Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Gene ID	OGI # \| Score	Accession \| Assembly \| Annotation	Loci	Gene Symbol(s)	Function	GO
OsMH63_04G0318900	OGI:04063200 \| 14/16	Minghui 63 \| MH63RS3 \| HZAU	Chr04:21917539-21919938	OsS1Fa1	DNA-binding protein S1FA1 [UniProtKB/Swiss-Prot: P42553] More	GO:0003677 (DNA binding) GO:0006355 (regulation of transcription, DNA-templated) GO:0005634 (nucleus) More
OsMH63_03G0482300	OGI:03078970 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr03:31066470-31070251	C3H24, OsC3H24, OsTZF3, TZF3, OsCCCH-Zn-8, CCCH-Zn-8	Zinc finger CCCH domain-containing protein 24 [UniProtKB/Swiss-Prot: Q10EL1] More	GO:0003677 (DNA binding) GO:0046872 (metal ion binding)
OsMH63_02G0351800	OGI:02061390 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr02:22804832-22809332	OsbHLH097	bHLH transcription factor RHL1 [UniProtKB/Swiss-Prot: D0PX88] More	GO:0003677 (DNA binding) GO:0046983 (protein dimerization activity) GO:0005634 (nucleus) More
OsMH63_03G0278600	OGI:03045270 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr03:17812494-17816716	GL1D, OsMyb3, OSMYB3, MYB3, OsGL1D, SMG3, SG3	Transcription factor MYB1 [UniProtKB/Swiss-Prot: A0A4D6Q411] More	GO:0003677 (DNA binding) GO:0005634 (nucleus)
OsMH63_03G0448400	OGI:03073610 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr03:28894073-28896954	-	LOB domain-containing protein 12 [UniProtKB/Swiss-Prot: Q8LBW3] More	GO:0003677 (DNA binding) GO:0009965 (leaf morphogenesis) GO:0010016 (shoot system morphogenesis) More
OsMH63_02G0085800	OGI:02015200 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr02:5101186-5101656	BZIP16, OsbZIP16, OsSTA51	Basic leucine zipper 43 [UniProtKB/Swiss-Prot: Q9FMC2] More	GO:0003677 (DNA binding) GO:0003700 (DNA-binding transcription factor activity) GO:0005634 (nucleus) More
OsMH63_02G0089300	OGI:02015810 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr02:5366028-5368406	SAP4, OsSAP4, ZFP185	Zinc finger A20 and AN1 domain-containing stress-associated protein 4 [UniProtKB/Swiss-Prot: Q6H7P8] More	GO:0003677 (DNA binding) GO:0008270 (zinc ion binding)
OsMH63_03G0587300	OGI:03096180 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr03:37592327-37595777	-	DNA-binding protein HEXBP [UniProtKB/Swiss-Prot: Q04832] More	GO:0003677 (DNA binding) GO:0008270 (zinc ion binding) GO:0005634 (nucleus) More
OsMH63_03G0604000	OGI:03098820 \| 14/16	Minghui 63 \| MH63RS3 \| HZAU	Chr03:38529843-38530793	NAC78, ONAC078, ONAC78	NAC domain-containing protein 72 [UniProtKB/Swiss-Prot: Q93VY3] More	GO:0003677 (DNA binding) GO:0006355 (regulation of transcription, DNA-templated) GO:0005634 (nucleus) More
OsMH63_02G0566600	OGI:02097700 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr02:36011908-36015349	NAC32, ONAC032, ONAC32, ONAC056, ONAC56	NAC domain-containing protein 100 [UniProtKB/Swiss-Prot: Q9FLJ2] More	GO:0003677 (DNA binding) GO:0003700 (DNA-binding transcription factor activity) GO:0005634 (nucleus) More
OsMH63_10G0297200	OGI:10056600 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr10:20085420-20092390	HOX9, Oshox9, OsHox9, OsHB2, HB2, OSHB2	Homeobox-leucine zipper protein HOX9 [UniProtKB/Swiss-Prot: A2Z8L4] More	GO:0003677 (DNA binding) GO:0008289 (lipid binding) GO:0005634 (nucleus) More
