Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsY3551G1125153400.01 OGI:01044490 | 50/50 Os XI-1B: Y3551 | Y3551 | SICAU Chr11:12991332-12997706
Gene Symbol -
Mutant -
Stuctural Variations

CN1_Y3551_INV1119660,02428_Y3551_DEL1117500,02428_Y3551_INS1117490,02428_Y3551_INV1116980,G46_Y3551_INV1115680,Azucena_Y3551_DEL1122580,Azucena_Y3551_INS1122590,Kosh_Y3551_INS1135380,R9311_Y3551_INV1103270,KY131_Y3551_INS1138670,Nipponbare_Y3551_INS1137490,FH838_Y3551_INV1118730_20,132278_Y3551_DEL1120250,132278_Y3551_INS1120240,132278_Y3551_INV1119350,Basmati1_Y3551_DEL1121980,Basmati1_Y3551_INS1121990,NamRoo_Y3551_INS1139710,ZH11_Y3551_DEL1120220,ZH11_Y3551_INS1120210,ZH11_Y3551_INV1119690,D62_Y3551_DEL1115270,D62_Y3551_INS1115260,D62_Y3551_INV1114740,FS32_Y3551_DEL1115820,FS32_Y3551_INS1115810,DHX2_Y3551_DEL1118510,DHX2_Y3551_INS1118500,MH63RS3_Y3551_INV1102890,127742_Y3551_INV1105100,117425_Y3551_DEL1119770,117425_Y3551_INS1119780,OglaRS2_Y3551_INS1147040,117534_Y3551_INV1116990,YX1_Y3551_INV1106480,127518_Y3551_INS1131340,Lemont_Y3551_DEL1122740,Lemont_Y3551_INS1122730,Lemont_Y3551_INV1121940,S548_Y3551_INV1105730,R498_Y3551_INV1103970,G8_Y3551_INV1111440,II32_Y3551_DEL1120490,II32_Y3551_DEL1120510,LJ_Y3551_INS1138480,128077_Y3551_DEL1121540,128077_Y3551_INS1121530,128077_Y3551_INV1121270,

