Transcription factor bHLH110 [UniProtKB/Swiss-Prot: Q9SFZ3]

GO:0003677 (DNA binding)
GO:0001228 (DNA-binding transcription activator activity, RNA polymerase II-specific)
GO:0003700 (DNA-binding transcription factor activity)
GO:0046983 (protein dimerization activity)
GO:0005634 (nucleus)

Serine/threonine-protein kinase ATM [UniProtKB/Swiss-Prot: Q9M3G7]

GO:0005524 (ATP binding)
GO:0003677 (DNA binding)
GO:0004674 (protein serine/threonine kinase activity)
GO:0006974 (cellular response to DNA damage stimulus)
GO:0051321 (meiotic cell cycle)
GO:2001020 (regulation of response to DNA damage stimulus)
GO:0008380 (RNA splicing)
GO:0005634 (nucleus)

Two-component response regulator ORR23 [UniProtKB/Swiss-Prot: B8AEH1]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0009736 (cytokinin-activated signaling pathway)
GO:0000160 (phosphorelay signal transduction system)
GO:0005634 (nucleus)

BZIP23, OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23, BZIP24, OsbZIP24, OsFD3, FD3, bZIP24/OsFD3

ABSCISIC ACID-INSENSITIVE 5-like protein 3 [UniProtKB/Swiss-Prot: Q9C5Q2]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0009738 (abscisic acid-activated signaling pathway)
GO:0045893 (positive regulation of transcription, DNA-templated)
GO:0005634 (nucleus)

NAC domain-containing protein 21/22 [UniProtKB/Swiss-Prot: Q84TE6]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0009734 (auxin-activated signaling pathway)
GO:0048527 (lateral root development)
GO:0010072 (primary shoot apical meristem specification)
GO:0005634 (nucleus)

Histone H4 [UniProtKB/Swiss-Prot: P0CG89]

GO:0003677 (DNA binding)
GO:0046982 (protein heterodimerization activity)
GO:0006334 (nucleosome assembly)
GO:0042025 (host cell nucleus)
GO:0000786 (nucleosome)
GO:0005634 (nucleus)

Histone H4 [UniProtKB/Swiss-Prot: P0CG89]

GO:0003677 (DNA binding)
GO:0046982 (protein heterodimerization activity)
GO:0006334 (nucleosome assembly)
GO:0042025 (host cell nucleus)
GO:0000786 (nucleosome)
GO:0005634 (nucleus)

Protein REVEILLE 1 [UniProtKB/Swiss-Prot: F4KGY6]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0009734 (auxin-activated signaling pathway)
GO:0007623 (circadian rhythm)
GO:0010600 (regulation of auxin biosynthetic process)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0005634 (nucleus)

Transcription factor bHLH63 [UniProtKB/Swiss-Prot: Q8GY61]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0046983 (protein dimerization activity)
GO:0009908 (flower development)
GO:0009911 (positive regulation of flower development)
GO:0009637 (response to blue light)
GO:0006351 (transcription, DNA-templated)
GO:0005634 (nucleus)

AP2-like ethylene-responsive transcription factor CRL5 [UniProtKB/Swiss-Prot: Q84Z02]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0048830 (adventitious root development)
GO:0080037 (negative regulation of cytokinin-activated signaling pathway)
GO:0005634 (nucleus)

Lysine-specific histone demethylase 1 homolog 1 [UniProtKB/Swiss-Prot: Q6Z690]

GO:0003677 (DNA binding)
GO:0016491 (oxidoreductase activity)
GO:0016575 (histone deacetylation)
GO:0051568 (histone H3-K4 methylation)
GO:0045892 (negative regulation of transcription, DNA-templated)
GO:0048364 (root development)
GO:0005737 (cytoplasm)
GO:0005634 (nucleus)

DNA repair and recombination protein RAD54 [UniProtKB/Swiss-Prot: A4PBL4]

GO:0005524 (ATP binding)
GO:0003677 (DNA binding)
GO:0015616 (DNA translocase activity)
GO:0004386 (helicase activity)
GO:0051301 (cell division)
GO:0045003 (double-strand break repair via synthesis-dependent strand annealing)
GO:0007131 (reciprocal meiotic recombination)
GO:0005634 (nucleus)

DNA-3-methyladenine glycosylase [UniProtKB/Swiss-Prot: Q39147]

GO:0003905 (alkylbase DNA N-glycosylase activity)
GO:0003677 (DNA binding)
GO:0008725 (DNA-3-methyladenine glycosylase activity)
GO:0052822 (DNA-3-methylguanine glycosylase activity)
GO:0052821 (DNA-7-methyladenine glycosylase activity)
GO:0043916 (DNA-7-methylguanine glycosylase activity)
GO:0006284 (base-excision repair)
GO:0005634 (nucleus)

