Poly [ADP-ribose] polymerase 2-A [UniProtKB/Swiss-Prot: Q5Z8Q9]

GO:0003677 (DNA binding)
GO:0003950 (NAD+ ADP-ribosyltransferase activity)
GO:1990404 (protein ADP-ribosylase activity)
GO:0006302 (double-strand break repair)
GO:0070212 (protein poly-ADP-ribosylation)
GO:0005730 (nucleolus)
GO:0005634 (nucleus)

ABSCISIC ACID-INSENSITIVE 5-like protein 3 [UniProtKB/Swiss-Prot: Q9C5Q2]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0009738 (abscisic acid-activated signaling pathway)
GO:0045893 (positive regulation of transcription, DNA-templated)
GO:0005634 (nucleus)

NAC29, ONAC029, ONAC29, OsSWN2, OsSWN2L, OsSWN2S, OsNST1/2, SWN2, SWN2L, SWN2S, NST1/2, DLN201, OsDLN201

NAC domain-containing protein 43 [UniProtKB/Swiss-Prot: Q84WP6]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0010047 (fruit dehiscence)
GO:0009834 (plant-type secondary cell wall biogenesis)
GO:0045893 (positive regulation of transcription, DNA-templated)
GO:0005634 (nucleus)

AT-hook motif nuclear-localized protein 1 [UniProtKB/Swiss-Prot: Q8VYJ2]

GO:0003680 (minor groove of adenine-thymine-rich DNA binding)
GO:0003677 (DNA binding)
GO:0043565 (sequence-specific DNA binding)
GO:0098687 (chromosomal region)
GO:0005737 (cytoplasm)
GO:0005739 (mitochondrion)
GO:0005730 (nucleolus)
GO:0005654 (nucleoplasm)
GO:0005634 (nucleus)

Dof zinc finger protein DOF5.3 [UniProtKB/Swiss-Prot: Q84TE9]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0046872 (metal ion binding)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0048364 (root development)
GO:0090057 (root radial pattern formation)
GO:0001944 (vasculature development)
GO:0005634 (nucleus)

Transcription factor ILR3 [UniProtKB/Swiss-Prot: Q9FH37]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0046983 (protein dimerization activity)
GO:0019760 (glucosinolate metabolic process)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0005634 (nucleus)

DNA-directed RNA polymerase III subunit RPC4 [UniProtKB/Swiss-Prot: Q5E9Z7]

GO:0003677 (DNA binding)
GO:0003899 (DNA-directed 5'-3' RNA polymerase activity)
GO:0051607 (defense response to virus)
GO:0045087 (innate immune response)
GO:0045089 (positive regulation of innate immune response)
GO:0032728 (positive regulation of interferon-beta production)
GO:0006383 (transcription by RNA polymerase III)
GO:0005666 (RNA polymerase III complex)

Transcription factor bHLH93 [UniProtKB/Swiss-Prot: Q9LSL1]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0046983 (protein dimerization activity)
GO:0045487 (gibberellin catabolic process)
GO:0007275 (multicellular organism development)
GO:0010371 (regulation of gibberellin biosynthetic process)
GO:0005634 (nucleus)

Transcription factor GAMYB [UniProtKB/Swiss-Prot: A2WW87]

GO:0003677 (DNA binding)
GO:0048653 (anther development)
GO:0030154 (cell differentiation)
GO:0009555 (pollen development)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0005634 (nucleus)

Protein RDM1 [UniProtKB/Swiss-Prot: Q9LUJ3]

GO:0003677 (DNA binding)
GO:0043621 (protein self-association)
GO:0006306 (DNA methylation)
GO:0070918 (production of small RNA involved in gene silencing by RNA)
GO:0044030 (regulation of DNA methylation)
GO:0005654 (nucleoplasm)
GO:0005634 (nucleus)
GO:0000419 (RNA polymerase V complex)