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DNA seq

GAGGTTAATCGGTGTCTGCATCAGTAGCTACATATGGAAGTGCCATAATAGAGTGATAAGTGCAGTGCCCACAGCGTGTCTATAGTGCACAGGGGTAACGATTATAACATGGGCAGTATATTACATAAACAGCAGACTGTATGGAGACACCGAGCTTTGCCGCTAACAAAAGCATGAGATCAGACTACATTGATAGCATATTCAGAAGATATCGACGGTTGCTCCTCGATGGGTAGTCTTAAAAATGGAAAATGCATACTGTGTGGAGCTTTATGCCATTGTTGAGGGCGAAATTTGTCCATCTGTTTTTTAGGTTGCAACGATGGTCTGTCGATCTGTGAAGGATCATGCTGGTTGAAGGGCTCCCAGTATCTGCGCTTAGATATCATCTGCAAACTTGGGTTTGGTGTTCGCTGCAAGAAAGTATTCTATAAGCATTTTCAATGCGTATGAAAGAAACCAGCTATTAATACTATAGAAAATGACAATGTGGAATGGTTCGATTTGTAGAAGTGCCTCTGGTATTTCTTGTATGGTGTATCTTAACATGGAGTGAGAATAGATGCATCAGCACTAAAATAAGAAGGTAAATATATTTTAGGCGGTAGTGTGCTTAGGTCCTGAAGATAGGACCAAAATTAATGCGAGTGGATCAGTTGTGGAGCGGTGTGGTTCAAAGTAAGAACAGTAACATAGGCTGATGACCGGTGTTATAATAAACGCAAATTTGTTTATTGATCCACATGATGAAGATCAGCTAAGGTGCCTAGAGCATTACACAGATGGAAAGATAGCCATCTGATGGAATCAAAGGCGGAGCATACATGCATAGACAGGTATAGAACTGCAGAAGTGGTATGATAGGTTGATCTGTACGATTAAAAGATAGCGTTGTTGCGTGGCGTCATGTTATTTGCACGAACCGAAATTTCGTTAGGATTAAAAGAGGAGCGTAATTGAAAGTAAAGACATGGATAGTGAGTTGACCTGATTTGTTGATCCTGTGATTGATAGGAGACGATGACTCTGGACCATGACTGGATGAATGGCCTGAAATAGAAATATGGAGCATGCTAGTAAGTAAAGTGTTATCCTAAATGATACGGAGTATGGTGTAACTAATGGAATAGATGAGTTCCTAGCTAACTGGTTCGAGATTACAATCATATTATTTCTGATGAAAGGTGTTTGTGTGATACGAATACCTTTGCTGTTTTGGTGTATAGACCTTTTTGCTTTGAACCTGAGGTGTTCTTCTGATGAAGCAGGCATGGGAAGCTTGGGAACTCCATGCTTGTCAAGTATGAGGAGATCAAGTGTTGATGGAGAAGAAACACTGAATCTAATACATTGTCCAACGCGTAAGCCAGTAAGCTCAACAAATTTTTTCCAACCTTTGCAGATATAGAATGACTGGCCTCTTTTTTCGAGCCTAACATTCACTGGTTTGTTATGGCGTGTGACCAAGGTTAAATATTTTCCATGGTATCCATTGCAGCTGGCTACAATCTCAGGTGGGAGAGCCTATAAAAAATTCCCCCATTAGTAACAGATAGGATATTACGTTGATGCAGGCTTGGAAGGTATTTGTGTGTACTTACAAAATCTTCTTCATCTAACTGGGTGAATCTCAGCATAGCAGATGTTCGAGCCATCATAGAGAAGCTGGAATATAGGTTGTTTGTATGTCAGTGGTTGAACAAAGCTTTGCTCTTTTAGAATGGAGACAGATCTAAAATCAGAGGTGGTATTACTGTAGGTGCATATAAAAACCAATTGTTTTTGGTGAAAGCAAAATATGTACAACGTAAGATAGTAAGCTATATGATAAGACGATAAAAGAGTGGTTTCTAGTGCTCTAATAAGATATAGTAAGAATATAACAAGATGATAATGGTAAGAATAAAATTACACAATAAAGAGGAGCAAATAATGGTGCACAATAAATACAGCATTTAATATTGCCTTTTAAAGAAATATGGAATTTTTTTGTATTCGGAACTGTTTTCTATTCCTAAAGAGATATGGCAACATTTAGTATTTACCACTGTGATGGTATAATACCAGCGGTGCAGGTGCAGAAGGTATTCCCAAATGCTGATGGAGTGGAAACTATAGTGTTGCATGGATCCATGAGCATCCATGCAACTCTATCCACCTAAAATGGAACACATGATCTAAAAGTAGGCTGAGGGCTATAAACTGTACTTCAAAGTGGACTAATATAGCTTCTGTGTGTGAGCAAGGCCACATCAATTATTGTTACTGCTGTACCATCGGTATAAAATTAGAAGTTTGCATGGATCATTTTGAAATCAAATAACTTTCTAGCCTTCTCAAACTCGGTTCCATGAAAGCTCAAAAGAAAGGAAGAGTGTATCTAACTGTATATGCACAATTTAGGAAATTAGCTAGGAAACACAAAGGGACCGAAAAAATGTACAGCTGATTCCATATAAAAATATAGATATATGGGTACATCACCTGGTAGAGAAAGACGTGCGCGCAGCGATTCCAAGGCCCAAGAATAGAAGTTGTTTTACATCCTGTGCCATAAAAAGCAAAAGTTATAATTTACCCGTAAATTAAAAGGCAAGAATACAAAAGAGGAAAAAGAAGAATAACAAACTATAGTTGCGTTAACATCAGAGACTATGAGGTAGGGTTCTCATCTATAGCTCTGATCCGAGAATGGTGGATCTGTAAGTGAGAAAAGAAAAGAGAGGTATTGCAGAGATAGCTTAAGAAGCGATCTATTAGGGTTGACTACTGATTTTGGCCGTGCTGCTATGGGTATTGTGGCTCTAAGGAAAATAAAACGATGGATCCGCGCGGACAGATCTGCTGACACAGCGACGGTGCTCAGGAATGCCTCGTCTCCCAATCCTACGTGTTGCTGCCCCGTTCTTGATATCATCCTTCTCCTACCCTCTGTTTTCCCTAGCACTGAGGCCACGCGCCGCTGGTCCGCGCATTCGCCTCACACTGGCGTGGTCATTGCCGTTGCCGTGGTCGCGTCCACCTCCGCCGCGGCGGCCGCATCTACCTGCCCTAAAAAACCCTAGCTGGGACCGTCCATTACCCTGCTAAGGGATAAGTTTACGTGATTCCCTAAACATGTGCGGTCTATCTTGTAGAAAGATCCATGAGGCATCTCGTTGTTTACCATGTTTAAACTAACCTTTACGGCTTTACCTTGACAACAGGCTTTGCAAATGGTTTTGAATAGCAGCCATCAGGTGGGTGACCTTGTTAAGAATCGAAGCCATAACTGAAAATGATTGAATTCATAACTGGACTGCATCTTCTAGTTCCCGGAATAAGAAGTGACAACCAGCCAGAATGCTACGTTTCTGAAAAAATTCAAGCAACTCATCAGAATCCTTATAATTTAGTTTCCCTTGTTCAGCCTCTATCCTGTACCACTTTAGTTCGATTTCAAATACAGCCCTATTGGAGTTTTTCACGAAGAAATCAGCAAGAAGGGAGGAATATACCTGATAATATCATCTAGCAGATTAAGATGATTGCAGACATAATATGGGCCTATTCCATGTTTATTGTTTCTGTACAACACGAAATCAGTCTACTATCTAAACCAAAGAAACTATAGACATGTTTTACATTGAGGCTCCAAACCTGTAGTTGGTATCAGCATGGCAACATAGGCTTCCCATTCACAGTATGTACATTAACAGGAAGAGGCAACAGGAAAGGAAGTTACCATTTTATAAGAAATCTCAGCTATCTTATTCATAGGCTTTCTGAGATTCGATTTATATATACTTAATTTATAACTGCTTGTATTAGATTACTTCACATGTAGGCTGTACTTGACAAATGGGCATCAAGTCTATTTAGGGTAGCTTTCTATGCATGCTTACACAATAGTTCTGACTGAATCTGAGTTCTTTTAAATATTTCACATTTTTCCATGTCAAATCTGAAGTAATCAATATGGCTATAGGTATAAAAAATAAACATTATGTAGGGCAATCTGAAAGATCATGCTACAACAGAGAAAAAGAAGTACAAAAAATGATTTTGAGAAGCATAACTGCTATTACCTTGCCAGGTTGCTCATACAATGGGCTAAGATCAGAAAATAGTGATGGTACTCCCTACAAAATATGAGACATGTTAATCAATTGCAACAAAGAGAAACATTATGCTGCCTGAAAAATTGAAAAAGGGTATAAGGTATACACTAAGAAAAACAAATGGTAACCATAAATGAGACTCCTTAAATAGAAACTTAAAGTACCTCCCAAGAGCTGCTGAATTTACCTTGGTTAATAGGGGTCTGACATAATTATCTGCTGCCTCCTGAAATTTCTCTCCTCCTAGGAAATCAAGGGGCATGCGCTGTTGCAATTAGAGACAATTTTAGATCCACAGCTTCTACAGTGCATGCCCCACTCACCATATATATGGATAGACAACTTGGGATTCAGCAAATTAGTATTGCAATATAGAATAAATAAATACCACATATATCAAGATACTGTTGTGTGCCCGGAGAGCTCAACAATTTAACATGAAGGAACAAAGAAAAAATAAAAACAGTTTGAGGTAGTTTACCTTAACAGCAGATGACCAACCATATTCTTTTTTAAGTGAGATATACAATGTGCATAATCGGTCAACATTAGTGCAATATTGACCATTCTCTGAGTATAGACCAAGGCACTTTTGAACAGCTATGAAATACCTGTGTAAAACCAGTGAAAATAAATTAACTCCTAGAGTATTATCAAGAAGGGGTACAATGTAAGTCAGAAGAGTGCTATATACGCAACCCCTGAATAGAAGGGAATTCCAAAATTGAGTTGATATTAGCATCTCATATGCCAGTGTCCTGCAATTGTTCTGCAACAGCTACACTCTACCTAAATGTTCTCATGAAGCCACCATGTTTTCTAGCTTCTGCATCTATAGCTCTACCAAGTATCTCACCAGATGTTGAACTGTCAAATAAGATTATCGAATATCCCACCAGATGTTGCATCTATAGCTGCTAACATCTATAGCTCTATCACTGATGATGTCGAGCTGACAAATAATTGATTAATGAAAATTTCAGATTTAGTGAGCTGAAGCTATTGCTATGCTATATTGCTGAATAATAATGGTAAGTTGGTTAGATAAACTCTCCCTTTGCTATTATCCACAATAGATTGCCCAAAATGTTTTCTTGTACTAACCTATAACCAATAAGAAATGATAATTCATTTTTCTTCCTCAAACCCTCTTCTCTCACCTTTTGTAAACACAGTAACAATGTCATGTAACATGTTTTTTCTCTGCCAACAAAGATCACTATGCAAAAGAATGACACCTCGAGAAAGCGGTGCGATAATGATTTCCTTGAGCTTGGCTGCTAACATCTCCTCCCTGGATAGCCTGGGACTACAGCAGCTCGAGCAAGAGGCTGGCCATCCAGGAATCAACACATGCTCACATAAGCCACTGGCAGTGTTGCTTCCATTTTGTTCTAGGACTACTACATGCTTACAGGAGCATAGAGCCCTGATAACTTGGCAAAGACGAACCAGAATTTTAAACAGTTAGAAAATGTCATACAACATAAGACAATATGCACAATTTATCTTATGAATACTGAACATGTGTACCTAATTGAAGAAATGGCACAAAGAAAATGTCACAACCTTTTTGCTGTGATGGAGGAGGTTCTTGAGTATTCCAAGCAGCTGCATGATGATGTTCAGTATTCATACGATAAATTCAACCTTTGAAAGTAAGGGCCCCTTCCACATCTGTTGCGGGGAAGGGAGGCAACAGATTGGCCGAAGGACGCCTTGCACCGTGGATCTGCTCCATGGGAAGGAAGAGACGGCGGCGACCAGAGGATGCCCGACGGCGCGGCAGCGGGGGAAGCTAGACCGAGAAGAGTGAAGACGTGTTCACGTGCACAGACGGATTGTGCGATGGCGGCCAGAGGCCCAGAGATGGGGGAGTAAGAGGAGGCGGCGGCGGATGTGAGGGCCTGTCGGCCTGGTCAAGCCCTCACACCGACTGCATGGAGGTCGGATCCGCACGCGGCGGCGGTGCTCCGTGATGGCGACGGCAGCGGGGGACGGCGGTGCTCGGCGACGGCGGAGCGAGGCGAAAAGGCGGAAGTGGCGTTGCTCAGCGACGGCGACGGCGGTGGTGGTGGCGGAGGTGGCGGTGCCGCGAAGGGGAGGCGGAGGCGGAGGCAGAAGCGCGGCGCGAGCCGACGGGGACGACGATGGCGACGGAGCAAGGGGAAGGCGGCGGCGGCGGAGGTGGACGGGGCCGCGGCGGCGCAGGTGGACGCGCCCGCGGCGGCGGTGGCGCGAGCGGGAGATGGTGAGGAAGAGGGTGAGGGAGAGA