OsMH63_12G0064100	OGI:12010220 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr12:3885725-3887446	DLN254, R2R3-MYB, OsDLN254, OsMYB2	Myb-related protein 308 [UniProtKB/Swiss-Prot: P81393] More	GO:0003677 (DNA binding) GO:0005634 (nucleus)
OsMH63_11G0117000	OGI:11022400 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr11:7605037-7609342	OsZHD4	Zinc-finger homeodomain protein 4 [UniProtKB/Swiss-Prot: Q53N87] More	GO:0003677 (DNA binding) GO:0046872 (metal ion binding) GO:0005634 (nucleus) More
OsMH63_11G0129900	OGI:11024680 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr11:8515167-8526525	PL, PS, Pl, Pl1, Ra*, bhlh13, OsbHLH013, OsbHLH13, Ra, OSB1, Ra1, OsGL3A, GL3A, OsB2, OsMYC7, MYC7, OsPs, Ps, OsHLH1, HLH1, OsbHLH014 More	Anthocyanin regulatory Lc protein [UniProtKB/Swiss-Prot: P13526] More	GO:0003677 (DNA binding) GO:0046983 (protein dimerization activity) GO:0005634 (nucleus) More
OsMH63_03G0200000	OGI:03032230 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr03:12392833-12396730	C3H23, OsC3H23	Zinc finger CCCH domain-containing protein 23 [UniProtKB/Swiss-Prot: Q10LZ9] More	GO:0003677 (DNA binding) GO:0046872 (metal ion binding) GO:0003723 (RNA binding) More
OsMH63_07G0468900	OGI:07078640 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr07:29924135-29928683	BZIP61, OsbZIP61	Transcription factor RF2b [UniProtKB/Swiss-Prot: Q6S4P4] More	GO:0003677 (DNA binding) GO:0003700 (DNA-binding transcription factor activity) GO:0005634 (nucleus) More
OsMH63_07G0469000	OGI:07078660 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr07:29930926-29938080	OsVAL2, VAL2, DLN195, OsDLN195	B3 domain-containing protein Os07g0679700 [UniProtKB/Swiss-Prot: Q6Z3U3] More	GO:0003677 (DNA binding) GO:0008270 (zinc ion binding) GO:0005634 (nucleus) More
OsMH63_12G0322500	OGI:12062940 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr12:22797002-22797745	ZFP252, RZF71, DLN263, OsDLN263	Zinc finger protein 1 [UniProtKB/Swiss-Prot: Q42430] More	GO:0003677 (DNA binding) GO:0046872 (metal ion binding) GO:0005634 (nucleus) More
OsMH63_09G0296200	OGI:09051930 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr09:19253274-19255211	ZHD1, OsZHD1, ACL-D, OsACL-D	Zinc-finger homeodomain protein 1 [UniProtKB/Swiss-Prot: A2Z259] More	GO:0003677 (DNA binding) GO:0046872 (metal ion binding) GO:0005634 (nucleus) More
OsMH63_09G0322900	OGI:09056330 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr09:20810993-20813841	NAC72, ONAC072, ONAC72, DLN228, OsDLN228	NAC domain-containing protein 100 [UniProtKB/Swiss-Prot: Q9FLJ2] More	GO:0003677 (DNA binding) GO:0003700 (DNA-binding transcription factor activity) GO:0005634 (nucleus) More
OsMH63_09G0350500	OGI:09061460 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr09:22758865-22762651	OsMYB42/85, MYB42/85, OsMYB85, MYB85	Protein ODORANT1 [UniProtKB/Swiss-Prot: Q50EX6] More	GO:0003677 (DNA binding) GO:0005634 (nucleus)
OsMH63_10G0285500	OGI:10054750 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr10:19089824-19092646	-	Zinc finger CCCH domain-containing protein 67 [UniProtKB/Swiss-Prot: Q2QPW2] More	GO:0003677 (DNA binding) GO:0046872 (metal ion binding)
