Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_11g0011480 | OGI:01044490 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr11:12510598-12516881 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gcacaggcataaccaaccattttaaagaggcaaaggcagtaaatacaggacagtatgtatagctaatgatcccaaaaaggtaataagcatcgagggacggataccgggactctacagctaaggcagtgaatagtgcatacataggcatggaggttaatcggtgtctgcatcagtagctacatatggaagtgccataatagagtgataagtgcagtgcccacagcgtgtctatagtgcacaggggtaacgattataacatgggcagtatattacataaacagcagactgtatggagacaccgagctttgccgctaacaaaagcatgagatcagactacattgatagcatattcagaagatatcgacggttgctcctcgatgggtagtcttaaaaatggaaaatgcatactgtgtggagctttatgccattgttgagagcgaaatttgtccatctgttttttaggttgcaacgatggtctgtcgatctgtgaaggatcatgctggttgaagggctcccagtatctgcgcttagatatcatctgcaaacttgggtttggtgttcgctgcaagaaagtattctataagcattttcaatgcgtatgaaagaaaccagctattaatactatagaaaatgacaatgtggaatggttcgatttgtagaagtgcctctggtatttcttgtatggtgtatcttaacatggagtgagaatagatgcatcagcactAaaataagaaggtaaatatattttaggcggtagtgtgcttaggtcctgaagataggaccaaaattaatgcgagtggatcagttgtggagcggtgtggttcaaagtaagaacagtaacataggctgatgaccggtgttataataaacgcaaatttgtttattgatccacatgatgaagatcagctaaggtgcctagagcattacacagatggaaagatagccatctgatggaatcaaaggcggagcatacatgcatagacaggtatagaactgcagaagtggtatgataggttgatctgtacgattaaaagatagcgttgttgcgtggcgtcatgttattcgcacgaaccgaaatttcgttaggattaaaagaggagcgtaattgaaagtaaagacatggatagtgagttgacctgatttgttgatcctgtgattgataggagacgatgactctggaccatgactggatgaatggcctgaaatagaaatatggagcatgctagtaagtaaagtgttatcctaaatgatacggagtatggtgtaactaatggaatagatgagttcctagctaactggttcgagattacaatcatattatttctgatgaaaggtgtttgtgtgatacgaatacctttgctgttttggtgtatagacctttttgctttgaacctgaggtgttcttctgatgaagcaggcatgggaagcttgggaactccatgcttgtcaagtatgaggagatcaagtgttgatggagaagaaacactgaatctaatacattgtccaacgcgtaagccagtaagctcaacaaattttttccaacctttgcagatatagaatgactggcctcttttttcgagcctaacattcactggtttgttatggcgtgtgaccaaggttaaatattttccatggtatccattgcagctggctacaatctcaggtgggagagcctatAaaaaattcccccattagtaacagataggatattacgttgatgcaggcttggaaggtatttgtgtgtacttacaaaatcttcttcatctaactgggtgaatctcagcatagcagatgttcgagccatcatagagaagctggaatataggttgtttgtatgtcagtggttgaacaaagctttgctcttttagaatggagacagatctaaaatcagaggtggtattactgtaggtgcatataaaaaccaattgtttttggtgaaagcaaaatatgtacaacgtaagatagtaagctatatgataagacgataaaagagtggtttctagtgctctaataagatatagtaagaatataacaagatgataatggtaagaataaaattacacaataaagaggagcaaataatggtgcacaataaatacagcatttaatattgccttttaaagaaatatggattttttttgtattcggaactgttttctattcctaaagagatatggcaacatttagtatttaccactgtgatggtataataccagcggtgcaggtgcagaaggtattcccaaatgctgatggagtggaaactatagtgttgcatggatccatgagcatccatgcaactctatccacctaaaatggaacacatgatctaaaagtaggctgagggctataaactgtacttcaaagtggactaatatagcttctgtgtgtgagcaaggccacatcaattattgttactgctgtaccatcggtataaaattagaagtttgcatggatcattttgaaatcaaataactttctagccttctcaaactcggttccatgaaagctcAaaagaaaggaagagtgtatctaactgtatatgcacaatttaggaaattagctaggaaacacaaagggaccgaaaaaatgtacagctgattccatataaaaatatagatatatgggtacatcacctggtagagaaagacgtgcgcgcagcgattccaaggcccaagaatagaagttgttttacatccagtgccatAaaaagcaaaagttataatttacccgtaaattaaaaggcaagaatacaaaagaggaaaaagaagaataacaaactatagttgcgttaacatcagagactatgaggtagggttctcatctatagctctgatccgagaatggtggatctgtaagtgagaaaagaaaagagaggtattgcagagatagcttaagaagcgatctattagggttgactactgattttggccgtgctgctatgggtattgtggctctaaggaaaataaaacgatggatccgcgcggacagatctgctgacacagcgacggtgctcaggaatgcctcgtctcccaatcctacgtgttgctgccccgttcttgatatcatccttctcctaccctctgttttccctagcactgaggccacgcgctgctggtccgcgcattcgcctcacactggcgtggtcattgccgttgccgtggtcgcgtccacctccgccgcggcggccgcatctacctgccctaaaaaaccctagctgggaccgtccattaccctgctaagggataagtttacgtgattccctaaacatgtgcggtctatcttgtagaaagatccatgaggcatctcgttgtttaccatgtttaaactaacctttacggctttaccttgacaacaggctttgcaaatggttttgaatagcagccatcaggtgggtgaccttgttaagaatcgaagccataactgaaaatgattgaattcataactggactgcatcttctagttcccggaataagaagtgacaaccagccagaatgctacgtttctgaaaaaattcaagcaactcatcagaatccttataatttagtttcccttgttcagcctctatcctgtaccactttagttcgatttcaaatacagccctattggagtttttcacgaagaaatcagcaagaagggaggaatatacctgataatatcatctagcagattaagatgattgcagacataatatgggcctattccatgtttattgtttctgtacaacacgaaatcagtctactatctaaaccaaagaaactatagacatgttttacattgaggctccaaacctgtagttggtatcagcatggcaacataggcttcccattcacagtatgtacattaacaggaagaggcaacaggaaaggaagttaccattttataagaaatctcagctatcttattcataggctttctgagattcgatttatatatacttaatttataactgcttgtattagattacttcacatgtaggctgtacttgacaaatgggcatcaagtctatttagggtagctttctatgcatgcttacacaatagttctgactgaatctgagttcttttaaatatttcacatttttccatgtcaaatctgaagtaatcaatatggctataggtataaaaaataaacattatgtagggcaatctgaaagatcatgctacaacagagaaaaagaagtacaaaaaatgattttgagaagcataactgctattaccttgccaggttgctcatacaatgggctaagatcagaaaatagtgatggtactccctacaaaatatgagacatgttaatcaattgcaacaaagagaaacattatgctgcctgaaaaattgaaaaagggtataaggtatacactaagAaaaacaaatggtaaccataaatgagactccttaaatagaaacttaaagtacctcccaagagctgctgaatttaccttggttaataggggtctgacataattatctgctgcctcctgaaatttctctcctcctaggaaatcaaggggcatgcgctgttgcaattagagacaattttagatccacagcttctacagtgcatgccccactcaccatatatatggatagacaacttgggattcagcaaattagtattgcaatatagaataaataaataccacatatatcaagatactgttgtgtgcccggagagctcaacaatttaacatgaaggaacaaagaaaaaataaaaacagtttgaggtagtttaccttaacagcagatgaccaaccatattcttttttaagtgagatatacaatgtgcataatcggtcaacattagtgcaatattgaccattctctgagtatagaccaaggcacttttgaacagctatgaaatacctgtgtaaaaccagtgaaaataaattaactcctagagtattatcaagaaggggtacaatgtaagtcagaagagtgctatatacgcaacccctgaatagaagggaattccaaaattgagttgatattagcatctcatatgccagtgtcctgcaattgttctgcaacagctacactctacctaaatgttctcatgaagccgccatgttttctagcttctgcatctatagctctaccaagtatctcaccagatgttgaactgtcaaataagattatcgaatatcccaccagatgttgcatctatagctgctaacatctatagctctatcactgatgatgtcgagctgacaaataattgattaatgaaaatttcagatttagtgagctgaagctattgctatgctatattgctgaataataatggtaagttggttagataaactctccctttgctattatccacaatagattgcccaaaatgttttcttgtactaacctataaccaataagaaatgataattcatttttcttcctcaaaccctcttctctcaccttttgtaaacacagtaacAatgtcatgtaacatgttttttctctgccaacaaagatcactatgcaaaagaatgacacctcgagaaagcggtgcgataatgatttccttgagcttggctgctaacatctcctccctggatagcctgggactacagcagctcgagcaagaggctggccatccaggaatcaacacatgctcacataagccactggcagtgttgcttccattttgttctaggactactacatgcttacaggagcatagagccctgataacttggcaaagacgaaccagaattttaaacagttagaaaatgtcatacaacataagacaatatgcacaatttatcttatgaatactgaacatgtgtacctaattgaagaaatggcacaaagaaaatgtcacaacctttttgctgtgatggaggaggttcttgagtattccaagcagctgcatgatgatgttcagtattcatacgataaattcaacctttgaaagtaagggccccttccacatctgttgcggggaagggaggcaacagattggccgaaggacgccttgcaccgtggatctgctccatgggaaggaagagacggcggcgaccagaggatgcccgacggcgcggcagcgggggaagctagaccgagaagagtgaagacgtgttcacgtgcacagacggattgtgcgatggcggccagaggcccagagatgggggagtaagaggaggcggcggcggatgtgagggcctgtcggcctggtcaagccctcacaccgactgcatggaggtcggatccgcacgcggcggcggtgctccgtgatggcgacggcagcgggggacggcggtgctcggcgacggcggagcgaggcgaaaagg
More
|
||||||||||
| CDS seq | atgttaggctcgaaaaaagaggccagtcattctatatctgcaaaggttggaaaaaatttgttgagcttactggcttacgcgttggacaatgtattagattcagtgtttcttctccatcaacacttgatctcctcatacttgacaagcatggagttcccaagcttcccatgcctgcttcatcagaagaacacctcaggttcaaagcaaaaaggtctatacaccaaaacagcaaaggccattcatccagtcatggtccagagtcatcgtctcctatcaatcacaggatcaacaaatcagcgaacaccaaacccaagtttgcagatgatatctaagcgcagatactgggagcccttcaaccagcatgatccttcacagatcgacagaccatcgttgcaacctaaaaaacagatggacaaatttcgctctcaacaatggcataaagctccacacagtatgcattttccatttttaagactacccatcgaggagcaaccgtcgatatcttctgaatatgctatcaatgtagtctga
