGGCGTCTGAGAAATACTGCCTTAGGATGCCCAACAAATGGAATTTCTCCTTCAACTACTTCTATGCCAATGTCTTTTTCATGGCTTTTTATGTCCCAGTGGTTCCATACTTGTTTCACCATATGATCGCCCAGCGGAAGAAGGCCTTGTCAAAGGCAAAAACCACATAA
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| Protein seq | MAADGSMVRRLYLSIYNWVAFIGWAQVLCYMTLALLDKGHEAVYAAIERPLLFTQTAAILEVLVFPSSLPLFIRENWRLRGLVRSPVSSTLPQITGRLFITWGILWSFPETQSYIFVTSLLICWCIIEVTRYSFYGMKESFGFTPSWLLWLRYSTFIACFPVGVVSEICLAYTVLPFMKASEKYCLRMPNKWNFSFNYFYANVFFMAFYVPVVPYLFHHMIAQRKKALSKAKTT |
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| Function | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A [UniProtKB/Swiss-Prot:Q7XSZ4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g05720 | LOC_Os01g05720.1 | Chr01 | 2728135 | 2730972 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCAGCGGATGGTTCAATGGTGCGGAGGCTCTACCTCTCTATCTACAATTGGGTCGCCTTCATCGGATGGGCTCAGGTGTTGTGCTACATGACCTTGGCATTGCTGGATAAGGGACATGAGGCCGTCTATGCTGCCATCGAGCGACCTCTGCTGTTCACGCAGACTGCTGCCATCTTGGAGGTCCTGGTTTTTCCTAGTTCTTTACCTTTATTTATCAGGGAGAATTGGAGATTGAGAGGGTTGGTGAGGTCTCCAGTGTCTTCTACTCTCCCACAAATTACTGGAAGGTTGTTCATTACCTGGGGCATCTTGTGGAGCTTCCCTGAGACACAGTCTTATATTTTTGTTACCTCCTTGCTCATATGCTGGTGCATCATTGAGGTTACCAGATATTCTTTCTATGGCATGAAGGAGTCATTTGGATTTACACCTTCCTGGCTCTTATGGCTTAGGTACAGCACCTTCATAGCATGCTTTCCTGTTGGTGTGGTTAGTGAGATTTGCCTAGCCTACACTGTTCTTCCTTTCATGAAGGCGTCTGAGAAATACTGCCTTAGGATGCCCAACAAATGGAATTTCTCCTTCAACTACTTCTATGCCAATGTCTTTTTCATGGCTTTTTATGTCCCAGTGGTTCCATACTTGTTTCACCATATGATCGCCCAGCGGAAGAAGGCCTTGTCAAAGGCAAAAACCACATAA
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| Protein seq | MAADGSMVRRLYLSIYNWVAFIGWAQVLCYMTLALLDKGHEAVYAAIERPLLFTQTAAILEVLVFPSSLPLFIRENWRLRGLVRSPVSSTLPQITGRLFITWGILWSFPETQSYIFVTSLLICWCIIEVTRYSFYGMKESFGFTPSWLLWLRYSTFIACFPVGVVSEICLAYTVLPFMKASEKYCLRMPNKWNFSFNYFYANVFFMAFYVPVVPYLFHHMIAQRKKALSKAKTT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0150800 | SBH | 0.248134 | 0.0 | 1.052662 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g05744 | RBH | 0.209484 | 0.0 | 0.114189 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0150800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0003650 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0003490 | SBH | 0.049562 | 0.000000 | 0.509663 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0003630 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0003310 | SBH | 0.0 | 0.644466 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0003530 | SBH | 0.000000 | 0.000000 | 1.941574 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0046700 | SBH | 9.59436 | 7.9674395 | 9.0453085 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0003450 | RBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0048500 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0003270 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0003370 | SBH | 0.071359 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0003510 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0003540 | SBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0003420 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G003590 | SBH | 0.159704 | 15.418100 | 3.234962 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0003440 | SBH | 1.011356 | 78.888649 | 9.556228 |