OsMH63_08G0432900	OGI:08077510 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr08:29070589-29074811	BZIP68, OsbZIP68	Transcription factor RF2b [UniProtKB/Swiss-Prot: Q6S4P4] More	GO:0003677 (DNA binding) GO:0003700 (DNA-binding transcription factor activity) GO:0005634 (nucleus) More
OsMH63_09G0249500	OGI:09043850 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr09:16253387-16254863	OsZHD9	Zinc-finger homeodomain protein 9 [UniProtKB/Swiss-Prot: Q6ER21] More	GO:0003677 (DNA binding) GO:0046872 (metal ion binding) GO:0005634 (nucleus) More
OsMH63_09G0219700	OGI:09038120 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr09:14315770-14317559	-	Protein PLASTID REDOX INSENSITIVE 2, chloroplastic [UniProtKB/Swiss-Prot: Q6H612] More	GO:0003677 (DNA binding) GO:0010468 (regulation of gene expression) GO:0042644 (chloroplast nucleoid) More
OsMH63_12G0310800	OGI:12061120 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr12:21972385-21974768	DOF28, OsDof28, Dof28, OsDof-28	Dof zinc finger protein DOF3.6 [UniProtKB/Swiss-Prot: Q9M2U1] More	GO:0003677 (DNA binding) GO:0046872 (metal ion binding) GO:0006355 (regulation of transcription, DNA-templated) GO:0005634 (nucleus) More
OsMH63_12G0229600	OGI:12045280 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr12:15819662-15823100	-	Zinc finger BED domain-containing protein RICESLEEPER 1 [UniProtKB/Swiss-Prot: B9FJG3] More	GO:0003677 (DNA binding) GO:0046872 (metal ion binding) GO:0046983 (protein dimerization activity) GO:0009791 (post-embryonic development) GO:0005634 (nucleus) More
OsMH63_11G0214300	OGI:11040960 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr11:16446079-16448671	-	Transcription factor bHLH62 [UniProtKB/Swiss-Prot: Q9SRT2] More	GO:0003677 (DNA binding) GO:0003700 (DNA-binding transcription factor activity) GO:0046983 (protein dimerization activity) GO:0006355 (regulation of transcription, DNA-templated) GO:0005634 (nucleus) More
OsMH63_11G0268200	OGI:11051050 \| 3/16	Minghui 63 \| MH63RS3 \| HZAU	Chr11:20071323-20073806	-	Zinc finger BED domain-containing protein RICESLEEPER 2 [UniProtKB/Swiss-Prot: Q6AVI0] More	GO:0003677 (DNA binding) GO:0046872 (metal ion binding) GO:0046983 (protein dimerization activity) GO:0009791 (post-embryonic development) GO:0005634 (nucleus) More
OsMH63_11G0277400	OGI:11052780 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr11:20592543-20602776	SPL19, OsSPL19	Putative squamosa promoter-binding-like protein 19 [UniProtKB/Swiss-Prot: Q2R3Y1] More	GO:0003677 (DNA binding) GO:0046872 (metal ion binding) GO:0042025 (host cell nucleus) GO:0005634 (nucleus) More
OsMH63_11G0285200	OGI:11054000 \| 2/16	Minghui 63 \| MH63RS3 \| HZAU	Chr11:21108262-21111680	-	Putative AC transposase [UniProtKB/Swiss-Prot: P08770] More	GO:0003677 (DNA binding) GO:0046983 (protein dimerization activity) GO:0006310 (DNA recombination) GO:0032196 (transposition) More
OsMH63_11G0305400	OGI:11057590 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr11:22602586-22610912	-	ATP-dependent DNA helicase At3g02060, chloroplastic [UniProtKB/Swiss-Prot: F4JFJ3] More	GO:0005524 (ATP binding) GO:0003677 (DNA binding) GO:0003678 (DNA helicase activity) GO:0009507 (chloroplast) More