More
|
||||||||||
| Protein seq | MLGSKKEASHSISAKVGKNLLSLLAYALDNVLDSVFLLHQHLISSYLTSMEFPSFPCLLHQKNTSGSKQKGLYTKTAKAIHPVMVQSHRLLSITGSTNQRTPNPSLQMISKRRYWEPFNQHDPSQIDRPSLQPKKQMDKFRSQQWHKAPHSMHFPFLRLPIEEQPSISSEYAINVV |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_11g0011480 | OsNaBo_11g0011480.02 | Chr11 | 12514032 | 12516406 | - | NAM | ||
| CDS seq | atgcaacatctggtgggatattcgataatcttatttgacagttcaacatctggtgagatacttggtagagctatagatgcagaagctagaaaacatggcggcttcatgagaacatttaggtatttcatagctgttcaaaagtgccttggtctatactcagagaatggtcaatattgcactaatgttgaccgattatgcacattgtatatctcacttaaaaaagaatatggttggtcatctgctgttaagcgcatgccccttgatttcctaggaggagagaaatttcaggaggcagcagataattatgtcagacccctattaaccaagggagtaccatcactattttctgatcttagcccattgtatgagcaacctggcaaggtaatagcagttatgcttctcaaaatcattttttgtacttctttttctctgttgtag
More
|
|||||||
| Protein seq | MQHLVGYSIILFDSSTSGEILGRAIDAEARKHGGFMRTFRYFIAVQKCLGLYSENGQYCTNVDRLCTLYISLKKEYGWSSAVKRMPLDFLGGEKFQEAADNYVRPLLTKGVPSLFSDLSPLYEQPGKVIAVMLLKIIFCTSFSLL |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_11g0011480 | OsNaBo_11g0011480.01 | Chr11 | 12510598 | 12516881 | - | NAM | ||
| CDS seq | atgttaggctcgaaaaaagaggccagtcattctatatctgcaaaggttggaaaaaatttgttgagcttactggcttacgcgttggacaatgtattagattcagtgtttcttctccatcaacacttgatctcctcatacttgacaagcatggagttcccaagcttcccatgcctgcttcatcagaagaacacctcaggttcaaagcaaaaaggtctatacaccaaaacagcaaaggccattcatccagtcatggtccagagtcatcgtctcctatcaatcacaggatcaacaaatcagcgaacaccaaacccaagtttgcagatgatatctaagcgcagatactgggagcccttcaaccagcatgatccttcacagatcgacagaccatcgttgcaacctaaaaaacagatggacaaatttcgctctcaacaatggcataaagctccacacagtatgcattttccatttttaagactacccatcgaggagcaaccgtcgatatcttctgaatatgctatcaatgtagtctga
More
|
|||||||
| Protein seq | MLGSKKEASHSISAKVGKNLLSLLAYALDNVLDSVFLLHQHLISSYLTSMEFPSFPCLLHQKNTSGSKQKGLYTKTAKAIHPVMVQSHRLLSITGSTNQRTPNPSLQMISKRRYWEPFNQHDPSQIDRPSLQPKKQMDKFRSQQWHKAPHSMHFPFLRLPIEEQPSISSEYAINVV |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr11 | 12514099 | 12515034 | - | OsNaBo_11g0011480.02 | OsNaBo_11g0011480.01,OsNaBo_11g0011480.02 | All |
| A5 | Chr11 | 12515457 | 12516085 | - | OsNaBo_11g0011480.02 | OsNaBo_11g0011480.01,OsNaBo_11g0011480.02 | All |
| AF | Chr11 | 12516275 | 12516881 | - | OsNaBo_11g0011480.02 | OsNaBo_11g0011480.01,OsNaBo_11g0011480.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 6.176347 | 31.824049 | 9.436767 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0011650 | RBH | 1.601796 | 3.045177 | 10.002102 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0011340 | RBH | 0.392173 | 0.159919 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0011760 | RBH | 11.183613 | 6.418734 | 16.585363 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0011620 | RBH | 1.075955 | 0.206617 | 2.476452 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0011750 | RBH | 0.427724 | 0.467581 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0011510 | RBH | 15.389654 | 21.339647 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0011350 | RBH | 1.238073 | 0.0 | 0.586129 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0011580 | RBH | 0.862745 | 5.257153 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G011490 | RBH | 1.234832 | 2.386131 | 1.983509 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