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CDS seq

MMARTSAMLRFTQLDEEDFALPPEIVASCNGYHGKYLTLVTRHNKPVNVRLEKRGQSFYICKGWKKFVELTGLRVGQCIRFSVSSPSTLDLLILDKHGVPKLPMPASSEEHLRFKAKRSIHQNSKGIRITQTPFIRNNMIVISNQLARNSSIPLVTPYSVSFRITLYLLACSIFLFQAIHPVMVQSHRLLSITGSTNQVNSLSMSLLSITLLF

Protein seq

MMARTSAMLRFTQLDEEDFALPPEIVASCNGYHGKYLTLVTRHNKPVNVRLEKRGQSFYICKGWKKFVELTGLRVGQCIRFSVSSPSTLDLLILDKHGVPKLPMPASSEEHLRFKAKRSIHQNSKGIRITQTPFIRNNMIVISNQLARNSSIPLVTPYSVSFRITLYLLACSIFLFQAIHPVMVQSHRLLSITGSTNQVNSLSMSLLSITLLF

Function B3 domain-containing protein Os10g0323000 [UniProtKB/Swiss-Prot:Q7XFU9]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsY3551G1125153400.01 OsY3551G1125153400.01.T07 Chr11 12992271 12997706 - IGDBv1
CDS seq

ATGATGGCTCGAACATCTGCTATGCTGAGATTCACCCAGTTAGATGAAGAAGATTTTGCTCTCCCACCTGAGATTGTAGCCAGCTGCAATGGATACCATGGAAAATATTTAACCTTGGTCACACGCCATAACAAACCAGTGAATGTTAGGCTCGAAAAAAGAGGCCAGTCATTCTATATCTGCAAAGGTTGGAAAAAATTTGTTGAGCTTACTGGCTTACGCGTTGGACAATGTATTAGATTCAGTGTTTCTTCTCCATCAACACTTGATCTCCTCATACTTGACAAGCATGGAGTTCCCAAGCTTCCCATGCCTGCTTCATCAGAAGAACACCTCAGGTTCAAAGCAAAAAGGTCTATACACCAAAACAGCAAAGGTATTCGTATCACACAAACACCTTTCATCAGAAATAATATGATTGTAATCTCGAACCAGTTAGCTAGGAACTCATCTATTCCATTAGTTACACCATACTCCGTATCATTTAGGATAACACTTTACTTACTAGCATGCTCCATATTTCTATTTCAGGCCATTCATCCAGTCATGGTCCAGAGTCATCGTCTCCTATCAATCACAGGATCAACAAATCAGGTCAACTCACTATCCATGTCTTTACTTTCAATTACGCTCCTCTTTTAA

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Protein seq

MMARTSAMLRFTQLDEEDFALPPEIVASCNGYHGKYLTLVTRHNKPVNVRLEKRGQSFYICKGWKKFVELTGLRVGQCIRFSVSSPSTLDLLILDKHGVPKLPMPASSEEHLRFKAKRSIHQNSKGIRITQTPFIRNNMIVISNQLARNSSIPLVTPYSVSFRITLYLLACSIFLFQAIHPVMVQSHRLLSITGSTNQVNSLSMSLLSITLLF