Endoribonuclease Dicer homolog 3a [UniProtKB/Swiss-Prot: Q5N870]

GO:0005524 (ATP binding)
GO:0003677 (DNA binding)
GO:0004386 (helicase activity)
GO:0046872 (metal ion binding)
GO:0004525 (ribonuclease III activity)
GO:0003723 (RNA binding)
GO:0031047 (gene silencing by RNA)
GO:0006396 (RNA processing)
GO:0005634 (nucleus)

DNA excision repair protein CSB [UniProtKB/Swiss-Prot: Q7F2E4]

GO:0005524 (ATP binding)
GO:0003677 (DNA binding)
GO:0008094 (DNA-dependent ATPase activity)
GO:0004386 (helicase activity)
GO:0006283 (transcription-coupled nucleotide-excision repair)
GO:0005634 (nucleus)

S28, S28(t), rpl27-3, rpl27, mtRPL27a, RPL27-1, rpl27-1, rpl27, mtRPL27b, S27, S27(t), S27(t)*, S28

Zinc finger BED domain-containing protein RICESLEEPER 2 [UniProtKB/Swiss-Prot: Q6AVI0]

GO:0003677 (DNA binding)
GO:0046872 (metal ion binding)
GO:0046983 (protein dimerization activity)
GO:0009791 (post-embryonic development)
GO:0005634 (nucleus)

Transcription factor IBH1-like 1 [UniProtKB/Swiss-Prot: Q9M0B9]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0046983 (protein dimerization activity)
GO:0009742 (brassinosteroid mediated signaling pathway)
GO:0009740 (gibberellic acid mediated signaling pathway)
GO:0040008 (regulation of growth)
GO:0005634 (nucleus)

Zinc finger CCCH domain-containing protein 59 [UniProtKB/Swiss-Prot: Q69NK8]

GO:0003677 (DNA binding)
GO:0046872 (metal ion binding)
GO:0061632 (RNA lariat debranching enzyme activator activity)
GO:0000398 (mRNA splicing, via spliceosome)
GO:0005829 (cytosol)
GO:0071014 (post-mRNA release spliceosomal complex)

Ethylene-responsive transcription factor ERF114 [UniProtKB/Swiss-Prot: Q9FH54]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0050832 (defense response to fungus)
GO:0009873 (ethylene-activated signaling pathway)
GO:0007275 (multicellular organism development)
GO:0005634 (nucleus)

DNA-directed RNA polymerases I, II, and III subunit RPABC5 [UniProtKB/Swiss-Prot: Q39290]

GO:0003677 (DNA binding)
GO:0003899 (DNA-directed 5'-3' RNA polymerase activity)
GO:0008270 (zinc ion binding)
GO:0006351 (transcription, DNA-templated)
GO:0005634 (nucleus)

NAC domain-containing protein 21/22 [UniProtKB/Swiss-Prot: Q84TE6]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0009734 (auxin-activated signaling pathway)
GO:0048527 (lateral root development)
GO:0010072 (primary shoot apical meristem specification)
GO:0005634 (nucleus)

Histone H4 [UniProtKB/Swiss-Prot: P0CG89]

GO:0003677 (DNA binding)
GO:0046982 (protein heterodimerization activity)
GO:0006334 (nucleosome assembly)
GO:0042025 (host cell nucleus)
GO:0000786 (nucleosome)
GO:0005634 (nucleus)

Transcription factor bHLH93 [UniProtKB/Swiss-Prot: Q9LSL1]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0046983 (protein dimerization activity)
GO:0045487 (gibberellin catabolic process)
GO:0007275 (multicellular organism development)
GO:0010371 (regulation of gibberellin biosynthetic process)
GO:0005634 (nucleus)

AT-hook motif nuclear-localized protein 1 [UniProtKB/Swiss-Prot: Q8VYJ2]