Transcription factor bHLH128 [UniProtKB/Swiss-Prot: Q8H102]

GO:0003677 (DNA binding)
GO:0001228 (DNA-binding transcription activator activity, RNA polymerase II-specific)
GO:0003700 (DNA-binding transcription factor activity)
GO:0046983 (protein dimerization activity)
GO:0010119 (regulation of stomatal movement)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0005829 (cytosol)
GO:0005634 (nucleus)

Transcription initiation factor TFIID subunit 4b [UniProtKB/Swiss-Prot: F4K4L7]

GO:0003677 (DNA binding)
GO:0008134 (transcription factor binding)
GO:0006352 (DNA-templated transcription, initiation)
GO:0045944 (positive regulation of transcription by RNA polymerase II)
GO:0005669 (transcription factor TFIID complex)

Transcription factor bHLH74 [UniProtKB/Swiss-Prot: Q6NKN9]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0046983 (protein dimerization activity)
GO:0040008 (regulation of growth)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0009637 (response to blue light)
GO:0005634 (nucleus)

AP2-like ethylene-responsive transcription factor CRL5 [UniProtKB/Swiss-Prot: Q84Z02]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0048830 (adventitious root development)
GO:0080037 (negative regulation of cytokinin-activated signaling pathway)
GO:0005634 (nucleus)

Probable histone H2A.5 [UniProtKB/Swiss-Prot: Q94E96]

GO:0003677 (DNA binding)
GO:0046982 (protein heterodimerization activity)
GO:0006325 (chromatin organization)
GO:0006342 (chromatin silencing)
GO:0000790 (nuclear chromatin)
GO:0000786 (nucleosome)

NAC domain-containing protein 21/22 [UniProtKB/Swiss-Prot: Q84TE6]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0009734 (auxin-activated signaling pathway)
GO:0048527 (lateral root development)
GO:0010072 (primary shoot apical meristem specification)
GO:0005634 (nucleus)

Protein G1-like1 [UniProtKB/Swiss-Prot: Q0E3M2]

GO:0003677 (DNA binding)
GO:0009299 (mRNA transcription)
GO:0007275 (multicellular organism development)
GO:0090698 (post-embryonic plant morphogenesis)
GO:0009416 (response to light stimulus)
GO:0005634 (nucleus)

Nucleoid-associated protein At2g24020, chloroplastic [UniProtKB/Swiss-Prot: O82230]

GO:0003677 (DNA binding)
GO:0045037 (protein import into chloroplast stroma)
GO:0009507 (chloroplast)
GO:0009941 (chloroplast envelope)
GO:0009570 (chloroplast stroma)
GO:0009535 (chloroplast thylakoid membrane)
GO:0005773 (vacuole)

DLC1, RR24, OsRR24, Rrb2, Orr4, OsRR17, RR17, OsRRB2, OsRR24/LEPTO1, OsLEPTO1, LEPTO1, OsDLC1

Two-component response regulator ORR24 [UniProtKB/Swiss-Prot: A2X1N2]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0009736 (cytokinin-activated signaling pathway)
GO:0000160 (phosphorelay signal transduction system)
GO:0005634 (nucleus)

Zinc finger protein GAI-ASSOCIATED FACTOR 1 [UniProtKB/Swiss-Prot: Q9SCQ6]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0046872 (metal ion binding)
GO:0010336 (gibberellic acid homeostasis)
GO:0009740 (gibberellic acid mediated signaling pathway)
GO:0009937 (regulation of gibberellic acid mediated signaling pathway)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0005634 (nucleus)

Transcriptional adapter ADA2 [UniProtKB/Swiss-Prot: Q75LL6]

GO:0003682 (chromatin binding)
GO:0003677 (DNA binding)
GO:0003713 (transcription coactivator activity)
GO:0008270 (zinc ion binding)
GO:0006338 (chromatin remodeling)
GO:0035066 (positive regulation of histone acetylation)
GO:0006357 (regulation of transcription by RNA polymerase II)
GO:0005634 (nucleus)

AP2-like ethylene-responsive transcription factor CRL5 [UniProtKB/Swiss-Prot: Q84Z02]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0048830 (adventitious root development)
GO:0080037 (negative regulation of cytokinin-activated signaling pathway)
GO:0005634 (nucleus)

Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13 [UniProtKB/Swiss-Prot: Q10CH5]

GO:0003677 (DNA binding)
GO:0046983 (protein dimerization activity)
GO:0080006 (internode patterning)
GO:0090229 (negative regulation of red or far-red light signaling pathway)
GO:0045893 (positive regulation of transcription, DNA-templated)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0005634 (nucleus)

DNA-directed RNA polymerases I and III subunit rpac1 [UniProtKB/Swiss-Prot: Q54SN4]