OsMH63_12G0058700	OGI:12009210 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr12:3496262-3498949	WRI1-2, AP2/EREBP155, AP2/EREBP#155, OsWRI1-2, OsWRI1b, ERF124, DERF8, OsDERF8, OsERF#124, OsERF124, AP2/EREBP#158, AP2/EREBP158 More	Ethylene-responsive transcription factor ERF112 [UniProtKB/Swiss-Prot: P93007] More	GO:0003677 (DNA binding) GO:0003700 (DNA-binding transcription factor activity) GO:0009873 (ethylene-activated signaling pathway) GO:0005634 (nucleus) More
OsMH63_12G0064800	OGI:12010360 \| 15/16	Minghui 63 \| MH63RS3 \| HZAU	Chr12:3924512-3931273	OsCHB701, CHB701	SWI/SNF complex subunit SWI3C [UniProtKB/Swiss-Prot: Q9XI07] More	GO:0003677 (DNA binding) GO:0006338 (chromatin remodeling) GO:0007275 (multicellular organism development) GO:0016514 (SWI/SNF complex) More
OsMH63_12G0101300	OGI:12018540 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr12:6314132-6319951	-	Protein RKD4 [UniProtKB/Swiss-Prot: Q9LVU8] More	GO:0003677 (DNA binding) GO:0003700 (DNA-binding transcription factor activity) GO:0009793 (embryo development ending in seed dormancy) GO:0005634 (nucleus) More
OsMH63_01G0664300	OGI:01119050 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr01:42153226-42157215	SPL2, OsSPL2	Squamosa promoter-binding-like protein 2 [UniProtKB/Swiss-Prot: Q0JGI1] More	GO:0003677 (DNA binding) GO:0046872 (metal ion binding) GO:0042025 (host cell nucleus) GO:0005634 (nucleus) More
OsMH63_01G0705100	OGI:01125810 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr01:44680289-44681005	PCL1, OsPCL1, OsLUX, LUX	Transcription factor PCL1 [UniProtKB/Swiss-Prot: Q94DH3] More	GO:0003677 (DNA binding) GO:0003700 (DNA-binding transcription factor activity) GO:0048511 (rhythmic process) GO:0005634 (nucleus) More
OsMH63_01G0485100	OGI:01088290 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr01:31065112-31067925	-	RNA polymerase II transcriptional coactivator KELP [UniProtKB/Swiss-Prot: O65155] More	GO:0003677 (DNA binding) GO:0003713 (transcription coactivator activity) GO:0060261 (positive regulation of transcription initiation from RNA polymerase II promoter) GO:0005634 (nucleus) GO:0005667 (transcription regulator complex) More
OsMH63_01G0526700	OGI:01095730 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr01:33580666-33583378	BZIP6, OsbZIP06, OsbZIP6	Basic leucine zipper 6 [UniProtKB/Swiss-Prot: Q5JMK6] More	GO:0003677 (DNA binding) GO:0003700 (DNA-binding transcription factor activity) GO:0045893 (positive regulation of transcription, DNA-templated) GO:0005634 (nucleus) More
OsMH63_01G0541400	OGI:01098200 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr01:34617272-34619240	BHLH185, OsbHLH185, bHLH185	Transcription factor BHLH148 [UniProtKB/Swiss-Prot: Q75KV9] More	GO:0003677 (DNA binding) GO:0046983 (protein dimerization activity) GO:0006355 (regulation of transcription, DNA-templated) GO:0009414 (response to water deprivation) GO:0005634 (nucleus) More
OsMH63_01G0549500	OGI:01099810 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr01:35157665-35160385	OsbHLH069	Transcription factor bHLH123 [UniProtKB/Swiss-Prot: Q8GXT3] More	GO:0003677 (DNA binding) GO:0001228 (DNA-binding transcription activator activity, RNA polymerase II-specific) GO:0003700 (DNA-binding transcription factor activity) GO:0046983 (protein dimerization activity) GO:0005634 (nucleus) More
