Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_12G0039700 | OGI:12005750 | 3/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr12:2158253-2160084 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGAAATTAGTGGTAGTGTTCCCCCAATGATATGCCCACAATTCAGTGGTGATAATCCTCAGATGTGGAAGGCCAACTGTGAACAGTACTTTGATGTATATGGAATTCATCCAGCAAATTGGGTTAAAATTGCCACCCTGAATTTCTCGGGAAATGCTGCATTTTGGTTACAATCAGTGAGGTCTCAGATGGCAGGAATTTCTTGGTATGGGTTGTGTGAAGCTGTTTGTGCTAGATTCGCTAAGGACAAGCATCAGGCCCTCATTAGACAATGGATTCACTTAAATCAGACTGGTACTGTAGCTGAGTATATGGAGAAGTTTGATGGTTTAATGCACCAACTGATGGCATATGACTCCTCCCTGATTCCAGTATACTTTGTTACCAAGTTCGTTGAAGGGCTCAGAGATGAAATTAGGGTGGTGGTAATGGTCCAAAGACCCCAGGATCTTGATACAGCTTGTGCTATTGCTCTGTTGCAGGAAGAGGCAATTGAAGGGATTAAATCACCAGCTCCTAAAAGATCAGACTCAGTACTTGGAATTAAGGGCAGTAGACCCATCAGTAATTACAGTAATCCGCTCAATACAAAGTCCAACAATACCAGTGCTGAAGACAGGAGAGGTACAGAGGCAGCTAGAGCCAGAGATGAAAAATTGGCTGCTCTGAGGTCCTATAGAAGAGCTAAGGGTCTGTGCTTTACATGTGGAGAAAGATGGGGCAAGGAACATAAATGTGCCAGTTCTATACAGTTACATGTGGTGGAGGAATTATTGGAAGCTCTAACTGTTAATTCAGAAGCTGACCCTGATTCCAGTCCTGAAGATAGTGAGATCCAACAGCAGGGAGTCTTACTGGCCATTTCACAGCAAGCAGTTTGGGGAACTGAGTCCACAAGATCTATCAAACTCAGGGGTTGGGTTCAGGATATGGAATTACTAATGTTGGTGGACTCTGGTAGCACACACTCATTTATTGATAAGGAAGTAGGTCTGAAGTTATCAGGAATTCAGAAACTAAAACAACCTCTCATTGTTAGGATTGCTGATGGATGAGTTGCACACATGAAATTACTAACTGCAAATGGTGGATGCAGGGGCATCAGTTCTGCAACAATTTCAGAATGTTGCCCTTGGGAAACTATGATATCATCCTTGGAATGGATTGGCTTGAATCTATCAGCCCTATGCAAGTTGATTGGGCAAACAAGTGGATGGAATTCAATCATCAAGGTGCCAGCATCAGGGTACAAGGACTGCTGTCCACTCCTGTGCAATGTTCACCTGTTACATGCCATCAATTGAATGGAATGAGTAGAAGGGGATCACTCAGTTACATGGTTCAACTGCAGCCTGTAACTAGACAGGAAGATATTAACATTCCAGACCAGGTACAACACATTATTCAGGATTATAAGGAGATTTTTCAGGAACCTGAGGGATTACCACCAAGGAGAACATGTGACCATATAATTACCCTTGTCCCAGGAGCTAAACCAATCAACCTCAGACCCTATAGACACAACCCAGCTCTCAAGGATGAAATTGAGAAGCAGATTTCTGACATGCTCAGTTCTGGTGTCATACAGCATAGCCAAAGTCCCTTTGCTTCTCCTGCAATACTTGTCAAAAAGAAAAATGGCACATGGAGGTTAGTCATTGATTACAGGCAGCTCAATGCCATAACTGTGAAAACCAAATATCCTGTTCCTGTGATAGAGGAATTACTTGACGAACTCACTGGTGCTCAGTGGTTTACCAAACTAGATCTCTGGTCTGGGTACCACCAAATCAGGATGGCGGCCGGAGAAGAGTACAAAACTGCTTTTTAG
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| CDS seq | ATGGAAATTAGTGGTAGTGTTCCCCCAATGATATGCCCACAATTCAGTGGTGATAATCCTCAGATGTGGAAGGCCAACTGTGAACAGTACTTTGATGTATATGGAATTCATCCAGCAAATTGGGTTAAAATTGCCACCCTGAATTTCTCGGGAAATGCTGCATTTTGGTTACAATCAGTGAGGTCTCAGATGGCAGGAATTTCTTGGTATGGGTTGTGTGAAGCTGTTTGTGCTAGATTCGCTAAGGACAAGCATCAGGCCCTCATTAGACAATGGATTCACTTAAATCAGACTGGTACTGTAGCTGAGTATATGGAGAAGTTTGATGGTTTAATGCACCAACTGATGGCATATGACTCCTCCCTGATTCCAGTATACTTTGTTACCAAGTTCGTTGAAGGGCTCAGAGATGAAATTAGGGTGGTGGTAATGGTCCAAAGACCCCAGGATCTTGATACAGCTTGTGCTATTGCTCTGTTGCAGGAAGAGGCAATTGAAGGGATTAAATCACCAGCTCCTAAAAGATCAGACTCAGTACTTGGAATTAAGGGCAGTAGACCCATCAGTAATTACAGTAATCCGCTCAATACAAAGTCCAACAATACCAGTGCTGAAGACAGGAGAGGTACAGAGGCAGCTAGAGCCAGAGATGAAAAATTGGCTGCTCTGAGGTCCTATAGAAGAGCTAAGGGTCTGTGCTTTACATGTGGAGAAAGATGGGGCAAGGAACATAAATGTGCCAGTTCTATACAGTTACATGTGGTGGAGGAATTATTGGAAGCTCTAACTGTTAATTCAGAAGCTGACCCTGATTCCAGTCCTGAAGATAGTGAGATCCAACAGCAGGGAGTCTTACTGGCCATTTCACAGCAAGCAGTTTGGGGAACTGAGTCCACAAGATCTATCAAACTCAGGGGTTGGGTTCAGGATATGGAATTACTAATGTTGGTGGACTCTGGTAGCACACACTCATTTATTGATAAGGAAGGGCATCAGTTCTGCAACAATTTCAGAATGTTGCCCTTGGGAAACTATGATATCATCCTTGGAATGGATTGGCTTGAATCTATCAGCCCTATGCAAGTTGATTGGGCAAACAAGTGGATGGAATTCAATCATCAAGGTGCCAGCATCAGGGTACAAGGACTGCTGTCCACTCCTGTGCAATGTTCACCTGTTACATGCCATCAATTGAATGGAATGAGTAGAAGGGGATCACTCAGTTACATGGTTCAACTGCAGCCTGTAACTAGACAGGAAGATATTAACATTCCAGACCAGGTACAACACATTATTCAGGATTATAAGGAGATTTTTCAGGAACCTGAGGGATTACCACCAAGGAGAACATGTGACCATATAATTACCCTTGTCCCAGGAGCTAAACCAATCAACCTCAGACCCTATAGACACAACCCAGCTCTCAAGGATGAAATTGAGAAGCAGATTTCTGACATGCTCAGTTCTGGTGTCATACAGCATAGCCAAAGTCCCTTTGCTTCTCCTGCAATACTTGTCAAAAAGAAAAATGGCACATGGAGGTTAGTCATTGATTACAGGCAGCTCAATGCCATAACTGTGAAAACCAAATATCCTGTTCCTGTGATAGAGGAATTACTTGACGAACTCACTGGTGCTCAGTGGTTTACCAAACTAGATCTCTGGTCTGGGTACCACCAAATCAGGATGGCGGCCGGAGAAGAGTACAAAACTGCTTTTTAG
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| Protein seq | MEISGSVPPMICPQFSGDNPQMWKANCEQYFDVYGIHPANWVKIATLNFSGNAAFWLQSVRSQMAGISWYGLCEAVCARFAKDKHQALIRQWIHLNQTGTVAEYMEKFDGLMHQLMAYDSSLIPVYFVTKFVEGLRDEIRVVVMVQRPQDLDTACAIALLQEEAIEGIKSPAPKRSDSVLGIKGSRPISNYSNPLNTKSNNTSAEDRRGTEAARARDEKLAALRSYRRAKGLCFTCGERWGKEHKCASSIQLHVVEELLEALTVNSEADPDSSPEDSEIQQQGVLLAISQQAVWGTESTRSIKLRGWVQDMELLMLVDSGSTHSFIDKEGHQFCNNFRMLPLGNYDIILGMDWLESISPMQVDWANKWMEFNHQGASIRVQGLLSTPVQCSPVTCHQLNGMSRRGSLSYMVQLQPVTRQEDINIPDQVQHIIQDYKEIFQEPEGLPPRRTCDHIITLVPGAKPINLRPYRHNPALKDEIEKQISDMLSSGVIQHSQSPFASPAILVKKKNGTWRLVIDYRQLNAITVKTKYPVPVIEELLDELTGAQWFTKLDLWSGYHQIRMAAGEEYKTAF |
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| Function | Transposon Ty3-G Gag-Pol polyprotein [UniProtKB/Swiss-Prot:Q99315] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_12G0039700 | OsZS97_12T0039700.1 | Chr12 | 2158253 | 2160084 | + | makerRMon | ||
