Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsR527G1122257500.01 | OGI:01044490 | 50/50 | Os XI-1B: R527 | R527 | SICAU | Chr11:13411898-13418388 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | 127518_R527_INS1132640,OglaRS2_R527_INS1148620,128077_R527_INS1122410,128077_R527_DEL1122420,Kosh_R527_INS1137490,DHX2_R527_INS1119650,DHX2_R527_DEL1119660,D62_R527_INS1115270,D62_R527_DEL1115280,Nipponbare_R527_INS1139070,LJ_R527_INS1140420,Basmati1_R527_DEL1123620,Basmati1_R527_INS1123630,Basmati1_R527_INV1123530_1,Azucena_R527_DEL1124090,Azucena_R527_INS1124100,Azucena_R527_INV1123980,II32_R527_DEL1120560_1,II32_R527_DEL1120570,132278_R527_INS1122310,132278_R527_DEL1122320,KY131_R527_OTH1122310,117425_R527_DEL1120530,117425_R527_INS1120540,TM_R527_DEL1118460,TM_R527_DEL1118620,NamRoo_R527_OTH1122910,02428_R527_INS1120250,02428_R527_DEL1120260,Lemont_R527_INS1124550,Lemont_R527_DEL1124560,ZH11_R527_INS1120720,ZH11_R527_DEL1120730,
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| DNA seq | GTCTCTCCCTCACCCTCTTCCTCACCATCTCCCGCTCGCGCCACCGCCGCCGCGGGCGCGTCCACCTGCGCCGCCGCGGCCCCGTCCACCTCCGCCGCCGCCGCCTTCCCCTTGCTCCGTCGCCATCGTCGTCCCCGTCGGCTCGCGCCGCGCTTCTGCCTCCGCCTCCGCCTCCCCTTCGCGGCACCGCCACCTCCGCCACCACCACCGCCGTCGCCGTCGCTGAGCAACGCCACTTCCGCCTTTTCGCCTCGCTCCGCCGTCGCCGAGCACCGCCGTCCCCCGCTGCCGTCGCCATCACGGAGCACCGCCGCCGCGTGCGGATCCGACCTCCATGCAGTCGGTGTGAGGGCTTGACCAGGCCGACAGGCCCTCACATCCGCCGCCGCCTCCTCTTACTCCCCCATCTCTGGGCCTCTGGCCGCCATCGCACAATCCGTCTGTGCACGTGAACACGTCTTCACTCTTCTCGGTCTAGCTTCCCCCGCTGCCGCGCCGTCGGGCATCCTCTGGTCGCCGCCGTCTCTTCCTTCCCATGGAGCAGATCCACGGTGCAAGGCGTCCTTCGGCCAATCTGTTGCCTCCCTTCCCCGCAACAGATGTGGAAGGGGCCCTTACTTTCAAAGGTTGAATTTATCGTATGAATACTGAACATCATCATGCAGCTGCTTGGAATACTCAAGAACCTCCTCCATCACAGCAAAAAGGTTGTGACATTTTCTTTGTGCCATTTCTTCAATTAGGTACACATGTTCAGTATTCATAAGATAAATTGTGCATATTGTCTTATGTTGTATGACATTTTCTAACTGTTTAAAATTCTGGTTCGTCTTTGCCAAGTTATCAGGGCTCTATGCTCCTGTAAGCATGTAGTAGTCCTAGAACAAAATGGAAGCAACACTGCCAGTGGCTTATGTGAGCATGTGTTGATTCCTGGATGGCCAGCCTCTTGCTCGAGCTGCTGTAGTCCCAGGCTATCCAGGGAGGAGATGTTAGCAGCCAAGCTCAAGGAAATCATTATCGCACCGCTTTCTCGAGGTGTCATTCTTTTGCATAGTGATCTTTGTTGGCAGAGAAAAAACATGTTACATGACATTGTTACTGTGTTTACAAAAGGTGAGAGAAGAGGGTTTGAGGAAGAAAAATGAATTATCATTTCTTATTGGTTATAGGTTAGTACAAGAAAACATTTTGGGCAATCTATTGTGGATAATAGCAAAGGGAGAGTTTATCTAACCAACTTACCATTATTATTCAGCAATATAGCATAGCAATAGCTTCAGCTCACTAAATCTGAAATTTTCATTAATCAATTATTTGTCAGCTCGACATCATCAGTGATAGAGCTATAGATGTTAGCAGCTATAGATGCAACATCTGGTGGGATATTCGATAATCTTATTTGACAGTTCAACATCTGGTGAGATACTTGGTAGAGCTATAGATGCAGAAGCTAGAAAACATGGTGGCTTCATGAGAACATTTAGGTAGAGTGTAGCTGTTGCAGAACAATTGCAGGACACTGGCATATGAGATGCTAATATCAACTCAATTTTGGAATTCCCTTCTATTCAGGGGTTGCGTATATAGCACTCTTCTGACTTACATTGTACCCCTTCTTGATAATACTCTAGGAGTTAATTTATTTTCACTGGTTTTACACAGGTATTTCATAGCTGTTCAAAAGTGCCTTGGTCTATACTCAGAGAATGGTCAATATTGCACTAATGTTGACCGATTATGCACATTGTATATCTCACTTAAAAAAGAATATGGTTGGTCATCTGCTGTTAAGGTAAACTACCTCAAACTGTTTTTATTTTTTCTTTGTTCCTTCATGTTAAATTGTTGAGCTCTCCGGGCACACAACAGTATCTTGATATATGTGGTATTTATTTATTCTATATTGCAATACTAATTTGCTGAATCCCAAGTTGTCTATCCATATATATGGTGAGTGGGGCATGCACTGTAGAAGCTGTGGATCTAAAATTGTCTCTAATTGCAACAGCGCATGCCCCTTGATTTCCTAGGAGGAGAGAAATTTCAGGAGGCAGCAGATAATTATGTCAGACCCCTATTAACCAAGGTAAATTCAGCAGCTCTTGGGAGGTACTTTAAGTTTCTATTTAAGGAGTCTCATTTATGGTTACCATTTGTTTTTCTTAGTGTATACCTTATACCCTTTTTCAATTTTTCAGGCAGCATAATGTTTCTCTTTGTTGCAATTGATTAACATGTCTCATATTTTGTAGGGAGTACCATCACTATTTTCTGATCTTAGCCCATTGTATGAGCAACCTGGCAAGGTAATAGCAGTTATGCTTCTCAAAATCATTTTTTGTACTTCTTTTTCTCTGTTGTAGCATGATCTTTCAGATTGCCCTACATAATGTTTATTTTTTATACCTATAGCCATATTGATTACTTCAGATTTGACATGGAAAAATGTGAAATATTTAAAAGAACTCAGATTCAGTCAGAACTATTGTGTAAGCATGCATAGAAAGCTACCCTAAATAGACTTGATGCCCATTTGTCAAGTACAGCCTACATGTGAAGTAATCTAATACAAGCAGTTATAAATTAAGTATATATAAATCGAATCTCAGAAAGCCTATGAATAAGATAGCTGAGATTTCTTATAAAATGGTAACTTCCTTTCCTGTTGCCTCTTCCTGTTAATGTACATACTGTGAATGGGAAGCCTATGTTGCCATGCTGATACCAACTACAGGTTTGGAGCCTCAATGTAAAACATGTCTATAGTTTCTTTGGTTTAGATAGTAGACTGATTTCGTGTTGTACAGAAACAATAAACATGGAATAGGCCCATATTATGTCTGCAATCATCTTAATCTGCTAGATGATATTATCAGGTATATTCCTCCCTTCTTGCTGATTTCTTCGTGAAAAACTCCAATAGGGCTGTATTTGAAATCGAACTAAAGTGGTACAGGATAGAGGCTGAACAAGGGAAACTAAATTATAAGGATTCTGATGAGTTGCTTGAATTTTTTCAGAAACGTAGCATTCTGGCTGGTTGTCACTTCTTATTCCGGGAACTAGAAGATGCAGTCCAGTTATGAATTCAATCATTTTCAGTTATGGCTTCGATTCTTAACAAGGTCACCCACCTGATGGCTGCTATTCAAAACCATTTGCAAAGCCTGTTGTCAAGGTAAAGCCGTAAAGGTTAGTTTAAACATGGTAAACAACGAGATGCCTCATGGATCTTTCTACAAGATAGACCGCACATGTTTAGGGAATCACGTAAACTTATCCCTTAGCAGGGTAATGGACGGTCCCAGCTAGGGTTTTTTAGGGCAGGTAGATGCGGCCGCCGCGGCGGAGGTGGACGCGACCACGGCAACGGCAATGACCACGCCAGTGTGAGGCGAATGCGCGGACCAGCGGCGCGTGGCCTCAGTGCTAGGGAAAACAGAGGGTAGGAGAAGGATGATATCAAGAACGGGGCAGCAACACGTAGGATTGGGAGACGAGGCATTCCTGAGCACCGTCGCTGTGTCAGCAGATCTGTCCGCGCGGATCCATCGTTTTATTTTCCTTAGAGCCACAATACCCATAGCAGCACGGCCAAAATCAGTAGTCAACCCTAATAGATCGCTTCTTAAGCTATCTCTGCAATACCTCTCTTTTCTTTTCTCACTTACAGATCCACCATTCTCGGATCAGAGCTATAGATGAGAACCCTACCTCATAGTCTCTGATGTTAACGCAACTATAGTTTGTTATTCTTCTTTTTCCTCTTTTGTATTCTTGCCTTTTAATTTACGGGTAAATTATAACTTTTGCTTTTTATGGCACAGGATGTAAAACAACTTCTATTCTTGGGCCTTGGAATCGCTGCGCGCACGTCTTTCTCTACCAGGTGATGTACCCATATATCTATATTTTTATATGGAATCAGCTGTACATTTTTTCGGTCCCTTTGTGTTTCCTAGCTAATTTCCTAAATTGTGCATATACAGTTAGATACACTCTTCCTTTCTTTTGAGCTTTCATGGAACCGAGTTTGAGAAGGCTAGAAAGTTATTTGATTTCAAAATGATCCATGCAAACTTCTAATTTTATACCGATGGTACAGCAGTAACAATAATTGATGTGGCCTTGCTCACACACAGAAGCTATATTAGTCCACTTTGAAGTACAGTTTATAGCCCTCAGCCTACTTTTAGATCATGTGTTCCATTTTAGGTGGATAGAGTTGCATGGATGCTCATGGATCCATGCAACACTATAGTTTCCACTCCATCAGCATTTGGGAATACCTTCTGCACCTGCACCGCTGGTATTATACCATCACAGTGGTAAATACTAAATGTTGCCATATCTCTTTAGGAATAGAAAACAGTTCCGAATACAAAAAAATTCCATATTTCTTTAAAAGGCAATATTAAATGCTGTATTTATTGTGCACCATTATTTGCTCCTCTTTATTGTGTAATTTTATTCTTACCATTATCATCTTGTTATATTCTTACTATATCTTATTAGAGCACTAGAAACCACTCTTTTATCGTCTTATCATATAGCTTACTATCTTACGTTGTACATATTTTGCTTTCACCAAAAACAATTGGTTTTTATATGCACCTACAGTAATACCACCTCTGATTTTAGATCTGTCTCCATTCTAAAAGAGCAAAGCTTTGTTCAACCACTGACATACAAACAACCTATATTCCAGCTTCTCTATGATGGCTCGAACATCTGCTATGCTGAGATTCACCCAGTTAGATGAAGAAGATTTTGTAAGTACACACAAATACCTTCCAAGCCTGCATCAACGTAATATCCTATCTGTTACTAATGGGGGAATTTTTTATAGGCTCTCCCACCTGAGATTGTAGCCAGCTGCAATGGATACCATGGAAAATATTTAACCTTGGTCACACGCCATAACAAACCAGTGAATGTTAGGCTCGAAAAAAGAGGCCAGTCATTCTATATCTGCAAAGGTTGGAAAAAATTTGTTGAGCTTACTGGCTTACGCGTTGGACAATGTATTAGATTCAGTGTTTCTTCTCCATCAACACTTGATCTCCTCATACTTGACAAGCATGGAGTTCCCAAGCTTCCCATGCCTGCTTCATCAGAAGAACACCTCAGGTTCAAAGCAAAAAGGTCTATACACCAAAACAGCAAAGGTATTCGTATCACACAAACACCTTTCATCAGAAATAATATGATTGTAATCTCGAACCAGTTAGCTAGGAACTCATCTATTCCATTAGTTACACCATACTCCGTATCATTTAGGATAACACTTTACTTACTAGCATGCTCCATATTTCTATTTCAGGCCATTCATCCAGTCATGGTCCAGAGTCATCGTCTCCTATCAATCACAGGATCAACAAATCAGGTCAACTCACTATCCATGTCTTTACTTTCAATTACGCTCCTCTTTTAATCCTAACGAAATTTCGGTTCGTGCAAATAACATGACGCCACGCAACAACGCTATCTTTTAATCGTACAGATCAACCTATCATACCACTTCTGCAGTTCTATACCTGTCTATGCATGTATGCTCCGCCTTTGATTCCATCAGATGGCTATCTTTCCATCTGTGTAATGCTCTAGGCACCTTAGCTGATCTTCATCATGTGGATCAATAAACAAATTTGCGTTTATTATAACACCGGTCATCAGCCTATGTTACTGTTCTTACTTTGAACCACACCGCTCCACAACTGATCCACTCGCATTAATTTTGGTCCTATCTTCAGGACCTAAGCACACTACCGCCTAAAATATATTTACCTTCTTATTTTAGTGCTGATGCATCTATTCTCACTCCATGTTAAGATACACCATACAAGAAATACCAGAGGCACTTCTACAAATCGAACCATTCCACATTGTCATTTTCTATAGTATTAATAGCTGGTTTCTTTCATACGCATTGAAAATGCTTATAGAATACTTTCTTGCAGCGAACACCAAACCCAAGTTTGCAGATGATATCTAAGCGCAGATACTGGGAGCCCTTCAACCAGCATGATCCTTCACAGATCGACAGACCATCGTTGCAACCTAAAAAACAGATGGACAAATTTCGCCCTCAACAATGGCATAAAGCTCCACACAGTATGCATTTTCCATTTTTAAGACTACCCATCGAGGAGCAACCGTCGATATCTTCTGAATATGCTATCAATGTAGTCTGATCTCATGCTTTTGTTAGCGGCAAAGCTCGGTGTCTCCATACAGTCTGCTGTTTATGTAATATACTGCCCATGTTATAATCGTTACCCCTGTGCACTATAGACACGCTGTGGGCACTGCACTTATCACTCTATTATGGCACTTCCATATGTAGCTACTGATGCAGACACCGATTAACCTCCATGCCTATGTATGCACTATTCACTGCCTTAGCTGTAGAGTCCCGGTATCCGTCCCTCGATGCTTATTACCTTTTTGGGATCATTAGCTATACATACTGTCCTGTATTTACTGCC