OsMH63_01G0585900	OGI:01105950 \| 15/16	Minghui 63 \| MH63RS3 \| HZAU	Chr01:37281211-37282929	G1L7, OsG1L7	Protein G1-like7 [UniProtKB/Swiss-Prot: A2XED8] More	GO:0003677 (DNA binding) GO:0009299 (mRNA transcription) GO:0007275 (multicellular organism development) GO:0090698 (post-embryonic plant morphogenesis) GO:0005634 (nucleus) More
OsMH63_01G0591300	OGI:01106820 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr01:37588362-37593344	C3H11, OsC3H11, DLN25, OsDLN25	Zinc finger CCCH domain-containing protein 11 [UniProtKB/Swiss-Prot: Q0JHZ2] More	GO:0003677 (DNA binding) GO:0046872 (metal ion binding) GO:0002181 (cytoplasmic translation) GO:0005829 (cytosol) More
OsMH63_02G0057000	OGI:02010400 \| 3/16	Minghui 63 \| MH63RS3 \| HZAU	Chr02:3344426-3346606	-	Putative AC transposase [UniProtKB/Swiss-Prot: P08770] More	GO:0003677 (DNA binding) GO:0046983 (protein dimerization activity) GO:0006310 (DNA recombination) GO:0032196 (transposition) More
OsMH63_02G0059500	OGI:02010890 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr02:3479788-3486131	ARF5, OsARF5, ARF6A, OsARF6a, OsARF6, ARF6	Auxin response factor 6 [UniProtKB/Swiss-Prot: Q6H6V4] More	GO:0003677 (DNA binding) GO:0009734 (auxin-activated signaling pathway) GO:0006355 (regulation of transcription, DNA-templated) GO:0005634 (nucleus) More
OsMH63_02G0132500	OGI:02023270 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr02:8218732-8223356	DLN52, OsDLN52	Putative Myb family transcription factor At1g14600 [UniProtKB/Swiss-Prot: Q700D9] More	GO:0003677 (DNA binding) GO:0003700 (DNA-binding transcription factor activity) GO:0006355 (regulation of transcription, DNA-templated) GO:0005634 (nucleus) More
OsMH63_02G0137200	OGI:02024030 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr02:8552644-8556576	BZIP19, OsbZIP19	Basic leucine zipper 19 [UniProtKB/Swiss-Prot: Q6K3R9] More	GO:0003677 (DNA binding) GO:0003700 (DNA-binding transcription factor activity) GO:0045893 (positive regulation of transcription, DNA-templated) GO:0005634 (nucleus) More
OsMH63_02G0360900	OGI:02062900 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr02:23427664-23429178	EIL5, OsEIL5	ETHYLENE INSENSITIVE 3-like 5 protein [UniProtKB/Swiss-Prot: Q9FJQ5] More	GO:0003677 (DNA binding) GO:0003700 (DNA-binding transcription factor activity) GO:0009873 (ethylene-activated signaling pathway) GO:0006355 (regulation of transcription, DNA-templated) GO:0005634 (nucleus) More
OsMH63_01G0397000	OGI:01073840 \| 3/16	Minghui 63 \| MH63RS3 \| HZAU	Chr01:25544604-25546784	-	Putative AC transposase [UniProtKB/Swiss-Prot: P08770] More	GO:0003677 (DNA binding) GO:0046983 (protein dimerization activity) GO:0006310 (DNA recombination) GO:0032196 (transposition) More
OsMH63_01G0455200	OGI:01083180 \| 16/16	Minghui 63 \| MH63RS3 \| HZAU	Chr01:29126043-29129959	DWT1, OsWOX7, Os WOX7, WOX7, OsWOX9A, DWT1/WOX9A, OsDWT1, WOX9A	WUSCHEL-related homeobox 7 [UniProtKB/Swiss-Prot: Q0JKK6] More	GO:0003677 (DNA binding) GO:0007275 (multicellular organism development) GO:0005634 (nucleus) More

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