Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g04550 | OGI:01002250 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:2036118-2038198 | ||||||||
| Gene Symbol | RLCK23, OsRLCK23 | ||||||||||
| DNA seq | TTAAGTTTCACAAGGAACGCAATGAAATAGAGGAGTTGTTCTCCACATAGAATGTTCATCCAGACAAGATGACCTACGTAATTGTTAATTATCCCTTGTATCAAACCTAGGATTTATCGTTCAAAGGATTAGTTCACTAACTTGAAGATATGTATAGATCATCTAAAGAATGTGAACTTCCAACGTGATACTTCATTTGTTTTGGGACAATATCAAATGTTCTACTATATTACTTTTGTTAATTAAGTTCGTGGTTATTGCAGGAACCAAGAAAACTGGCAGGAAGATCATACTAATAGGTATGTTAAAAACATTTACCATTGAATCAGAAGCCATAATAACCTAAAATATTACGCAAACACATATCCTTAATTTGTGTAATCTTATAAATGACTGGTTGATTTGGATAAAATATAGAAGCCCTTTTACCTTGTTTGTAGCTTTTGTCACCTTGCACTTTTTTTAGATTAATAGGAAAAGCTAATGATGTTCATGCAAATTAAATGGCCATGATATACCATTATGATCTTGTAAAAGGAAATAACATGAGTTTTAATCTCAGTTTTGACAGCAGCAGCAGCAGGCTTGCTCTTACCATGTCTATATGTGCTGATATGGCATAGGAAGGGGAAAAAACTACGGCATCTCCTTTGCACAAAGACTAGCAGCACCAGTGAAAGGAACATTGAGGCCCTCATAGAATCTTATGGATCCATAGCTCCAACAAGATACAAGTATTCAGAGGTAACAAAGATAACATCATTTCTTAATTATAAGCTTGGAGAAGGAGGTTATGGTGTCGTATTCAAAGGAAGGTTACAAGATGGTCGTATGGTTGCTGTGAAATTCTTGCATGACTCAAAAGGAAATGGAGAGGAGTTTGTGAATGAGGTTATGAGCATTGGCAGGACCTCTCATATTAATATCGTTAGCTTATTTGGGTTTTGTTTGGAGGGCTCAAAACGAGCTCTTGTTTATGAGTACATGCCCAATGGTTCTTTGGACAACTATATTTATTCAGAAAATCCCAAAGAAATTCTAGGGTGGGAAAAACTTTACGGAATTGCAATCAGGGTTGCCCGTGGGCTAGAATACTTGCACCATAGTTGTAACACACGAATCATCCATTTCGATATAAAGCCTCAAAACATCCTTCTAGACCAGGATTTTTGCCCAAAGATTGCTGATTTTGGTTTAGCCAAACTGTGCCGTACCAAGGAGAGCAAGCTTTCAATGACAGGTGCTAGAGGAACAATTGGATTCATCGCTCCTGAAGTTATCTATCGAACCTTTGGAGTTGTTTCAACAAAGTCAGATGTTTACAGTTATGGAATGATGCTGCTAGAGATGGTCGGAGGCCGGAAAAATGCGAAACAAATGGTTGAAAATTCAAGTGAAAAGTATTTTCCAGATTGGATTTATGATCACTTTGCTCTGGATGACGGATTACAAGCTTGTCAAGTCACAAGTGAGGTTGAGCAAATTGCCAAAAAGATGACTTTAATTGGTTTGTGGTGTGTACAAGTATTACCTATGCATCGACCAACAATAACCCAGGTTTTAGATATGTTCGAGAGAGGTTTGGATGAACTGGAAATGCCACCAAAACAAAATTTCAGTGAATTACTGTAAGACACTTTCTCTACACATTTTTATGTGGACTGGTAATATTTTCAGTGAAGTTCATCTATGCTATTTCTGTTTTTCAGAGACCATTCAGTTCATGAGCTGAATACAGAAAGTAAGAGTTCTACTGGAAATACCAAAGCTGCACAAGCTTAGTGGAGTGCTAAAGGTTGAGGAGACAAGCCTCGTGAATTCAAAAGACCCTACAGTGACTACCAACTATGCAACAAGATGATCTGCAGTATACAGAAAGTAAGACACAAGTCAAATTTTGGTATTGTATCATCACACATTCATGGCATTGCCTAGTGTAGTAGTGTCTTTAAGGGAGCTGAATCGAAGATATTTCTGAATTCCGTTTATCCCCCCCTAATTGCTTCATAAGCAATTCAACAATTTGATCAATCCATGGCTACGATTTAGAGCTAAGTGCCAAAATTATCACATTTTCCTCG
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| CDS seq | ATGGTTGCTGTGAAATTCTTGCATGACTCAAAAGGAAATGGAGAGGAGTTTGTGAATGAGGTTATGAGCATTGGCAGGACCTCTCATATTAATATCGTTAGCTTATTTGGGTTTTGTTTGGAGGGCTCAAAACGAGCTCTTGTTTATGAGTACATGCCCAATGGTTCTTTGGACAACTATATTTATTCAGAAAATCCCAAAGAAATTCTAGGGTGGGAAAAACTTTACGGAATTGCAATCAGGGTTGCCCGTGGGCTAGAATACTTGCACCATAGTTGTAACACACGAATCATCCATTTCGATATAAAGCCTCAAAACATCCTTCTAGACCAGGATTTTTGCCCAAAGATTGCTGATTTTGGTTTAGCCAAACTGTGCCGTACCAAGGAGAGCAAGCTTTCAATGACAGGTGCTAGAGGAACAATTGGATTCATCGCTCCTGAAGTTATCTATCGAACCTTTGGAGTTGTTTCAACAAAGTCAGATGTTTACAGTTATGGAATGATGCTGCTAGAGATGGTCGGAGGCCGGAAAAATGCGAAACAAATGGTTGAAAATTCAAGTGAAAAGTATTTTCCAGATTGGATTTATGATCACTTTGCTCTGGATGACGGATTACAAGCTTGTCAAGTCACAAGTGAGGTTGAGCAAATTGCCAAAAAGATGACTTTAATTGGTTTGTGGTGTGTACAAGTATTACCTATGCATCGACCAACAATAACCCAGGTTTTAGATATGTTCGAGAGAGGTTTGGATGAACTGGAAATGCCACCAAAACAAAATTTCAGTGAATTACTAGACCATTCAGTTCATGAGCTGAATACAGAAAGTAAGAGTTCTACTGGAAATACCAAAGCTGCACAAGCTTAG