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| CDS seq | MLGSKKEASHSISAKVGKNLLSLLAYALDNVLDSVFLLHQHLISSYLTSMEFPSFPCLLHQKNTSGSKQKGLYTKTAKAIHPVMVQSHRLLSITGSTNQRTPNPSLQMISKRRYWEPFNQHDPSQIDRPSLQPKKQMDKFRPQQWHKAPHSMHFPFLRLPIEEQPSISSEYAINVV |
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| Protein seq | MLGSKKEASHSISAKVGKNLLSLLAYALDNVLDSVFLLHQHLISSYLTSMEFPSFPCLLHQKNTSGSKQKGLYTKTAKAIHPVMVQSHRLLSITGSTNQRTPNPSLQMISKRRYWEPFNQHDPSQIDRPSLQPKKQMDKFRPQQWHKAPHSMHFPFLRLPIEEQPSISSEYAINVV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsR527G1122257500.01 | OsR527G1122257500.01.T03 | Chr11 | 13412942 | 13418388 | + | IGDBv1 | ||
| CDS seq | ATGTTAGGCTCGAAAAAAGAGGCCAGTCATTCTATATCTGCAAAGGTTGGAAAAAATTTGTTGAGCTTACTGGCTTACGCGTTGGACAATGTATTAGATTCAGTGTTTCTTCTCCATCAACACTTGATCTCCTCATACTTGACAAGCATGGAGTTCCCAAGCTTCCCATGCCTGCTTCATCAGAAGAACACCTCAGGTTCAAAGCAAAAAGGTCTATACACCAAAACAGCAAAGGCCATTCATCCAGTCATGGTCCAGAGTCATCGTCTCCTATCAATCACAGGATCAACAAATCAGCGAACACCAAACCCAAGTTTGCAGATGATATCTAAGCGCAGATACTGGGAGCCCTTCAACCAGCATGATCCTTCACAGATCGACAGACCATCGTTGCAACCTAAAAAACAGATGGACAAATTTCGCCCTCAACAATGGCATAAAGCTCCACACAGTATGCATTTTCCATTTTTAAGACTACCCATCGAGGAGCAACCGTCGATATCTTCTGAATATGCTATCAATGTAGTCTGA
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| Protein seq | MLGSKKEASHSISAKVGKNLLSLLAYALDNVLDSVFLLHQHLISSYLTSMEFPSFPCLLHQKNTSGSKQKGLYTKTAKAIHPVMVQSHRLLSITGSTNQRTPNPSLQMISKRRYWEPFNQHDPSQIDRPSLQPKKQMDKFRPQQWHKAPHSMHFPFLRLPIEEQPSISSEYAINVV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0011650 | RBH | 1.601796 | 3.045177 | 10.002102 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0011340 | RBH | 0.392173 | 0.159919 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0011760 | RBH | 11.183613 | 6.418734 | 16.585363 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0011620 | RBH | 1.075955 | 0.206617 | 2.476452 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0011750 | RBH | 0.427724 | 0.467581 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0011510 | RBH | 15.389654 | 21.339647 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0011350 | RBH | 1.238073 | 0.0 | 0.586129 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0011580 | RBH | 0.862745 | 5.257153 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G011490 | RBH | 1.234832 | 2.386131 | 1.983509 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0011480 | RBH | 6.176347 | 31.824049 | 9.436767 |
| Os XI: R9311 | R9311 | AGIS | NA | NA | NA | NA | NA |
| Os XI-adm: HZ | HZ | PKU | OsHZ_11g0134400 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_11g0132000 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_11g0129700 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_11g0133200 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G1121565700.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G1135123800.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | NA | NA | NA | NA | NA |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G1131865700.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G1133482100.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG1125112100.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G1130029700.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G1129500500.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G1122700700.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G1120965300.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G1117332700.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G1125329500.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G1133693800.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G1122359400.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0036047600.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0511119500.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG1121203700.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0508541900.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: R498 | R498 | SICAU | OsR498G1119923300.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: S548 | S548 | SICAU | OsS548G1142564500.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG1129277700.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG1124652300.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG1119600100.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G1125153400.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG1127525400.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G1130134100.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G1128385900.01 | RBH | None | None | None |