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM None None None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_11g0625400 SBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU NA NA NA NA NA
Nipponbare | IRGSP 1.0 | RAP-db Os11g0625400 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_11g0011650 RBH 1.601796 3.045177 10.002102
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_11g0008650 SBH 0.0 0.0 0.000000
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) NA NA NA NA NA
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_11g0011340 RBH 0.392173 0.159919 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_11g0011760 RBH 11.183613 6.418734 16.585363
Minghui 63 | MH63RS3 | HZAU OsMH63_11G0186200 RBH 4.9069885 14.5777065 8.512428
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_11g0011620 RBH 1.075955 0.206617 2.476452
Zhenshan 97 | ZS97RS3 | HZAU NA NA NA NA NA
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_11g0011750 RBH 0.427724 0.467581 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) NA NA NA NA NA
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_11g0011510 RBH 15.389654 21.339647 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_11g0011350 RBH 1.238073 0.0 0.586129
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_11g0011580 RBH 0.862745 5.257153 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_11G011490 RBH 1.234832 2.386131 1.983509
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_11g0011480 RBH 6.176347 31.824049 9.436767
Os XI: R9311 | R9311 | AGIS NA NA NA NA NA
Os XI-adm: HZ | HZ | PKU OsHZ_11g0134400 RBH None None None
Os XI-adm: J4155S | J4155S | PKU OsJ4155_11g0132000 RBH None None None
Os XI-adm: LK638S | LK638S | PKU OsLK638S_11g0129700 RBH None None None
Os XI-adm: XL628S | XL628S | PKU OsXL628S_11g0133200 RBH None None None
Os GJ-temp: 02428 | 02428 | SICAU Os02428G1121565700.01 RBH None None None
Os cB: Basmati1 | Basmati1 | SICAU OsBasmati1G1135123800.01 RBH None None None
Os O.glaberrima: Ogla | OglaRS2 | DIADE NA NA NA NA NA
Os XI-1A: CN1 | CN1 | SICAU OsCN1G1131865700.01 RBH None None None
Os XI-1A: D62 | D62 | SICAU OsD62G1133482100.01 RBH None None None
Os XI-1A: DG | DG | SICAU OsDGG1125112100.01 RBH None None None
Os GJ-temp: DHX2 | DHX2 | SICAU OsDHX2G1130029700.01 RBH None None None
Os XI-adm: FH838 | FH838 | SICAU OsFH838G1129500500.01 RBH None None None
Os XI-1A: FS32 | FS32 | SICAU OsFS32G1122700700.01 RBH None None None
Os XI-1A: G46 | G46 | SICAU OsG46G1120965300.01 RBH None None None
Os XI-adm: G630 | G630 | SICAU OsG630G1117332700.01 RBH None None None
Os XI-1B: G8 | G8 | SICAU OsG8G1125329500.01 RBH None None None
Os XI-1A: II32 | II32 | SICAU OsII32G1133693800.01 RBH None None None
Os XI-1B: J4155 | J4155 | SICAU OsJ4155G1122359400.01 RBH None None None
Os GJ-temp: Kosh | Kosh | SICAU NA NA NA NA NA
Os GJ-temp: KY131 | KY131 | SICAU NA NA NA NA NA
Os GJ-trp: Lemont | Lemont | SICAU OsLemontG1121203700.01 RBH None None None
Os GJ-adm: LJ | LJ | SICAU NA NA NA NA NA
Os GJ-sbtrp: NamRoo | NamRoo | SICAU NA NA NA NA NA
Os XI-1B: R498 | R498 | SICAU OsR498G1119923300.01 RBH None None None
Os XI-1B: R527 | R527 | SICAU OsR527G1122257500.01 RBH None None None
Os XI-1B: S548 | S548 | SICAU OsS548G1142564500.01 RBH None None None
Os XI-2: TM | TM | SICAU TMG1129277700.01 RBH None None None
Os XI-3: Tumba | Tumba | SICAU OsTumbaG1124652300.01 RBH None None None
Os XI-adm: WSSM | WSSM | SICAU OsWSSMG1119600100.01 RBH None None None
Os XI-1B: Y3551 | Y3551 | SICAU NA NA NA NA NA
Os XI-1B: Y58S | Y58S | SICAU OsY58SG1127525400.01 RBH None None None
Os XI-adm: YX1 | YX1 | SICAU OsYX1G1130134100.01 RBH None None None
Os GJ-temp: ZH11 | ZH11 | SICAU OsZH11G1128385900.01 RBH None None None
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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