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| Protein seq | MVAVKFLHDSKGNGEEFVNEVMSIGRTSHINIVSLFGFCLEGSKRALVYEYMPNGSLDNYIYSENPKEILGWEKLYGIAIRVARGLEYLHHSCNTRIIHFDIKPQNILLDQDFCPKIADFGLAKLCRTKESKLSMTGARGTIGFIAPEVIYRTFGVVSTKSDVYSYGMMLLEMVGGRKNAKQMVENSSEKYFPDWIYDHFALDDGLQACQVTSEVEQIAKKMTLIGLWCVQVLPMHRPTITQVLDMFERGLDELEMPPKQNFSELLDHSVHELNTESKSSTGNTKAAQA |
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| Function | Protein SUPPRESSOR OF NPR1-1 CONSTITUTIVE 4 [UniProtKB/Swiss-Prot:D7SFH9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g04550 | LOC_Os01g04550.1 | Chr01 | 2036118 | 2038198 | + | MSU_osa1r7 | ||
| CDS seq | ATGGTTGCTGTGAAATTCTTGCATGACTCAAAAGGAAATGGAGAGGAGTTTGTGAATGAGGTTATGAGCATTGGCAGGACCTCTCATATTAATATCGTTAGCTTATTTGGGTTTTGTTTGGAGGGCTCAAAACGAGCTCTTGTTTATGAGTACATGCCCAATGGTTCTTTGGACAACTATATTTATTCAGAAAATCCCAAAGAAATTCTAGGGTGGGAAAAACTTTACGGAATTGCAATCAGGGTTGCCCGTGGGCTAGAATACTTGCACCATAGTTGTAACACACGAATCATCCATTTCGATATAAAGCCTCAAAACATCCTTCTAGACCAGGATTTTTGCCCAAAGATTGCTGATTTTGGTTTAGCCAAACTGTGCCGTACCAAGGAGAGCAAGCTTTCAATGACAGGTGCTAGAGGAACAATTGGATTCATCGCTCCTGAAGTTATCTATCGAACCTTTGGAGTTGTTTCAACAAAGTCAGATGTTTACAGTTATGGAATGATGCTGCTAGAGATGGTCGGAGGCCGGAAAAATGCGAAACAAATGGTTGAAAATTCAAGTGAAAAGTATTTTCCAGATTGGATTTATGATCACTTTGCTCTGGATGACGGATTACAAGCTTGTCAAGTCACAAGTGAGGTTGAGCAAATTGCCAAAAAGATGACTTTAATTGGTTTGTGGTGTGTACAAGTATTACCTATGCATCGACCAACAATAACCCAGGTTTTAGATATGTTCGAGAGAGGTTTGGATGAACTGGAAATGCCACCAAAACAAAATTTCAGTGAATTACTAGACCATTCAGTTCATGAGCTGAATACAGAAAGTAAGAGTTCTACTGGAAATACCAAAGCTGCACAAGCTTAG
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| Protein seq | MVAVKFLHDSKGNGEEFVNEVMSIGRTSHINIVSLFGFCLEGSKRALVYEYMPNGSLDNYIYSENPKEILGWEKLYGIAIRVARGLEYLHHSCNTRIIHFDIKPQNILLDQDFCPKIADFGLAKLCRTKESKLSMTGARGTIGFIAPEVIYRTFGVVSTKSDVYSYGMMLLEMVGGRKNAKQMVENSSEKYFPDWIYDHFALDDGLQACQVTSEVEQIAKKMTLIGLWCVQVLPMHRPTITQVLDMFERGLDELEMPPKQNFSELLDHSVHELNTESKSSTGNTKAAQA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.179368 | 0.323679 | 0.128419 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0137950 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g04570 | RBH | 0.073249 | 0.186777 | 0.068148 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0137950 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0002670 | SBH | 0.000000 | 0.657511 | 0.237838 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0002540 | SBH | 0.038586 | 0.000000 | 0.469836 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0002680 | RBH | 0.053964 | 0.0 | 0.464416 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0002550 | RBH | 0.071853 | 0.034780 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0002650 | RBH | 0.000000 | 4.420455 | 0.969946 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0034000 | RBH | 0.461777 | 1.019504 | 0.7308405 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0002580 | RBH | 0.105404 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0015200 | SBH | 1.617323 | 0.890693 | 1.779883 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0002430 | RBH | 0.031298 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0002560 | RBH | 0.075790 | 0.585201 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0002670 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0002710 | RBH | 0.0 | 0.000000 | 0.056105 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0002540 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G002770 | RBH | 0.0 | 0.902375 | 0.522365 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0002580 | RBH | 0.259614 | 0.0 | 0.677685 |