GO:0003677 (DNA binding)
GO:0003899 (DNA-directed 5'-3' RNA polymerase activity)
GO:0046983 (protein dimerization activity)
GO:0006360 (transcription by RNA polymerase I)
GO:0006383 (transcription by RNA polymerase III)
GO:0005736 (RNA polymerase I complex)
GO:0005666 (RNA polymerase III complex)

ERF101, OsERF#101, OsERF101, OsDERF6, DERF6, AP2/EREBP#089, AP2/EREBP89, OsRap2.6, Rap2.6, ERF113, OsERF113

Ethylene-responsive transcription factor LEP [UniProtKB/Swiss-Prot: Q9M644]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0009873 (ethylene-activated signaling pathway)
GO:0009740 (gibberellic acid mediated signaling pathway)
GO:0010030 (positive regulation of seed germination)
GO:0009739 (response to gibberellin)
GO:0005634 (nucleus)

DNA-directed RNA polymerase II subunit RPB1 [UniProtKB/Swiss-Prot: P14248]

GO:0003677 (DNA binding)
GO:0003899 (DNA-directed 5'-3' RNA polymerase activity)
GO:0046872 (metal ion binding)
GO:0006366 (transcription by RNA polymerase II)
GO:0005634 (nucleus)

Zinc finger CCCH domain-containing protein 28 [UniProtKB/Swiss-Prot: Q0JD07]

GO:0003677 (DNA binding)
GO:0046872 (metal ion binding)
GO:0003723 (RNA binding)
GO:0000381 (regulation of alternative mRNA splicing, via spliceosome)
GO:0005737 (cytoplasm)
GO:0005654 (nucleoplasm)
GO:0005634 (nucleus)

DNA (cytosine-5)-methyltransferase 1A [UniProtKB/Swiss-Prot: Q7Y1I7]

GO:0003682 (chromatin binding)
GO:0003886 (DNA (cytosine-5-)-methyltransferase activity)
GO:0003677 (DNA binding)
GO:0010424 (DNA methylation on cytosine within a CG sequence)
GO:0016458 (gene silencing)
GO:0010216 (maintenance of DNA methylation)
GO:0005634 (nucleus)

Replication factor C subunit 4 [UniProtKB/Swiss-Prot: Q7XRX1]

GO:0005524 (ATP binding)
GO:0003677 (DNA binding)
GO:0006281 (DNA repair)
GO:0006261 (DNA-dependent DNA replication)
GO:0005663 (DNA replication factor C complex)
GO:0005634 (nucleus)

DNA polymerase I A, chloroplastic [UniProtKB/Swiss-Prot: Q6Z4T5]

GO:0008408 (3'-5' exonuclease activity)
GO:0008409 (5'-3' exonuclease activity)
GO:0003677 (DNA binding)
GO:0003887 (DNA-directed DNA polymerase activity)
GO:0006281 (DNA repair)
GO:0006261 (DNA-dependent DNA replication)
GO:0009507 (chloroplast)
GO:0005737 (cytoplasm)

WOX4, OsWOX4, Os WOX4, TAB1, Os WUS, WUS, OsWOX1, WOX1, OsWUS, OsTAB, TAB1/WUS, MOC3, MOC3/OsWUS, SRT1, MOC3/TAB1/SRT1, DC1, OsDC1, OsTAB1

WUSCHEL-related homeobox 4 [UniProtKB/Swiss-Prot: Q7XTV3]

GO:0003677 (DNA binding)
GO:0051301 (cell division)
GO:0010087 (phloem or xylem histogenesis)
GO:0010067 (procambium histogenesis)
GO:0007165 (signal transduction)
GO:0009888 (tissue development)
GO:0005634 (nucleus)

Transcription factor bHLH128 [UniProtKB/Swiss-Prot: Q8H102]

GO:0003677 (DNA binding)
GO:0001228 (DNA-binding transcription activator activity, RNA polymerase II-specific)
GO:0003700 (DNA-binding transcription factor activity)
GO:0046983 (protein dimerization activity)
GO:0010119 (regulation of stomatal movement)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0005829 (cytosol)
GO:0005634 (nucleus)

Transcription factor MUTE [UniProtKB/Swiss-Prot: Q9M8K6]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0046983 (protein dimerization activity)
GO:0009913 (epidermal cell differentiation)
GO:0045893 (positive regulation of transcription, DNA-templated)
GO:0010374 (stomatal complex development)
GO:0005634 (nucleus)

Protein CHROMATIN REMODELING 24 [UniProtKB/Swiss-Prot: Q8W103]

GO:0005524 (ATP binding)
GO:0003677 (DNA binding)
GO:0015616 (DNA translocase activity)
GO:0004386 (helicase activity)
GO:0006310 (DNA recombination)
GO:0045951 (positive regulation of mitotic recombination)
GO:0046686 (response to cadmium ion)
GO:0005634 (nucleus)

Exonuclease V, chloroplastic [UniProtKB/Swiss-Prot: Q9FKK6]

