Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.



Accession Name		Subpopulations	Assembly	Annotation	Locus Tag Prefix	Genes	References
	Nipponbare	Geng-japonica-temp	IRGSP1.0	Gramene (+Isoseq)	OsNip_	38,404	Yoshihiro et al., 2013
				MSU	LOC_Os	55,801	Yoshihiro et al., 2013
				RAP-db	Os	37,859	Yoshihiro et al., 2013
	Azucena	Geng-japonica-trop1	AzucenaRS1	Gramene (+Isoseq)	OsAzu_	36,882	Zhou et al., 2020
	KETAN NANGKA::IRGC 19961-2	Geng-japonica-trop2	Os128077RS1	Gramene (+Isoseq)	OsKeNa_	37,994	Zhou et al., 2020
	CHAO MEO::IRGC 80273-1	Geng-japonica-subtrp	Os132278RS1	Gramene (+Isoseq)	OsCMeo_	37,240	Zhou et al., 2020
	ARC 10497::IRGC 12485-1	circum-Basmati	Os117425RS1	Gramene (+Isoseq)	OsARC_	37,181	Zhou et al., 2020
	PR 106::IRGC 53418-1	Xian-indica-1B2	Os127742RS1	Gramene (+Isoseq)	OsPr106_	36,720	Zhou et al., 2020
	Minghui 63	Xian-indica-adm	MH63RS3	HZAU	OsMH63_	59,903	Song et al., 2021
	IR64	Xian-indica-1B1	OsIR64RS1	Gramene (+Isoseq)	OsIR64_	36,925	Zhou et al., 2020
	Zhenshan 97	Xian-indica-1A	ZS97RS3	HZAU	OsZS97_	60,935	Song et al., 2021
	LIMA::IRGC 81487-1	Xian-indica-3A	Os127564RS1	Gramene (+Isoseq)	OsLima_	37,994	Zhou et al., 2020
	KHAO YAI GUANG::IRGC 65972-1	Xian-indica-3B1	Os127518RS1	Gramene (+Isoseq)	OsKYG_	37,522	Zhou et al., 2020
	GOBOL SAIL (BALAM)::IRGC 26624-2	Xian-indica-2A	Os132424RS1	Gramene (+Isoseq)	OsGoSa_	36,467	Zhou et al., 2020
	LIU XU::IRGC 109232-1	Xian-indica-3B2	Os125827RS1	Gramene (+Isoseq)	OsLiXu_	44,942	Zhou et al., 2020
	LARHA MUGAD::IRGC 52339-1	Xian-indica-2B	Os125619RS1	Gramene (+Isoseq)	OsLaMu_	37,474	Zhou et al., 2020
	N22	circum-Aus1	OsN22RS2	Gramene (+Isoseq)	OsN22_	37,598	Stein et al., 2018
	NATEL BORO::IRGC 34749-1	circum-Aus2	Os127652RS1	Gramene (+Isoseq)	OsNaBo_	36,392	Zhou et al., 2020

Accessions