| CDS seq | ATGGAAATTAGTGGTAGTGTTCCCCCAATGATATGCCCACAATTCAGTGGTGATAATCCTCAGATGTGGAAGGCCAACTGTGAACAGTACTTTGATGTATATGGAATTCATCCAGCAAATTGGGTTAAAATTGCCACCCTGAATTTCTCGGGAAATGCTGCATTTTGGTTACAATCAGTGAGGTCTCAGATGGCAGGAATTTCTTGGTATGGGTTGTGTGAAGCTGTTTGTGCTAGATTCGCTAAGGACAAGCATCAGGCCCTCATTAGACAATGGATTCACTTAAATCAGACTGGTACTGTAGCTGAGTATATGGAGAAGTTTGATGGTTTAATGCACCAACTGATGGCATATGACTCCTCCCTGATTCCAGTATACTTTGTTACCAAGTTCGTTGAAGGGCTCAGAGATGAAATTAGGGTGGTGGTAATGGTCCAAAGACCCCAGGATCTTGATACAGCTTGTGCTATTGCTCTGTTGCAGGAAGAGGCAATTGAAGGGATTAAATCACCAGCTCCTAAAAGATCAGACTCAGTACTTGGAATTAAGGGCAGTAGACCCATCAGTAATTACAGTAATCCGCTCAATACAAAGTCCAACAATACCAGTGCTGAAGACAGGAGAGGTACAGAGGCAGCTAGAGCCAGAGATGAAAAATTGGCTGCTCTGAGGTCCTATAGAAGAGCTAAGGGTCTGTGCTTTACATGTGGAGAAAGATGGGGCAAGGAACATAAATGTGCCAGTTCTATACAGTTACATGTGGTGGAGGAATTATTGGAAGCTCTAACTGTTAATTCAGAAGCTGACCCTGATTCCAGTCCTGAAGATAGTGAGATCCAACAGCAGGGAGTCTTACTGGCCATTTCACAGCAAGCAGTTTGGGGAACTGAGTCCACAAGATCTATCAAACTCAGGGGTTGGGTTCAGGATATGGAATTACTAATGTTGGTGGACTCTGGTAGCACACACTCATTTATTGATAAGGAAGGGCATCAGTTCTGCAACAATTTCAGAATGTTGCCCTTGGGAAACTATGATATCATCCTTGGAATGGATTGGCTTGAATCTATCAGCCCTATGCAAGTTGATTGGGCAAACAAGTGGATGGAATTCAATCATCAAGGTGCCAGCATCAGGGTACAAGGACTGCTGTCCACTCCTGTGCAATGTTCACCTGTTACATGCCATCAATTGAATGGAATGAGTAGAAGGGGATCACTCAGTTACATGGTTCAACTGCAGCCTGTAACTAGACAGGAAGATATTAACATTCCAGACCAGGTACAACACATTATTCAGGATTATAAGGAGATTTTTCAGGAACCTGAGGGATTACCACCAAGGAGAACATGTGACCATATAATTACCCTTGTCCCAGGAGCTAAACCAATCAACCTCAGACCCTATAGACACAACCCAGCTCTCAAGGATGAAATTGAGAAGCAGATTTCTGACATGCTCAGTTCTGGTGTCATACAGCATAGCCAAAGTCCCTTTGCTTCTCCTGCAATACTTGTCAAAAAGAAAAATGGCACATGGAGGTTAGTCATTGATTACAGGCAGCTCAATGCCATAACTGTGAAAACCAAATATCCTGTTCCTGTGATAGAGGAATTACTTGACGAACTCACTGGTGCTCAGTGGTTTACCAAACTAGATCTCTGGTCTGGGTACCACCAAATCAGGATGGCGGCCGGAGAAGAGTACAAAACTGCTTTTTAG
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| Protein seq | MEISGSVPPMICPQFSGDNPQMWKANCEQYFDVYGIHPANWVKIATLNFSGNAAFWLQSVRSQMAGISWYGLCEAVCARFAKDKHQALIRQWIHLNQTGTVAEYMEKFDGLMHQLMAYDSSLIPVYFVTKFVEGLRDEIRVVVMVQRPQDLDTACAIALLQEEAIEGIKSPAPKRSDSVLGIKGSRPISNYSNPLNTKSNNTSAEDRRGTEAARARDEKLAALRSYRRAKGLCFTCGERWGKEHKCASSIQLHVVEELLEALTVNSEADPDSSPEDSEIQQQGVLLAISQQAVWGTESTRSIKLRGWVQDMELLMLVDSGSTHSFIDKEGHQFCNNFRMLPLGNYDIILGMDWLESISPMQVDWANKWMEFNHQGASIRVQGLLSTPVQCSPVTCHQLNGMSRRGSLSYMVQLQPVTRQEDINIPDQVQHIIQDYKEIFQEPEGLPPRRTCDHIITLVPGAKPINLRPYRHNPALKDEIEKQISDMLSSGVIQHSQSPFASPAILVKKKNGTWRLVIDYRQLNAITVKTKYPVPVIEELLDELTGAQWFTKLDLWSGYHQIRMAAGEEYKTAF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0 | 0.007581 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0142900 | RBH | 1.036543 | 0.471081 | 1.285871 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g04880 | RBH | 1.645183 | 0.743576 | 0.983226 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0142900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0037100 | RBH | 0 | 0.0209455 | 0.019105 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0006600 | SBH | 0.002383 | 0 | 0.000545 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