GO:0051539 (4 iron, 4 sulfur cluster binding)
GO:0003677 (DNA binding)
GO:0046872 (metal ion binding)
GO:0045145 (single-stranded DNA 5'-3' exodeoxyribonuclease activity)
GO:0036297 (interstrand cross-link repair)
GO:0009507 (chloroplast)
GO:0005634 (nucleus)

NAC domain-containing protein 43 [UniProtKB/Swiss-Prot: Q84WP6]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0010047 (fruit dehiscence)
GO:0009834 (plant-type secondary cell wall biogenesis)
GO:0045893 (positive regulation of transcription, DNA-templated)
GO:0005634 (nucleus)

Ethylene-responsive transcription factor CRF4 [UniProtKB/Swiss-Prot: Q9SUE3]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0009736 (cytokinin-activated signaling pathway)
GO:0009873 (ethylene-activated signaling pathway)
GO:0048366 (leaf development)
GO:0005737 (cytoplasm)
GO:0005634 (nucleus)

Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 [UniProtKB/Swiss-Prot: Q9LMK2]

GO:0003677 (DNA binding)
GO:0009299 (mRNA transcription)
GO:0007275 (multicellular organism development)
GO:0090698 (post-embryonic plant morphogenesis)
GO:0009416 (response to light stimulus)
GO:0005634 (nucleus)

NGR5, ERF142, OsERF#142, OsERF142, AP2/EREBP#049, AP2/EREBP49, SMOS1, OsSMOS1, SHB, OsAP2-EREBP-049, RLA1, RLA1/SMOS1, OsERF142/SMOS1, OsNGR5

AP2-like ethylene-responsive transcription factor SMOS1 [UniProtKB/Swiss-Prot: X5HYT8]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0009734 (auxin-activated signaling pathway)
GO:0009742 (brassinosteroid mediated signaling pathway)
GO:0005737 (cytoplasm)
GO:0005634 (nucleus)

Dof zinc finger protein DOF3.5 [UniProtKB/Swiss-Prot: Q9SVC5]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0046872 (metal ion binding)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0005634 (nucleus)

Probable histone H2A.4 [UniProtKB/Swiss-Prot: Q6L500]

GO:0003677 (DNA binding)
GO:0046982 (protein heterodimerization activity)
GO:0006325 (chromatin organization)
GO:0006342 (chromatin silencing)
GO:0000790 (nuclear chromatin)
GO:0000786 (nucleosome)

ERF85, OsERF#085, OsERF085, OsERF85, AP2/EREBP#151, AP2/EREBP151, AP2/EREBP#062, AP2/EREBP62, MFS1, ERF130, OsERF#130, OsERF130, AP2/EREBP#165, AP2/EREBP165, DLN151, OsDLN151

Ethylene-responsive transcription factor 12 [UniProtKB/Swiss-Prot: Q94ID6]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0006952 (defense response)
GO:0009873 (ethylene-activated signaling pathway)
GO:0005634 (nucleus)

Putative transcription factor bHLH041 [UniProtKB/Swiss-Prot: Q9LTS4]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0046983 (protein dimerization activity)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0010200 (response to chitin)
GO:0005634 (nucleus)

Cryptochrome DASH, chloroplastic/mitochondrial [UniProtKB/Swiss-Prot: Q651U1]

GO:0003677 (DNA binding)
GO:0003913 (DNA photolyase activity)
GO:0006281 (DNA repair)
GO:0018298 (protein-chromophore linkage)
GO:0009507 (chloroplast)
GO:0005739 (mitochondrion)

Factor of DNA methylation 1 [UniProtKB/Swiss-Prot: Q9S9P3]

GO:0003677 (DNA binding)
GO:0003725 (double-stranded RNA binding)
GO:0043621 (protein self-association)
GO:0003723 (RNA binding)
GO:0080188 (gene silencing by RNA-directed DNA methylation)
GO:0010569 (regulation of double-strand break repair via homologous recombination)
GO:0009506 (plasmodesma)

Protein CHROMATIN REMODELING 5 [UniProtKB/Swiss-Prot: F4IV99]

GO:0005524 (ATP binding)
GO:0003677 (DNA binding)
GO:0004386 (helicase activity)
GO:0006325 (chromatin organization)
GO:0005634 (nucleus)
GO:0009506 (plasmodesma)

FZP, fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1, SGDP7, ERF67, OsERF#067, OsERF067, OsERF67, AP2/EREBP#076, AP2/EREBP76

Ethylene-responsive transcription factor ERF071 [UniProtKB/Swiss-Prot: O22259]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0071456 (cellular response to hypoxia)
GO:0009873 (ethylene-activated signaling pathway)
GO:2000280 (regulation of root development)
GO:0034059 (response to anoxia)
GO:0005634 (nucleus)