GO:0003680 (minor groove of adenine-thymine-rich DNA binding)
GO:0003677 (DNA binding)
GO:0043565 (sequence-specific DNA binding)
GO:0098687 (chromosomal region)
GO:0005737 (cytoplasm)
GO:0005739 (mitochondrion)
GO:0005730 (nucleolus)
GO:0005654 (nucleoplasm)
GO:0005634 (nucleus)

Splicing factor U2af small subunit A [UniProtKB/Swiss-Prot: Q9ZQW8]

GO:0003677 (DNA binding)
GO:0046872 (metal ion binding)
GO:0030628 (pre-mRNA 3'-splice site binding)
GO:0000398 (mRNA splicing, via spliceosome)
GO:0005681 (spliceosomal complex)
GO:0089701 (U2AF complex)

Zinc finger CCCH domain-containing protein 19 [UniProtKB/Swiss-Prot: Q9SIV5]

GO:0003677 (DNA binding)
GO:0042393 (histone binding)
GO:0046872 (metal ion binding)
GO:0032776 (DNA methylation on cytosine)
GO:0031047 (gene silencing by RNA)
GO:0010964 (regulation of heterochromatin assembly by small RNA)
GO:0005829 (cytosol)
GO:0005634 (nucleus)

Histone H4 [UniProtKB/Swiss-Prot: P0CG89]

GO:0003677 (DNA binding)
GO:0046982 (protein heterodimerization activity)
GO:0006334 (nucleosome assembly)
GO:0042025 (host cell nucleus)
GO:0000786 (nucleosome)
GO:0005634 (nucleus)

Transcription factor RSL2 [UniProtKB/Swiss-Prot: Q84WK0]

GO:0003677 (DNA binding)
GO:0001228 (DNA-binding transcription activator activity, RNA polymerase II-specific)
GO:0003700 (DNA-binding transcription factor activity)
GO:0046983 (protein dimerization activity)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0009733 (response to auxin)
GO:0048766 (root hair initiation)
GO:0005634 (nucleus)

DNA polymerase epsilon subunit 3 [UniProtKB/Swiss-Prot: Q5R4W3]

GO:0003677 (DNA binding)
GO:0046982 (protein heterodimerization activity)
GO:0043966 (histone H3 acetylation)
GO:0005671 (Ada2/Gcn5/Ada3 transcription activator complex)
GO:0008622 (epsilon DNA polymerase complex)

Deoxyribodipyrimidine photo-lyase [UniProtKB/Swiss-Prot: Q6F6A2]

GO:0003904 (deoxyribodipyrimidine photo-lyase activity)
GO:0003677 (DNA binding)
GO:0071949 (FAD binding)
GO:0006281 (DNA repair)
GO:0000719 (photoreactive repair)
GO:0009650 (UV protection)
GO:0005634 (nucleus)

Cyclic dof factor 2 [UniProtKB/Swiss-Prot: Q93ZL5]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0046872 (metal ion binding)
GO:0009908 (flower development)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0005634 (nucleus)

DNA replication licensing factor MCM7 [UniProtKB/Swiss-Prot: B8BMI1]

GO:0005524 (ATP binding)
GO:0003677 (DNA binding)
GO:0003678 (DNA helicase activity)
GO:0007049 (cell cycle)
GO:0006270 (DNA replication initiation)
GO:0009555 (pollen development)
GO:0005737 (cytoplasm)
GO:0042555 (MCM complex)
GO:0000347 (THO complex)

Transcription factor RSL2 [UniProtKB/Swiss-Prot: Q84WK0]

GO:0003677 (DNA binding)
GO:0001228 (DNA-binding transcription activator activity, RNA polymerase II-specific)
GO:0003700 (DNA-binding transcription factor activity)
GO:0046983 (protein dimerization activity)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0009733 (response to auxin)
GO:0048766 (root hair initiation)
GO:0005634 (nucleus)

Dof zinc finger protein MNB1A [UniProtKB/Swiss-Prot: P38564]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0000976 (transcription regulatory region sequence-specific DNA binding)
GO:0008270 (zinc ion binding)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0005634 (nucleus)

NAC domain-containing protein 21/22 [UniProtKB/Swiss-Prot: Q84TE6]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0009734 (auxin-activated signaling pathway)
GO:0048527 (lateral root development)
GO:0010072 (primary shoot apical meristem specification)
GO:0005634 (nucleus)

Septin and tuftelin-interacting protein 1 homolog 1 [UniProtKB/Swiss-Prot: Q9SHG6]

GO:0003677 (DNA binding)
GO:1990446 (U1 snRNP binding)
GO:0000398 (mRNA splicing, via spliceosome)
GO:0042752 (regulation of circadian rhythm)
GO:0000390 (spliceosomal complex disassembly)
GO:0031981 (nuclear lumen)
GO:0071008 (U2-type post-mRNA release spliceosomal complex)

DNA-directed RNA polymerase II subunit RPB1 [UniProtKB/Swiss-Prot: P18616]

GO:0003677 (DNA binding)
GO:0003899 (DNA-directed 5'-3' RNA polymerase activity)
GO:0046872 (metal ion binding)
GO:0006366 (transcription by RNA polymerase II)
GO:0009506 (plasmodesma)
GO:0005665 (RNA polymerase II, core complex)
GO:0005773 (vacuole)

Meiotic recombination protein SPO11-2 [UniProtKB/Swiss-Prot: Q5ZPI9]

GO:0005524 (ATP binding)
GO:0003677 (DNA binding)
GO:0016889 (endodeoxyribonuclease activity, producing 3'-phosphomonoesters)
GO:0046872 (metal ion binding)
GO:0000737 (DNA catabolic process, endonucleolytic)
GO:0005694 (chromosome)
GO:0005634 (nucleus)

RNA polymerase sigma factor sigA [UniProtKB/Swiss-Prot: Q0J7T6]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0016987 (sigma factor activity)
GO:0006352 (DNA-templated transcription, initiation)
GO:0080005 (photosystem stoichiometry adjustment)
GO:2001141 (regulation of RNA biosynthetic process)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0009507 (chloroplast)

ATP-dependent DNA helicase PIF1 [UniProtKB/Swiss-Prot: Q0R4F1]

GO:0043139 (5'-3' DNA helicase activity)
GO:0005524 (ATP binding)
GO:0003677 (DNA binding)
GO:0006310 (DNA recombination)
GO:0006281 (DNA repair)
GO:0000002 (mitochondrial genome maintenance)
GO:0000723 (telomere maintenance)
GO:0005739 (mitochondrion)
GO:0005634 (nucleus)

DNA-directed RNA polymerase 2, chloroplastic/mitochondrial [UniProtKB/Swiss-Prot: Q8VWF8]

GO:0003677 (DNA binding)
GO:0003899 (DNA-directed 5'-3' RNA polymerase activity)
GO:0006351 (transcription, DNA-templated)
GO:0009507 (chloroplast)
GO:0005739 (mitochondrion)
GO:0009536 (plastid)

DNA topoisomerase 3-alpha [UniProtKB/Swiss-Prot: C7J0A2]

GO:0003677 (DNA binding)
GO:0003916 (DNA topoisomerase activity)
GO:0003917 (DNA topoisomerase type I (single strand cut, ATP-independent) activity)
GO:0008270 (zinc ion binding)
GO:0006265 (DNA topological change)
GO:0005694 (chromosome)
GO:0005634 (nucleus)

Transcription factor bHLH128 [UniProtKB/Swiss-Prot: Q8H102]

GO:0003677 (DNA binding)
GO:0001228 (DNA-binding transcription activator activity, RNA polymerase II-specific)
GO:0003700 (DNA-binding transcription factor activity)
GO:0046983 (protein dimerization activity)
GO:0010119 (regulation of stomatal movement)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0005829 (cytosol)
GO:0005634 (nucleus)

Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 [UniProtKB/Swiss-Prot: Q9LMK2]

GO:0003677 (DNA binding)
GO:0009299 (mRNA transcription)
GO:0007275 (multicellular organism development)
GO:0090698 (post-embryonic plant morphogenesis)
GO:0009416 (response to light stimulus)
GO:0005634 (nucleus)

ERF3, AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2, DLN23, OsDLN23

Ethylene-responsive transcription factor 4 [UniProtKB/Swiss-Prot: Q9LW49]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0006952 (defense response)
GO:0009873 (ethylene-activated signaling pathway)
GO:0005634 (nucleus)

Transcription factor bHLH150 [UniProtKB/Swiss-Prot: Q9M9L6]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0046983 (protein dimerization activity)
GO:0009742 (brassinosteroid mediated signaling pathway)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0005634 (nucleus)

ATP-dependent DNA helicase PIF1 [UniProtKB/Swiss-Prot: Q0R4F1]

GO:0043139 (5'-3' DNA helicase activity)
GO:0005524 (ATP binding)
GO:0003677 (DNA binding)
GO:0006310 (DNA recombination)
GO:0006281 (DNA repair)
GO:0000002 (mitochondrial genome maintenance)
GO:0000723 (telomere maintenance)
GO:0005739 (mitochondrion)
GO:0005634 (nucleus)

DNA gyrase subunit B, chloroplastic/mitochondrial [UniProtKB/Swiss-Prot: Q5NBJ3]

GO:0005524 (ATP binding)
GO:0003677 (DNA binding)
GO:0003918 (DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity)
GO:0046872 (metal ion binding)
GO:0006265 (DNA topological change)
GO:0009507 (chloroplast)
GO:0005694 (chromosome)
GO:0005739 (mitochondrion)

Cyclic dof factor 2 [UniProtKB/Swiss-Prot: Q93ZL5]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0046872 (metal ion binding)
GO:0009908 (flower development)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0005634 (nucleus)

Probable chromatin-remodeling complex ATPase chain [UniProtKB/Swiss-Prot: Q7G8Y3]

GO:0005524 (ATP binding)
GO:0003677 (DNA binding)
GO:0008094 (DNA-dependent ATPase activity)
GO:0004386 (helicase activity)
GO:0031491 (nucleosome binding)
GO:0043044 (ATP-dependent chromatin remodeling)
GO:0016584 (nucleosome positioning)
GO:0005634 (nucleus)

AT-hook motif nuclear-localized protein 1 [UniProtKB/Swiss-Prot: Q8VYJ2]

GO:0003680 (minor groove of adenine-thymine-rich DNA binding)
GO:0003677 (DNA binding)
GO:0043565 (sequence-specific DNA binding)
GO:0098687 (chromosomal region)
GO:0005737 (cytoplasm)
GO:0005739 (mitochondrion)
GO:0005730 (nucleolus)
GO:0005654 (nucleoplasm)
GO:0005634 (nucleus)

Homeobox-DDT domain protein RLT2 [UniProtKB/Swiss-Prot: Q9FFH1]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0009908 (flower development)
GO:0045892 (negative regulation of transcription, DNA-templated)
GO:0006351 (transcription, DNA-templated)
GO:0010228 (vegetative to reproductive phase transition of meristem)
GO:0005634 (nucleus)

ATP-dependent DNA helicase PIF1 [UniProtKB/Swiss-Prot: Q0R4F1]

GO:0043139 (5'-3' DNA helicase activity)
GO:0005524 (ATP binding)
GO:0003677 (DNA binding)
GO:0006310 (DNA recombination)
GO:0006281 (DNA repair)
GO:0000002 (mitochondrial genome maintenance)
GO:0000723 (telomere maintenance)
GO:0005739 (mitochondrion)
GO:0005634 (nucleus)